These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9571#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1099 fasta sequence [TGCTACGTCTATTGAAAGCTAGTGAAGGTCTAATTGCTATAATTTCAACGGGCAACAGAGTTTATACGACAAGCATTAAAACTGGAAATAACTAATAACCAAGGTAAAAATTGTTCACAAAGCAACTAAGACGTAATCTGTCGAAGTGCTTACATATGGTCGTATACGCAATGATCCATATCAGTAAAATCTTAGTGACTGATTTCATGTAGTAAAGATAAGCACTACTGTTTATGTGAAAAACTGCGGCAAAATTTCCAGAGACTTTTGAGCTATATCTGATGTTGTTTTAACCCACTTGGTTGCAAGAACCCAAAAATAGTGTAACGACGACTTCGGTAGTCTCTTGGCATTTGATGAAAATACTTTGACGTGTATATGATGCTTACTTCATAGATTGCTTTTCATAGTAAGGAATATATTAACTAGAAAATGTATGGAAAACATACCTGTAAAGGTGGCATTTATGTTTCCA-GGTTCTGTTTCAGAATTGAGCTCGTCACATGCATCACTAATCGTTGAGTTTGTGTTTTGAGAGAAAGAAAAACCTTTAGCTGCGTTTTTCAAATGTGGAATGTCGGACCCAGATCGGTCTGCTTGTGAACACGATACTCGTTGTGATAGCGTTAGAGGAAGAATTGAAGTCCCAGTTGAGCTCGTAGGCAGATCTTTTAGTGCATCATTATCTTTTCTTGCTAACCTGATAAGCCGTGATATTAAACTTTGACTGGACGACTCATCAACTCCAGTGATAACAGATTCTTGGGAAGTTAGAATTATTGTGTTTAAGTCGTTATCGGCCCACTCAGCGAACAACTGACGAGAAAATCCACAACTAAGATCGGAAAGTGATGAAAGAACAACTTTAGGCTCTGAAACAGCATCTAACTGTTCTAACGTGTGACACAACTGCATATGCCGGAAATGAAACGGATTACTCCGTTGAT-CCTCAAAAGATCGCATTACTTTTTCGGACATCCACTCAACCATTGACTTTGCAAAATCCACAACATTTAAAGCTACATAATTTAGCATCGCCAATCCATAAGCCATTAGGCCAGATTCTTGGTTTAGCCAACATTGTTCTTAAAAATGGGCT] [+] EMBL CD200658 [TGCTACGTCTATTGAAAGCTAGTGAAGGTCTAATTGCTATAATTTCAACGGGCAACAGAGTTTATACGACAAGCATTAAAACTGGAAATAACTAATAACCAAGGTAAAAATTGTTCACAAAGCAACTAAGACGTAATCTGTCGAAGTGCTTACATATGGTCGTATACGCAATGATCCATATCAGTAAAATCTTAGTGACTGATTTCATGTAGTAAAGATAAGCACTACTGTTTATGTGAAAAACTGCGGCAAAATTTCCAGAGACTTTTGAGCTATATCTGATGTTGTTTTAACCCACTTGGTTGCAAGAACCCAAAAATAGTGTAACGACGACTTCGGTAGTCTCTTGGCATTTGATGAAAATACTTTGACGTGTATATGATGCTTACTTCATAGATTGCTTTTCATAGTAAGGAATATATTAACTAGAAAATGTATGGAAAACATACCTGTAAAGGTGGCATTTATGTTTCCA GGTTCTGTTTCAGAATTGAGCTCGTCACATGCATCACTAATCGTTGAGTTTGTGTTTTGAGAGAAAGAAAAACCTTTAGCTGCGTTTTTCAAATGTGGAATGTCGGACCCAGATCGGT ] [-] EMBL CD125603 [ gTTCCAGGGTTCTGTTCNAGAATTGAGCTCGTCACATGCATCACTAATCGTTGAGTTTGTGTTNTGAGAGAAAGAAAAACCTTTAGCTGCGTTTTTCAAATGTGGAATGTCGGACCCAGATCGGTCTGCTTGTGAACACGATACTCGTTGTGATAGCGTTAGAGGAAGAATTGAAGTCCCAGTTGAGCTCGTAGGCAGATCTTTTAGTGCATCATTATCTTTTCTTGCTAACCTGATAAGCCGTGATATTAAACTTTGACTGGACGACTCATCAACTCCAGTGATAACAGATTCTTGGGAAGTTAGAATTATTGTGTTTAAGTC ] [+] EMBL CD198592 [ GATCGGTCTGCTTGTGAACACGATACTCGTTGTGATAGCGTTAGAGGAAGAATTGAAGTCCCAGTTGAGCTCGTAGGCAGATCTTTTAGTGCATCATTATCTTTTCTTGCTAACCTGATAAGCCGTGATATTAAACTTTGACTGGACGACTCATCAACTCCAGTGATAACAGATTCTTGGGAAGTTAGAATTATTGTGTTTAAGTCGTTATCGGCCCACTCAGCGAACAACTGACGAGAAAATCCACAACTAAGATCGGAAAGTGATGAAAGAACAACTTTAGGCTCTGAAACAGCATCTAACTGTTCTAACGTGTGACACAACTGCATATGCCGGAAATGAAACGGATTACTCCGTTGAT CCTCAAAAGATCGCATTACTTTTTCGGACATCCACTCAACCATTGACTTTGCAAAATCCACAACA ] [+] EMBL CD142404 [ GATCGGTCTGCTTGTGAACACGATACTCGTTGTGATAGCGTTAGAGGAAGAATTGAAGTCCCAGTTGAGCTCGTAGGCAGATCTTTTAGTGCATCATTATCTTTTCTTGCTAACCTGATAAGCCGTGATATTAAACTTTGACTGGACGACTCATCAACTCCAGTGATAACAGATTCTTGGGAAGTTAGAATTATTGTGTTTAAGTCGTTATCGGCCCACTCAGCGAACAACTGACGGGAAAATCCACAACTAAGATCGGAGAGTGATGAAAGAAC ACTTTAGGCTCTGAAACAGCATCTAACTGTTCTAACGTGTGACACAACTGCATATGCCGNGAATGAAACGGATTACTCCGTTGATCCCTCA ] [+] EMBL CD125595 [ ATTATTGTGTTTAAGTCGTTATTGGCCCACTCAGCGAACAACTGACGAGAAAATCCACAACTAAGATCGGAAAGTGATGAAAGAACAACTTTAGGCTCTGAAACAGCATCTAACTGTTCTAACGTGTGACACAGCTGCATATGCCGGAAATGAAACGGATTACTCCGTTGAT CCTCAAAAGATCGCATTACTTTTTCGGACATCCACTCAACCATTGACTTTGCAAAATCCACAACATTTAAAGCTACATAATTTAGCATCGCCAATCCATAAGCCATTAGGCCAGATTCTTGGTTTAGCCAACATTGTTCTTAAAAATGGGCT] consensusID : consensus_9571#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 728 fasta sequence [AGCCCTGGATATATGTCATATCCAGCTTGATGCCTCCAGAAAGTTAAGTGAANGGTTGTGACTNCAAATTGTTCCATATTANNAGGTATACAAGTCTTAGGAAATAACCTAGTCGTATGCTGGAACAAATGTTTTCTTCGAATGATCTCTTGGTACGGACAACGTAAGAGAGAGTGATTTTGATTTTTCTATGTGAGTACCTTCCTCTGAACCATATGGGCGATTCGAACCACATGTTGATTCATTTTCCAATTCAGAATTACAAGATGGTTGCTTCTCAAGGATTCCTTCGGCAACTTGTGGTGAAACATCACTATGAGTAATATCACTTGCCGATGGCATCGGGATGTCTGTAAAGGTGGCATTTATGTTTCCAGGTTCTGTTTCAGAATTGAGCTCGTCACATGCATCACTAATCGTTGAGTTTGTGTTTTGAGAGAAAGAAAAACCTTTAGCTGCGTTTTTCAAATGTGGAATGTCGGACCCAGATCGGTCTGCTTGTGAACACGATACTCGTTGTGATAGCGTTAGAGGAAGAATTGAAGTCCCAGTTGAGCTCGTAGGCAGATCTTTTAGTGCATCATTATCTTTTCTTGCTAACCTGATAAGCCGTGATATTAAACTTTGACTGGACGACTCATCAACTCCAGTGATACCAGATTCTTGGGAAGTTAGAATTATTGTGTTTAAGTCGTTATCGGCCCACTCAGCGAACAACTGACGAGAAA] [-] EMBL CD199056 [AGCCCTGGATATATGTCATATCCAGCTTGATGCCTCCAGAAAGTTAAGTGAANGGTTGTGACTNCAAATTGTTCCATATTANNAGGTATACAAGTCTTAGGAAATAACCTAGTCGTATGCTGGAACAAATGTTTTCTTCGAATGATCTCTTGGTACGGACAACGTAAGAGAGAGTGATTTTGATTTTTCTATGTGAGTACCTTCCTCTGAACCATATGGGCGATTCGAACCACATGTTGATTCATTTTCCAATTCAGAATTACAAGATGGTTGCTTCTCAAGGATTCCTTCGGCAACTTGTGGTGAAACATCACTATGAGTAATATCACTTGCCGATGGCATCGGGATGTCTGTAAAGGTGGCATTTATGTTTCCAGGTTCTGTTT ] [-] EMBL CD199030 [ gctTGGAACAATTGTTTCTTTCGAATGATCTCTTGGTACGGACAACGTAAGAGAGAGTGATTTTGATTTTTCTATGTGAGTACCTTCCTCTGAACCATATGGGCGATTCGAACCACATGTTGATTCATTTTCCAATTCAGAATTACAAGACGGTTGCTTCTCAAGGATTCCTTCGGCAACTTGTGGTGAAACATCACTATGAGTAATATCACTTGCCGATGGCATCGGGATGTCTGTAAAGGTGGCATTTATGTTTCCAGGTTCTGTTT ] [-] EMBL AI976401 [ TGATCTCTTGGTACGGACAACGTAAGAGAGAGTGATTTTGATTTTTCTATGTGAGTACCTTCCTCTGAACCATATGGGCGATTCGAACCACATGTTGATTCATTTTCCAATTCAGAATTACAAGATGGTTGCTTCTCAAGGATTCCTTCGGCAACTTGTGGTGAAACATCACTATGAGTAATATCACTTGCCGATGGCATCGGGATGTCTGTAAAGGTGGCATTTATGTTTCCAGGTTCTGTTTCAGAATTGAGCTCGTCACATGCATCACTAATCGTTGAGTTTGTGTTTTGAGAGAAAGAAAAACCTTTAGCTGCGTTTTTCAAATGTGGAATGTCGGACCCAGATCGGTCTGCTTGTGAACACGATACTCGTTGTGATAGCGTTAGAGGAAGAATTGAAGTCCCAGTTGAGCTCGTAGGCAGATCTTTTAGTGCATCATTATCTTTTCTTGCTAACCTGATAAGCCGTGATATTAAACTTTGACTGGACGACTCATCAACTCCAGTGATACCAGATTCTTGGGAAGTTAGAATTATTGTGTTTAAGTCGTTATCGGCCCACTCAGCGAACAACTGACGAGAAA] [-] EMBL AI976403 [ TTGCCAATGGCATCGGGATGTCTGTAATGGTGGCATTTATGTTTCCAGGTTCTGTTTCAAAATTGAGCTCGTCACATGCATCACTAATCGTTGAGTTTGTGTTTTGAGAGAAAGAAAAACCTTTATCTGCGTTTTTCAAATGTGGAATGTCGGACCCAGATCGGTCTGATTGTGAACACGATACTCGTTGTGATAGCGTTAGAGTAAGAATTGAAGTCCCAGTTGAGCTCGTAGGCAGATCTTTTAGTGCATCATTATCTT ] consensusID : consensus_9571#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 246 fasta sequence [GAAAACAATTGTTCCAAGCAATACGACTAGGTTATTTCCTAAGACTTGTATACCTTTAAATATGGAACAATTTGGAGTCACAAACCTTCACTTAACTTCTGGAAGGCATCAAGCTGGATATGACATATATCCAGGGCTTCATAACCAAGCTGGTGGGCAGTTTTTCCGTGTGGCTAAACGGACTCAATTGCTGTTCCCTCAAAATGAAAAGAAGATTCACTGGGACGAATATGGAGCACATCTTGA] [+] EMBL CD179749 [GAAAACAATTGTTCCAAGCAATACGACTAGGTTATTTCCTAAGACTTGTATACCTTTAAATATGGAACAATTTGGAGTCACAAACCTTCACTTAACTTCTGGAAGGCATCAAGCTGGATATGACATATATCCAGGGCTTCATAACCAAGCTGGTGGGCAGTTTTTCCGTGTGGCTAAACGGACTCAATTGCTGTTCCCTCAAAATGAAAAGAAGATTCACTGGGACGAATATGGAGCACATCTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9571#0 TGCTACGTCTATTGAAAGCTAGTGAAGGTCTAATTGCTATAATTTCAACGGGCAACAGAG 60 consensus_9571#1 ------------------------------------------------------------ consensus_9571#2 ------------------------------------------------------------ consensus_9571#0 TTTATACGACAAGCATTAAAACTGGAAATAACTAATAACCAAGGTAAAAATTGTTCACAA 120 consensus_9571#1 -----------------AGCCCTGGATATATGTCATATCCAGCTTGATGCCT--CCAGAA 41 consensus_9571#2 ------------------------------------------------------------ consensus_9571#0 AGC-AACTAAGACGTAATCTGTCGAAGTGCTTACATATGGTCGTATACGCAATGATCCAT 179 consensus_9571#1 AGTTAAGTGAANGGTTGTGACTNCAAATTGTTCCATATTANNAGGTATACAA--GTCTTA 99 consensus_9571#2 ------------------------------------------------------------ consensus_9571#0 ATCAGTAAAATCTTAGTGACTGATTTCATGTAGTAAAGATAAGCACTACTGTTTATGTGA 239 consensus_9571#1 GGAAATAACCTAGTCGTATGCTGGAACAAATGTTTTCTTCGAATGAT-CTCTTGGTACGG 158 consensus_9571#2 ------------------------------------------------------------ consensus_9571#0 AAAACTGCGGCAAAATTTCCAGAGACTTTTGAGCTATATCTG-ATGTTGTTTTAACCCAC 298 consensus_9571#1 ACAACGTAAGAGAGAGTGATTTTGATTTTT---CTATGTGAGTACCTTCCTCTGAACCAT 215 consensus_9571#2 ------------------------------------------------------------ consensus_9571#0 TTGGTTGCAAGAACCCAAAAATAGTGTAACGACGACTTCGGTAGTCTCTTGGCATTTGAT 358 consensus_9571#1 ATGGGCG-----ATTCGAACCACATGT--TGATTCATTTTCCAAT---TCAGAATTACAA 265 consensus_9571#2 ------------------------------------------------------------ consensus_9571#0 GAAAATACTTTGACGTGTATATGATGCTTACTTCATAGATTGCTTTTCATAGTAAGGAAT 418 consensus_9571#1 GATGGTTGCTTCTCAAGGATTCCTTCGGCAACTTGT-GGTGAAACATCACTATGAGTAAT 324 consensus_9571#2 ------------------------------------------------------------ consensus_9571#0 ATATTAACTAGAAAATGTATGGAAAACATACCTGTAAAGGTGGCATTTATGTTTCCAGGT 478 consensus_9571#1 A--TCACTTGCCGATGGCATCGGG---ATGTCTGTAAAGGTGGCATTTATGTTTCCAGGT 379 consensus_9571#2 ------------------------------------------------------------ consensus_9571#0 TCTGTTTCAGAATTGAGCTCGTCACATGCATCACTAATCGTTGAGTTTGTGTTTTGAGAG 538 consensus_9571#1 TCTGTTTCAGAATTGAGCTCGTCACATGCATCACTAATCGTTGAGTTTGTGTTTTGAGAG 439 consensus_9571#2 --------GAAAACAA--TTGTTCCAAGCAATACGACTAGGT-------TATTTCCTAAG 43 ** * * ** ** *** ** * * * * * *** ** consensus_9571#0 AAAGAAAAACCTTTAGCTGCGTTTTTCAAATGTGGAATGTCGGACCCAGATCGGTCTGCT 598 consensus_9571#1 AAAGAAAAACCTTTAGCTGCGTTTTTCAAATGTGGAATGTCGGACCCAGATCGGTCTGCT 499 consensus_9571#2 ACTTGTATACCTTTAAATATGGAAC---AATTTGGAGTCACAAACCTTCACTTAACTTCT 100 * * ******* * * *** **** * * *** * ** ** consensus_9571#0 TGTGAACACGATACTCGTTGTGATAGCGTTAGAGGAAGAATTGAAGTCCCAGTTGAGCTC 658 consensus_9571#1 TGTGAACACGATACTCGTTGTGATAGCGTTAGAGGAAGAATTGAAGTCCCAGTTGAGCTC 559 consensus_9571#2 GGAAGGCATCAAGCTGGATATGACA----TATATCCAGGGCT----TCATAACCAAGCTG 152 * ** * ** * * *** * ** * ** * ** * **** consensus_9571#0 GTAGGCAGATCTTTTA-GTGCATCATTATCTTTTCTTGCTAACCTGATAAGCCGTGATAT 717 consensus_9571#1 GTAGGCAGATCTTTTA-GTGCATCATTATCTTTTCTTGCTAACCTGATAAGCCGTGATAT 618 consensus_9571#2 GTGGGCAGTTTTTCCGTGTGGCTAAACGGACTCAATTGCTGTTCCCTCAAA--ATGAAAA 210 ** ***** * ** *** * * * ***** * ** *** * consensus_9571#0 TAAACTTTGACTGGACGACTCATCAACTCCAGTGATAACAGATTCTTGGGAAGTTAGAAT 777 consensus_9571#1 TAAACTTTGACTGGACGACTCATCAACTCCAGTGATACCAGATTCTTGGGAAGTTAGAAT 678 consensus_9571#2 GAAGATTCACTGGGACGAAT-ATGGAGCACATCTTGA----------------------- 246 ** ** ****** * ** * ** * consensus_9571#0 TATTGTGTTTAAGTCGTTATCGGCCCACTCAGCGAACAACTGACGAGAAAATCCACAACT 837 consensus_9571#1 TATTGTGTTTAAGTCGTTATCGGCCCACTCAGCGAACAACTGACGAGAAA---------- 728 consensus_9571#2 ------------------------------------------------------------ consensus_9571#0 AAGATCGGAAAGTGATGAAAGAACAACTTTAGGCTCTGAAACAGCATCTAACTGTTCTAA 897 consensus_9571#1 ------------------------------------------------------------ consensus_9571#2 ------------------------------------------------------------ consensus_9571#0 CGTGTGACACAACTGCATATGCCGGAAATGAAACGGATTACTCCGTTGATCCTCAAAAGA 957 consensus_9571#1 ------------------------------------------------------------ consensus_9571#2 ------------------------------------------------------------ consensus_9571#0 TCGCATTACTTTTTCGGACATCCACTCAACCATTGACTTTGCAAAATCCACAACATTTAA 1017 consensus_9571#1 ------------------------------------------------------------ consensus_9571#2 ------------------------------------------------------------ consensus_9571#0 AGCTACATAATTTAGCATCGCCAATCCATAAGCCATTAGGCCAGATTCTTGGTTTAGCCA 1077 consensus_9571#1 ------------------------------------------------------------ consensus_9571#2 ------------------------------------------------------------ consensus_9571#0 ACATTGTTCTTAAAAATGGGCT 1099 consensus_9571#1 ---------------------- consensus_9571#2 ---------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||