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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9571#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1099 fasta sequence
[TGCTACGTCTATTGAAAGCTAGTGAAGGTCTAATTGCTATAATTTCAACGGGCAACAGAGTTTATACGACAAGCATTAAAACTGGAAATAACTAATAACCAAGGTAAAAATTGTTCACAAAGCAACTAAGACGTAATCTGTCGAAGTGCTTACATATGGTCGTATACGCAATGATCCATATCAGTAAAATCTTAGTGACTGATTTCATGTAGTAAAGATAAGCACTACTGTTTATGTGAAAAACTGCGGCAAAATTTCCAGAGACTTTTGAGCTATATCTGATGTTGTTTTAACCCACTTGGTTGCAAGAACCCAAAAATAGTGTAACGACGACTTCGGTAGTCTCTTGGCATTTGATGAAAATACTTTGACGTGTATATGATGCTTACTTCATAGATTGCTTTTCATAGTAAGGAATATATTAACTAGAAAATGTATGGAAAACATACCTGTAAAGGTGGCATTTATGTTTCCA-GGTTCTGTTTCAGAATTGAGCTCGTCACATGCATCACTAATCGTTGAGTTTGTGTTTTGAGAGAAAGAAAAACCTTTAGCTGCGTTTTTCAAATGTGGAATGTCGGACCCAGATCGGTCTGCTTGTGAACACGATACTCGTTGTGATAGCGTTAGAGGAAGAATTGAAGTCCCAGTTGAGCTCGTAGGCAGATCTTTTAGTGCATCATTATCTTTTCTTGCTAACCTGATAAGCCGTGATATTAAACTTTGACTGGACGACTCATCAACTCCAGTGATAACAGATTCTTGGGAAGTTAGAATTATTGTGTTTAAGTCGTTATCGGCCCACTCAGCGAACAACTGACGAGAAAATCCACAACTAAGATCGGAAAGTGATGAAAGAACAACTTTAGGCTCTGAAACAGCATCTAACTGTTCTAACGTGTGACACAACTGCATATGCCGGAAATGAAACGGATTACTCCGTTGAT-CCTCAAAAGATCGCATTACTTTTTCGGACATCCACTCAACCATTGACTTTGCAAAATCCACAACATTTAAAGCTACATAATTTAGCATCGCCAATCCATAAGCCATTAGGCCAGATTCTTGGTTTAGCCAACATTGTTCTTAAAAATGGGCT]
[+] EMBL CD200658 [TGCTACGTCTATTGAAAGCTAGTGAAGGTCTAATTGCTATAATTTCAACGGGCAACAGAGTTTATACGACAAGCATTAAAACTGGAAATAACTAATAACCAAGGTAAAAATTGTTCACAAAGCAACTAAGACGTAATCTGTCGAAGTGCTTACATATGGTCGTATACGCAATGATCCATATCAGTAAAATCTTAGTGACTGATTTCATGTAGTAAAGATAAGCACTACTGTTTATGTGAAAAACTGCGGCAAAATTTCCAGAGACTTTTGAGCTATATCTGATGTTGTTTTAACCCACTTGGTTGCAAGAACCCAAAAATAGTGTAACGACGACTTCGGTAGTCTCTTGGCATTTGATGAAAATACTTTGACGTGTATATGATGCTTACTTCATAGATTGCTTTTCATAGTAAGGAATATATTAACTAGAAAATGTATGGAAAACATACCTGTAAAGGTGGCATTTATGTTTCCA GGTTCTGTTTCAGAATTGAGCTCGTCACATGCATCACTAATCGTTGAGTTTGTGTTTTGAGAGAAAGAAAAACCTTTAGCTGCGTTTTTCAAATGTGGAATGTCGGACCCAGATCGGT ]
[-] EMBL CD125603 [ gTTCCAGGGTTCTGTTCNAGAATTGAGCTCGTCACATGCATCACTAATCGTTGAGTTTGTGTTNTGAGAGAAAGAAAAACCTTTAGCTGCGTTTTTCAAATGTGGAATGTCGGACCCAGATCGGTCTGCTTGTGAACACGATACTCGTTGTGATAGCGTTAGAGGAAGAATTGAAGTCCCAGTTGAGCTCGTAGGCAGATCTTTTAGTGCATCATTATCTTTTCTTGCTAACCTGATAAGCCGTGATATTAAACTTTGACTGGACGACTCATCAACTCCAGTGATAACAGATTCTTGGGAAGTTAGAATTATTGTGTTTAAGTC ]
[+] EMBL CD198592 [ GATCGGTCTGCTTGTGAACACGATACTCGTTGTGATAGCGTTAGAGGAAGAATTGAAGTCCCAGTTGAGCTCGTAGGCAGATCTTTTAGTGCATCATTATCTTTTCTTGCTAACCTGATAAGCCGTGATATTAAACTTTGACTGGACGACTCATCAACTCCAGTGATAACAGATTCTTGGGAAGTTAGAATTATTGTGTTTAAGTCGTTATCGGCCCACTCAGCGAACAACTGACGAGAAAATCCACAACTAAGATCGGAAAGTGATGAAAGAACAACTTTAGGCTCTGAAACAGCATCTAACTGTTCTAACGTGTGACACAACTGCATATGCCGGAAATGAAACGGATTACTCCGTTGAT CCTCAAAAGATCGCATTACTTTTTCGGACATCCACTCAACCATTGACTTTGCAAAATCCACAACA ]
[+] EMBL CD142404 [ GATCGGTCTGCTTGTGAACACGATACTCGTTGTGATAGCGTTAGAGGAAGAATTGAAGTCCCAGTTGAGCTCGTAGGCAGATCTTTTAGTGCATCATTATCTTTTCTTGCTAACCTGATAAGCCGTGATATTAAACTTTGACTGGACGACTCATCAACTCCAGTGATAACAGATTCTTGGGAAGTTAGAATTATTGTGTTTAAGTCGTTATCGGCCCACTCAGCGAACAACTGACGGGAAAATCCACAACTAAGATCGGAGAGTGATGAAAGAAC ACTTTAGGCTCTGAAACAGCATCTAACTGTTCTAACGTGTGACACAACTGCATATGCCGNGAATGAAACGGATTACTCCGTTGATCCCTCA ]
[+] EMBL CD125595 [ ATTATTGTGTTTAAGTCGTTATTGGCCCACTCAGCGAACAACTGACGAGAAAATCCACAACTAAGATCGGAAAGTGATGAAAGAACAACTTTAGGCTCTGAAACAGCATCTAACTGTTCTAACGTGTGACACAGCTGCATATGCCGGAAATGAAACGGATTACTCCGTTGAT CCTCAAAAGATCGCATTACTTTTTCGGACATCCACTCAACCATTGACTTTGCAAAATCCACAACATTTAAAGCTACATAATTTAGCATCGCCAATCCATAAGCCATTAGGCCAGATTCTTGGTTTAGCCAACATTGTTCTTAAAAATGGGCT]
consensusID : consensus_9571#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 728 fasta sequence
[AGCCCTGGATATATGTCATATCCAGCTTGATGCCTCCAGAAAGTTAAGTGAANGGTTGTGACTNCAAATTGTTCCATATTANNAGGTATACAAGTCTTAGGAAATAACCTAGTCGTATGCTGGAACAAATGTTTTCTTCGAATGATCTCTTGGTACGGACAACGTAAGAGAGAGTGATTTTGATTTTTCTATGTGAGTACCTTCCTCTGAACCATATGGGCGATTCGAACCACATGTTGATTCATTTTCCAATTCAGAATTACAAGATGGTTGCTTCTCAAGGATTCCTTCGGCAACTTGTGGTGAAACATCACTATGAGTAATATCACTTGCCGATGGCATCGGGATGTCTGTAAAGGTGGCATTTATGTTTCCAGGTTCTGTTTCAGAATTGAGCTCGTCACATGCATCACTAATCGTTGAGTTTGTGTTTTGAGAGAAAGAAAAACCTTTAGCTGCGTTTTTCAAATGTGGAATGTCGGACCCAGATCGGTCTGCTTGTGAACACGATACTCGTTGTGATAGCGTTAGAGGAAGAATTGAAGTCCCAGTTGAGCTCGTAGGCAGATCTTTTAGTGCATCATTATCTTTTCTTGCTAACCTGATAAGCCGTGATATTAAACTTTGACTGGACGACTCATCAACTCCAGTGATACCAGATTCTTGGGAAGTTAGAATTATTGTGTTTAAGTCGTTATCGGCCCACTCAGCGAACAACTGACGAGAAA]
[-] EMBL CD199056 [AGCCCTGGATATATGTCATATCCAGCTTGATGCCTCCAGAAAGTTAAGTGAANGGTTGTGACTNCAAATTGTTCCATATTANNAGGTATACAAGTCTTAGGAAATAACCTAGTCGTATGCTGGAACAAATGTTTTCTTCGAATGATCTCTTGGTACGGACAACGTAAGAGAGAGTGATTTTGATTTTTCTATGTGAGTACCTTCCTCTGAACCATATGGGCGATTCGAACCACATGTTGATTCATTTTCCAATTCAGAATTACAAGATGGTTGCTTCTCAAGGATTCCTTCGGCAACTTGTGGTGAAACATCACTATGAGTAATATCACTTGCCGATGGCATCGGGATGTCTGTAAAGGTGGCATTTATGTTTCCAGGTTCTGTTT ]
[-] EMBL CD199030 [ gctTGGAACAATTGTTTCTTTCGAATGATCTCTTGGTACGGACAACGTAAGAGAGAGTGATTTTGATTTTTCTATGTGAGTACCTTCCTCTGAACCATATGGGCGATTCGAACCACATGTTGATTCATTTTCCAATTCAGAATTACAAGACGGTTGCTTCTCAAGGATTCCTTCGGCAACTTGTGGTGAAACATCACTATGAGTAATATCACTTGCCGATGGCATCGGGATGTCTGTAAAGGTGGCATTTATGTTTCCAGGTTCTGTTT ]
[-] EMBL AI976401 [ TGATCTCTTGGTACGGACAACGTAAGAGAGAGTGATTTTGATTTTTCTATGTGAGTACCTTCCTCTGAACCATATGGGCGATTCGAACCACATGTTGATTCATTTTCCAATTCAGAATTACAAGATGGTTGCTTCTCAAGGATTCCTTCGGCAACTTGTGGTGAAACATCACTATGAGTAATATCACTTGCCGATGGCATCGGGATGTCTGTAAAGGTGGCATTTATGTTTCCAGGTTCTGTTTCAGAATTGAGCTCGTCACATGCATCACTAATCGTTGAGTTTGTGTTTTGAGAGAAAGAAAAACCTTTAGCTGCGTTTTTCAAATGTGGAATGTCGGACCCAGATCGGTCTGCTTGTGAACACGATACTCGTTGTGATAGCGTTAGAGGAAGAATTGAAGTCCCAGTTGAGCTCGTAGGCAGATCTTTTAGTGCATCATTATCTTTTCTTGCTAACCTGATAAGCCGTGATATTAAACTTTGACTGGACGACTCATCAACTCCAGTGATACCAGATTCTTGGGAAGTTAGAATTATTGTGTTTAAGTCGTTATCGGCCCACTCAGCGAACAACTGACGAGAAA]
[-] EMBL AI976403 [ TTGCCAATGGCATCGGGATGTCTGTAATGGTGGCATTTATGTTTCCAGGTTCTGTTTCAAAATTGAGCTCGTCACATGCATCACTAATCGTTGAGTTTGTGTTTTGAGAGAAAGAAAAACCTTTATCTGCGTTTTTCAAATGTGGAATGTCGGACCCAGATCGGTCTGATTGTGAACACGATACTCGTTGTGATAGCGTTAGAGTAAGAATTGAAGTCCCAGTTGAGCTCGTAGGCAGATCTTTTAGTGCATCATTATCTT ]
consensusID : consensus_9571#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 246 fasta sequence
[GAAAACAATTGTTCCAAGCAATACGACTAGGTTATTTCCTAAGACTTGTATACCTTTAAATATGGAACAATTTGGAGTCACAAACCTTCACTTAACTTCTGGAAGGCATCAAGCTGGATATGACATATATCCAGGGCTTCATAACCAAGCTGGTGGGCAGTTTTTCCGTGTGGCTAAACGGACTCAATTGCTGTTCCCTCAAAATGAAAAGAAGATTCACTGGGACGAATATGGAGCACATCTTGA]
[+] EMBL CD179749 [GAAAACAATTGTTCCAAGCAATACGACTAGGTTATTTCCTAAGACTTGTATACCTTTAAATATGGAACAATTTGGAGTCACAAACCTTCACTTAACTTCTGGAAGGCATCAAGCTGGATATGACATATATCCAGGGCTTCATAACCAAGCTGGTGGGCAGTTTTTCCGTGTGGCTAAACGGACTCAATTGCTGTTCCCTCAAAATGAAAAGAAGATTCACTGGGACGAATATGGAGCACATCTTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9571#0 TGCTACGTCTATTGAAAGCTAGTGAAGGTCTAATTGCTATAATTTCAACGGGCAACAGAG 60
consensus_9571#1 ------------------------------------------------------------
consensus_9571#2 ------------------------------------------------------------
consensus_9571#0 TTTATACGACAAGCATTAAAACTGGAAATAACTAATAACCAAGGTAAAAATTGTTCACAA 120
consensus_9571#1 -----------------AGCCCTGGATATATGTCATATCCAGCTTGATGCCT--CCAGAA 41
consensus_9571#2 ------------------------------------------------------------
consensus_9571#0 AGC-AACTAAGACGTAATCTGTCGAAGTGCTTACATATGGTCGTATACGCAATGATCCAT 179
consensus_9571#1 AGTTAAGTGAANGGTTGTGACTNCAAATTGTTCCATATTANNAGGTATACAA--GTCTTA 99
consensus_9571#2 ------------------------------------------------------------
consensus_9571#0 ATCAGTAAAATCTTAGTGACTGATTTCATGTAGTAAAGATAAGCACTACTGTTTATGTGA 239
consensus_9571#1 GGAAATAACCTAGTCGTATGCTGGAACAAATGTTTTCTTCGAATGAT-CTCTTGGTACGG 158
consensus_9571#2 ------------------------------------------------------------
consensus_9571#0 AAAACTGCGGCAAAATTTCCAGAGACTTTTGAGCTATATCTG-ATGTTGTTTTAACCCAC 298
consensus_9571#1 ACAACGTAAGAGAGAGTGATTTTGATTTTT---CTATGTGAGTACCTTCCTCTGAACCAT 215
consensus_9571#2 ------------------------------------------------------------
consensus_9571#0 TTGGTTGCAAGAACCCAAAAATAGTGTAACGACGACTTCGGTAGTCTCTTGGCATTTGAT 358
consensus_9571#1 ATGGGCG-----ATTCGAACCACATGT--TGATTCATTTTCCAAT---TCAGAATTACAA 265
consensus_9571#2 ------------------------------------------------------------
consensus_9571#0 GAAAATACTTTGACGTGTATATGATGCTTACTTCATAGATTGCTTTTCATAGTAAGGAAT 418
consensus_9571#1 GATGGTTGCTTCTCAAGGATTCCTTCGGCAACTTGT-GGTGAAACATCACTATGAGTAAT 324
consensus_9571#2 ------------------------------------------------------------
consensus_9571#0 ATATTAACTAGAAAATGTATGGAAAACATACCTGTAAAGGTGGCATTTATGTTTCCAGGT 478
consensus_9571#1 A--TCACTTGCCGATGGCATCGGG---ATGTCTGTAAAGGTGGCATTTATGTTTCCAGGT 379
consensus_9571#2 ------------------------------------------------------------
consensus_9571#0 TCTGTTTCAGAATTGAGCTCGTCACATGCATCACTAATCGTTGAGTTTGTGTTTTGAGAG 538
consensus_9571#1 TCTGTTTCAGAATTGAGCTCGTCACATGCATCACTAATCGTTGAGTTTGTGTTTTGAGAG 439
consensus_9571#2 --------GAAAACAA--TTGTTCCAAGCAATACGACTAGGT-------TATTTCCTAAG 43
** * * ** ** *** ** * * * * * *** **
consensus_9571#0 AAAGAAAAACCTTTAGCTGCGTTTTTCAAATGTGGAATGTCGGACCCAGATCGGTCTGCT 598
consensus_9571#1 AAAGAAAAACCTTTAGCTGCGTTTTTCAAATGTGGAATGTCGGACCCAGATCGGTCTGCT 499
consensus_9571#2 ACTTGTATACCTTTAAATATGGAAC---AATTTGGAGTCACAAACCTTCACTTAACTTCT 100
* * ******* * * *** **** * * *** * ** **
consensus_9571#0 TGTGAACACGATACTCGTTGTGATAGCGTTAGAGGAAGAATTGAAGTCCCAGTTGAGCTC 658
consensus_9571#1 TGTGAACACGATACTCGTTGTGATAGCGTTAGAGGAAGAATTGAAGTCCCAGTTGAGCTC 559
consensus_9571#2 GGAAGGCATCAAGCTGGATATGACA----TATATCCAGGGCT----TCATAACCAAGCTG 152
* ** * ** * * *** * ** * ** * ** * ****
consensus_9571#0 GTAGGCAGATCTTTTA-GTGCATCATTATCTTTTCTTGCTAACCTGATAAGCCGTGATAT 717
consensus_9571#1 GTAGGCAGATCTTTTA-GTGCATCATTATCTTTTCTTGCTAACCTGATAAGCCGTGATAT 618
consensus_9571#2 GTGGGCAGTTTTTCCGTGTGGCTAAACGGACTCAATTGCTGTTCCCTCAAA--ATGAAAA 210
** ***** * ** *** * * * ***** * ** *** *
consensus_9571#0 TAAACTTTGACTGGACGACTCATCAACTCCAGTGATAACAGATTCTTGGGAAGTTAGAAT 777
consensus_9571#1 TAAACTTTGACTGGACGACTCATCAACTCCAGTGATACCAGATTCTTGGGAAGTTAGAAT 678
consensus_9571#2 GAAGATTCACTGGGACGAAT-ATGGAGCACATCTTGA----------------------- 246
** ** ****** * ** * ** *
consensus_9571#0 TATTGTGTTTAAGTCGTTATCGGCCCACTCAGCGAACAACTGACGAGAAAATCCACAACT 837
consensus_9571#1 TATTGTGTTTAAGTCGTTATCGGCCCACTCAGCGAACAACTGACGAGAAA---------- 728
consensus_9571#2 ------------------------------------------------------------
consensus_9571#0 AAGATCGGAAAGTGATGAAAGAACAACTTTAGGCTCTGAAACAGCATCTAACTGTTCTAA 897
consensus_9571#1 ------------------------------------------------------------
consensus_9571#2 ------------------------------------------------------------
consensus_9571#0 CGTGTGACACAACTGCATATGCCGGAAATGAAACGGATTACTCCGTTGATCCTCAAAAGA 957
consensus_9571#1 ------------------------------------------------------------
consensus_9571#2 ------------------------------------------------------------
consensus_9571#0 TCGCATTACTTTTTCGGACATCCACTCAACCATTGACTTTGCAAAATCCACAACATTTAA 1017
consensus_9571#1 ------------------------------------------------------------
consensus_9571#2 ------------------------------------------------------------
consensus_9571#0 AGCTACATAATTTAGCATCGCCAATCCATAAGCCATTAGGCCAGATTCTTGGTTTAGCCA 1077
consensus_9571#1 ------------------------------------------------------------
consensus_9571#2 ------------------------------------------------------------
consensus_9571#0 ACATTGTTCTTAAAAATGGGCT 1099
consensus_9571#1 ----------------------
consensus_9571#2 ----------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||