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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9570#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1108 fasta sequence
[GCTATTCATTTTTATCGAAGTGGATAGAAAAGATTTAGGGTCCCAGTGATTCAAAATTAACTTATGTGTATCCCCAATAATAGGCCAATGTAAATTCCATAAAATAATAGAGCCATCAGAATAACCACAACATAATAAAGTATTGTCTAGTCTAGAAGTTTTAAGAGTATTACATGCAGGCGTAGAAAGACTACTGTTGTTGGTATATGAAGGAAATGGTAATATGAAATTCTCACATTCACCTGTAGGCGTACTAGACGCAGCTAAGAATAAGACAATAGATCCATTACTATATCCAGAAGCAACAACACGGTCATTTAAAATCCAGCTGACACACCTAGGCTGCATTTCGTTGGAAGATGAACTTTCAGGACTGATATTACTGACGCGTAACTGCGAACGAAACGAGATTTGTTTTTGGCATTTGTATAAATTTATTGGGCCAGCACTAGTTCCAACGGCTATATATCTTCCTGATCTTTGCGGAAAAGCTATGCAAGTTGCTGTGAAATTATGTGATAGCAAACTGAAAGTAGTTATATCTGATGTGTTTTGATCGTACACAAGATTTTTGCCAGCATACAGACGTCGAAAGAAAATAGCAGAACCAGAGTGGTCAATAACAGCTAGCTTACATGACCGGGGATCCCACTGAATCGATCGTAGCGAACACGTCAC-TGTCATTTGAGGCTTGT-AAGTCAAGGAAGGAGAATCAGGAATCTCCAAGTTACGGATGTCTGTATTTGACAATGACGGTCCAAACGCATTCTTATCATATAGTACAGACCAAAAAGAGACTGAAGAGTTTTGTACAGCAGCAAGATACATTCGTAGGTCAGTAAGAAGAGAATCCAGACTTTGTCAGGCAACAATTCAGTGGCATCGTTCAATGAAGAAGGCTGCTGAGCACTTGAAGGTCGAAGTGTCGTAAAAGGATTGGTGCGTCACCTCTGAAATTTGTAAGTTTTCCAGAAGCGGTCAAATCAAGACAATTTCAAGATTGATTTGACTTCAGCCATCCTTAGTCTTCAGTAATAAAGATAGAAGGTTGATGAACCTGTGTTAATCCTGACAGATCGCCTTCCAGTGAAGGTCCAGCAGTGAGACC]
[-] EMBL CD155867 [GCTATTCATTTTTATCGAAGTGGATAGAAAAGATTTAGGGTCCCAGTGATTCAAAATTAACTTATGTGTATCCCCAATAATAGGCCAATGTAAATTCCATAAAATAATAGAGCCATCAGAATAACCACAACATAATAAAGTATTGTCTAGTCTAGAAGTTTTAAGAGTATTACATGCAGGCGTAGAAAGACTACTGTTGTTGGTATATGAAGGAAATGGTAATATGAAATTCTCACATTCACCTGTAGGCGTACTAGACGCAGCTAAGAATAAGACAATAGATCCATTACTATATCCAGAAGCAACAACACGGTCATTTAAAATCCAGCTGACACACCTAGGCTGCATTTCGTTGGAAGATGAACTTTCAGGACTGATATTACTGACGCGTAACTGCGAACGAAACGAGATTTGTTTTTGGCATTTGTATAAATTTATTGGGCCAGCACTAGTTCCAACGGCTATATATCTTCCTGATCTTTGCGGAAAAGCTATGCA ]
[+] EMBL CD077020 [ ATAATAAAGTATTGTCTAGTCTAGAAGTTTTAAGAGTATTACATGCAGGCGTAGAAAGACTACTGTTGTTGGTATATGAAGGAAATGGTAATATGAAATTCTCACATTCACCTGTAGGCGTACTAGACGCAGCTAAGAATAAGACAATAGATCCATTACTATATCCAGAAGCAACAACACGGTCATTTAAAATCCAGCTGACACACCTAGGCTGCATTTCGTTGGAAGATGAACTTTCAGGACTGATATTACTGACGCGTAACTGCGAACGAAACGAGATTTGTTTTTGGCATTTGTATAAATTTATTGGGCCAGCACTAGTTCCAACGGCTATATATCTTCCTGATCTTTGCGGAAAAGCTATGCAAGTTGCTGTGAAATTATGTGATAGCAAACTGAAAGTAGTTATATCTGATGTGTTTTGATCGTACACAAGATTTTTGCCAGCATACAGACGTCGAAAGAAAATAGCAGAACCAGAGTGGTCAATAACAGCTAGCTTACATGACCGGGGATCCCACTGAATCGATCGTAGCGAACACGTCAC TGTCATTTGAGGCTTGT AAGTCAAGGAAGGAGAATCAGGAATCTCCAAGTTACGGATGTC ]
[-] EMBL CD078489 [ ACAGACGTCGAAAGAAAATAGCAGAACCAGAGTGGTCAATAACAGCTAGCTTACATGACCGGGGATCCCACTGAATCGATCGTAGCGAACACGTCAC TGTCATTTGAGGCTTGT AAGTCAAGGAAGGAGAATCAGGAATCTCCAAGTTACGGATGTCTGTATTTGACAATGACGGTCCAAACGCATTCTTATCATATAGTACAGACCAAAAAGAGACTGAAGAGTTTTGTACAGCAGCAAGATACATTCGTAGGTCAGTAAGAAGAGAATCCAGACTTTGTCAGGCAACAATTCAGTGGCATCGTTCAATGAAGAAGGCTGCTGAGCACTTGAAGGTCGAAGTGTCGTAAAAGGATTGGTGCGTCACCTCTGAAATTTGTAAGTTTTCCAGAAGCGGTCAAATCAAGACAATTTCAAGATTGATTTGACTTCAGCCATCCTTAGTCTTCAGTAATAAAGATAGAAGGTTGATGAACCTGTGTTAATCCTGACAGATCGCCTTCCAGTGAAGGTCCAGCAGTGAGACC]
[-] EMBL BE505124 [ CACNTGNCATTTGAGNTTTGTNAANTNAAGGANGGAGAATCAGGAATCTCAAAGTTACGGATGTCTGTATTTGACAATGACGGTCCAAACGCATTCTTATCATATAGTACAGACCAAAAAGAGACTGAAGAGTTTTGTACAGCAGCAAGATACATTCGTAGGTCAGTAAGAAG ]
consensusID : consensus_9570#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 414 fasta sequence
[GGGGAACTAAACCTAACTTCGTCACTATTCTGTAGGCGTACTAGACGCAGCTAAGAATAAGACAATAGATCCATTACTATATCCAGAAGCAACAACACGGTCATTTAAAATCCAGCTGACACACCTAGGCTGCATTTCGTTGGAAGATGAACTTTCAGGACTGATATTACTGACGCGTAACTGCGAACGAAACGAGATTTGTTTTTGGCATTTGTATAAA-TTTA-TTGGGCCAGCACTAGTTCCAACGGCTATATATCTT-CCTGATCTTTGCGGAAAAGCTATGCAAGTTGCTGTGAAATTATGTGATAGCAAACTGAAAGTAGTTATATCTGATGTGTTTTGATCGTACACAAGATTTTTGCCAGCATACAGACGTCGAAAGAAAATAGCAGAACCAGAGTGGTCAATAACAGC]
[-] EMBL CD171042 [GGGGAACTAAACCTAACTTCGTCACTATTCTGTAGGCGTACTAGACGCAGCTAAGAATAAGACAATAGATCCATTACTATATCCAGAAGCAACAACACGGTCATTTAAAATCCAGCTGACACACCTAGGCTGCATTTCGTTGGAAGATGAACTTTCAGGACTGATATTACTGACGCGTAACTGCGAACGAAACGAGATTTGTTTTTGGCATTTGTATAAA TTTA TTGGGCCAGCACTAGTTCCAACGGCTATATATCTT CCTGATCTTTGCGGAAAAGCTATGCAAGTTGCTGTGAAATTATGTGATAGCAAACTGAAAGTAGTTATATCTGATGTGTTTTGATCGTACACAAGATTTTTGCCAGCATACAGACGTCGAAAGAAAATAGCAGAACCAGAGTGGTCAATAACAGC]
[+] EMBL CD064345 [ taTANANTCCAGCTGACACACCTAGGCTGC TTCGTTGGAAGATGAACTTTCAGGACTGATATTACTGACGCGTAACTGCGAACGAAACGAGATTTGTTTTTGGCATTTGTATAAACTTTACTTGGGCCAGCACTAGTTCCAACGGCTATATATCTTCCCTGATCTTTGCGGAAAA ]
consensusID : consensus_9570#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 182 fasta sequence
[TGGTTCTAACCGTGGCAACGGAGAAAAACGATGCTCTACAGAGATTCCTGAGGTCATGTAACTTGAATGGATTTAAAGTGAAGGTAGGTAATTTTAAGAGGCGACATGCTTGTACTCAAAGGTGCTTGGAGAAGGCAGTCATTGGAAAGGTGGGCATGTTGCGAAGTCAACTGGTGGTGGAC]
[+] EMBL CD092302 [TGGTTCTAACCGTGGCAACGGAGAAAAACGATGCTCTACAGAGATTCCTGAGGTCATGTAACTTGAATGGATTTAAAGTGAAGGTAGGTAATTTTAAGAGGCGACATGCTTGTACTCAAAGGTGCTTGGAGAAGGCAGTCATTGGAAAGGTGGGCATGTTGCGAAGTCAACTGGTGGTGGAC]
consensusID : consensus_9570#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 177 fasta sequence
[CATGCCTGCAGGACTATAGATGATCCCCTATTTTTATTGTGTTGTTATTTCAGGAGGCGATGTACACGGACCGGAGATCGTGGGAATTGAAGTGTAAATGTGTTAGTGGGTATTGAGCGTGTTGGTTGACTGATTGAATTGTGTTAGTGGTTGTCGTTGTCATCCATCGGTTGTGTA]
[+] EMBL CD166948 [CATGCCTGCAGGACTATAGATGATCCCCTATTTTTATTGTGTTGTTATTTCAGGAGGCGATGTACACGGACCGGAGATCGTGGGAATTGAAGTGTAAATGTGTTAGTGGGTATTGAGCGTGTTGGTTGACTGATTGAATTGTGTTAGTGGTTGTCGTTGTCATCCATCGGTTGTGTA]
consensusID : consensus_9570#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 87 fasta sequence
[ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGTGAATTCTGCTTCACAATATAGGAAGACCC]
[+] EMBL BG932911 [ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGTGAATTCTGCTTCACAATATAGGAAGACCC]
[+] EMBL BG930226 [ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGTGAATTCTGCTTCACAATATAGGAAGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9570#0 GCTATTCATTTTTATCGAAGTGGATAGAAAAGATTTAGGGTCCCAGTGATTCAAAATTAA 60
consensus_9570#1 ------------------------------------------------------------
consensus_9570#2 ------------------------------------------------------------
consensus_9570#4 ------------------------------------------------------------
consensus_9570#3 ------------------------------------------------------------
consensus_9570#0 CTTATGTGTATCCCCAATAATAGGCCAATGTAAATTCCATAAAATAATAGAGCCATCAGA 120
consensus_9570#1 ------------------------------------------------------------
consensus_9570#2 ------------------------------------------------------------
consensus_9570#4 ------------------------------------------------------------
consensus_9570#3 ------------------------------------------------------------
consensus_9570#0 ATAACCACAACATAATAAAGTATTGTCTAGTCTAGAAGTTTTAAGAGTATTACATGCAGG 180
consensus_9570#1 ------------------------------------------------------------
consensus_9570#2 ------------------------------------------------------------
consensus_9570#4 ------------------------------------------------------------
consensus_9570#3 ------------------------------------------------------------
consensus_9570#0 CGTAGAAAGACTACTGTTGTTGGTATATGAAGGAAATGGTAATATGAAATTCTCACATTC 240
consensus_9570#1 ------------------------------GGGGAAC--TAA-ACCTAACTTCGTCACTA 27
consensus_9570#2 ------------------------------------------------------------
consensus_9570#4 ------------------------------------------------------------
consensus_9570#3 ------------------------------------------------------------
consensus_9570#0 ACCTGTAGGCGTACTAGACGCAGCTAAGAATAAGACAATAGATCCATTACTATATCCAGA 300
consensus_9570#1 TTCTGTAGGCGTACTAGACGCAGCTAAGAATAAGACAATAGATCCATTACTATATCCAGA 87
consensus_9570#2 ------------------------------------------------------------
consensus_9570#4 ------------------------------------------------------------
consensus_9570#3 ------------------------------------------------------------
consensus_9570#0 AGCAACAACACGGTCATTTAAAATCCAGCTGACACACCTAGGCTGCATTTCGTTGGAAGA 360
consensus_9570#1 AGCAACAACACGGTCATTTAAAATCCAGCTGACACACCTAGGCTGCATTTCGTTGGAAGA 147
consensus_9570#2 ------------------------------------------------------------
consensus_9570#4 ------------------------------------------------------------
consensus_9570#3 ------------------------------------------------------------
consensus_9570#0 TGAACTTTCAGGACTGATATTACTGACGCGTAACTGCGAACGAAACGAGATTTGTTTTTG 420
consensus_9570#1 TGAACTTTCAGGACTGATATTACTGACGCGTAACTGCGAACGAAACGAGATTTGTTTTTG 207
consensus_9570#2 ------------------------------------------------------------
consensus_9570#4 ------------------------------------------------------------
consensus_9570#3 ---------------------------------------------------------CAT 3
consensus_9570#0 GCATTTGTATAAATTTATTGGGCCAGCACTAGTTCCAACGGCTATATATCTTCCTGATCT 480
consensus_9570#1 GCATTTGTATAAATTTATTGGGCCAGCACTAGTTCCAACGGCTATATATCTTCCTGATCT 267
consensus_9570#2 -----------------------------TGGTTCTAACCGTGGCA-ACGGAGAAAAACG 30
consensus_9570#4 ----------------------------------------ATGATAGGAAGAGCCGACAT 20
consensus_9570#3 GCCTGCAGGACTATAGATGATCCCCTATTTTTATTGTGTTGTTATTTCAGGAGGCGATGT 63
*
consensus_9570#0 TTGCGGAAAAGCTATGCAAG---TTGCTGTGAAA-TTATGTGATAGCAAACTGA--AAGT 534
consensus_9570#1 TTGCGGAAAAGCTATGCAAG---TTGCTGTGAAA-TTATGTGATAGCAAACTGA--AAGT 321
consensus_9570#2 ATGCTCTACAGAGATTCCTG---AGGTCATGTAACTTGAATGGATTTAAAGTGA--AGGT 85
consensus_9570#4 CGAAGGATCAAAAAGCGACG---TCGCTATGAACGCTTGGTGAATTCTGCTTCACAATAT 77
consensus_9570#3 ACACGGACCGGAGATCGTGGGAATTGAAGTGTAA-ATGTGTTAGTGGGTATTGAGCGTGT 122
* * * ** * * * * * *
consensus_9570#0 AGTTATATCT--GATGTGTTTTGATCGTACACAAGATTTTTGCCAGCATACAGACGTCGA 592
consensus_9570#1 AGTTATATCT--GATGTGTTTTGATCGTACACAAGATTTTTGCCAGCATACAGACGTCGA 379
consensus_9570#2 AGGTAATTTTAAGAGGCGACATGCTTGTACTCAAAGGTGCTTGGAGAAGGCAGTCATTGG 145
consensus_9570#4 AGGAAGACCC-------------------------------------------------- 87
consensus_9570#3 TGGTTGACT--------GATTGAATTGTGTTAGTGGTTGTCGTTGTCATCCATCGGTTGT 174
*
consensus_9570#0 AAGAAAATAGCAGAACCAGAGT-GGTCAATAACAGCTAGCTTACATGACCGGGGATCCCA 651
consensus_9570#1 AAGAAAATAGCAGAACCAGAGT-GGTCAATAACAGC------------------------ 414
consensus_9570#2 AAAGGTGGGCATGTTGCGAAGTCAACTGGTGGTGGAC----------------------- 182
consensus_9570#4 ------------------------------------------------------------
consensus_9570#3 GTA--------------------------------------------------------- 177
consensus_9570#0 CTGAATCGATCGTAGCGAACACGTCACTGTCATTTGAGGCTTGTAAGTCAAGGAAGGAGA 711
consensus_9570#1 ------------------------------------------------------------
consensus_9570#2 ------------------------------------------------------------
consensus_9570#4 ------------------------------------------------------------
consensus_9570#3 ------------------------------------------------------------
consensus_9570#0 ATCAGGAATCTCCAAGTTACGGATGTCTGTATTTGACAATGACGGTCCAAACGCATTCTT 771
consensus_9570#1 ------------------------------------------------------------
consensus_9570#2 ------------------------------------------------------------
consensus_9570#4 ------------------------------------------------------------
consensus_9570#3 ------------------------------------------------------------
consensus_9570#0 ATCATATAGTACAGACCAAAAAGAGACTGAAGAGTTTTGTACAGCAGCAAGATACATTCG 831
consensus_9570#1 ------------------------------------------------------------
consensus_9570#2 ------------------------------------------------------------
consensus_9570#4 ------------------------------------------------------------
consensus_9570#3 ------------------------------------------------------------
consensus_9570#0 TAGGTCAGTAAGAAGAGAATCCAGACTTTGTCAGGCAACAATTCAGTGGCATCGTTCAAT 891
consensus_9570#1 ------------------------------------------------------------
consensus_9570#2 ------------------------------------------------------------
consensus_9570#4 ------------------------------------------------------------
consensus_9570#3 ------------------------------------------------------------
consensus_9570#0 GAAGAAGGCTGCTGAGCACTTGAAGGTCGAAGTGTCGTAAAAGGATTGGTGCGTCACCTC 951
consensus_9570#1 ------------------------------------------------------------
consensus_9570#2 ------------------------------------------------------------
consensus_9570#4 ------------------------------------------------------------
consensus_9570#3 ------------------------------------------------------------
consensus_9570#0 TGAAATTTGTAAGTTTTCCAGAAGCGGTCAAATCAAGACAATTTCAAGATTGATTTGACT 1011
consensus_9570#1 ------------------------------------------------------------
consensus_9570#2 ------------------------------------------------------------
consensus_9570#4 ------------------------------------------------------------
consensus_9570#3 ------------------------------------------------------------
consensus_9570#0 TCAGCCATCCTTAGTCTTCAGTAATAAAGATAGAAGGTTGATGAACCTGTGTTAATCCTG 1071
consensus_9570#1 ------------------------------------------------------------
consensus_9570#2 ------------------------------------------------------------
consensus_9570#4 ------------------------------------------------------------
consensus_9570#3 ------------------------------------------------------------
consensus_9570#0 ACAGATCGCCTTCCAGTGAAGGTCCAGCAGTGAGACC 1108
consensus_9570#1 -------------------------------------
consensus_9570#2 -------------------------------------
consensus_9570#4 -------------------------------------
consensus_9570#3 -------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||