cluster # 9573

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Schistosoma mansoni
cluster # 9573 cluster # 9573 Sequences # 10 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9573#0 length = 465 sequences # 3

consensus_9573#1 length = 464 sequences # 1
consensus_9573#2 length = 371 sequences # 6

consensusID : consensus_9573#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 465
fasta sequence

                              [ATTTATAGTATTATATTAATTAAGATGATAATGCAGAAAGCTTCGAATAAAAAAAACTGCAAAGAATAAAGACGTTCTGATTCGGGAAAGGCGCATATTACATGTGCGAAACATTTATCGGTGATCAGTGGATAGCTTTTTCTGCAGCAATGTCTTCCTTGGTAGGAAGAGGGTTCTTTTCTTTTGTTGAAGTACGTTTCAAAGAATGTGGTGTTTCGATCTCTTGTAGAAGCTGTTTCTCAGTTTTCTCCTTCTCAATAACTGCAAAGAAGGGACAAACAAAATTATTGGTTTGAAGTTGGGTTACTAATCTTGTGTTGCTTCATTATCGAATTATGTAACGAGGCAAAACGTCCCACCTGGTAAGCTTTGTTGTACGTAATCTTACTTTATTGTCTTTTTAATTGTGATATGTACGTACAACAAAGCTTACCAGTGGGCCTCGTGCCGAATCTTGGCTCGGAG]

[+] EMBL CD076345             [ATTTATAGTATTATATTAATTAAGATGATAATGCAGAAAGCTTCGAATAAAAAAAACTGCAAAGAATAAAGACGTTCTGATTCGGGAAAGGCGCATATTACATGTGCGAAACATTTATCGGTGATCAGTGGATAGCTTTTTCTGCAGCAATGTCTTCCTTGGTAGGAAGAGGGTTCTTTTCTTTTGTTGAAGTACGTTTCAAAGAATGTGGTGTTTCGATCTCTTGTAGAAGCTGTTTCTCAGTTTTCTCCTTCTCAATAACTGCAAAGAAGGGACAAACAAAATTATTGGTTTGAAGTTGGGTTACTAATCTTGTGTTGCTTCATTATCGAATTATGTAACGAGGCAAAACGTCCCACCTGGTAAGCTTTGTTGTACGTAATCTTACTTTATTGTCTTTTTAATTGTGATATGTACGTACAACAAAGCTTACCAGTGG                          ]
[-] EMBL CD082755             [ TTTATAGTATTATATTAATTAAGATGATAATGCAGAAAGCTTCGAATAAAAAAAACTGCAAAGAATAAAGACGTTCTGATTCGGGAAAGGCGCATATTACATGTGCGAAACATTTATCGGTGATCAGTGGATAGCTTTTTCTGCAGCAATGTCTTCCTTGGTAGGAAGAGGGTTCTTTTCTTTTGTTGAAGTACGTTTCAAAGAATGTGGTGTTTCGATCTCTTGTAGAACCTGTTTCTCAGTTTTCTCCTTCTCAATAACTGCAAAGAAGGGACAAACAAAATTATTGGTTTGAAGTTGGGTTACTAATCTTGTGTTGCTTCATTATCGAATTATGTAACGAGGCAAAACGTCCCA CTGGTAAGCTTTGTTGTACGTAATCTCACTTTATTGTCTTTTTAATTGTGATATGTACGTACAACAAAGCTTACCAGTGGGCCTCGTGCCGAATCTTGGCTCGGAG]
[-] EMBL AW186592             [ TTTATAGTATTATATTAATTAAGATGATAATGCAGAAAGCCTCGAATAAAAAAAACTGCAAAGAATAAAGACGTTCTGATTCGGGAAAGGCGCATATTACATGTGCGAAACATTTATCGGTGATCAGTGGATAGCTTTTTCTGCAGCAATGTCTTCCTTGGTAGGAAGAGGGTTCTTTTCTTTTGTTGAAGTACGTTTCAAAGAATGTGGTGTTT                                                                                                                                                                                                                                                         ]




>consensus_9573#0
ATTTATAGTATTATATTAATTAAGATGATAATGCAGAAAGCTTCGAATAAAAAAAACTGC
AAAGAATAAAGACGTTCTGATTCGGGAAAGGCGCATATTACATGTGCGAAACATTTATCG
GTGATCAGTGGATAGCTTTTTCTGCAGCAATGTCTTCCTTGGTAGGAAGAGGGTTCTTTT
CTTTTGTTGAAGTACGTTTCAAAGAATGTGGTGTTTCGATCTCTTGTAGAAGCTGTTTCT
CAGTTTTCTCCTTCTCAATAACTGCAAAGAAGGGACAAACAAAATTATTGGTTTGAAGTT
GGGTTACTAATCTTGTGTTGCTTCATTATCGAATTATGTAACGAGGCAAAACGTCCCACC
TGGTAAGCTTTGTTGTACGTAATCTTACTTTATTGTCTTTTTAATTGTGATATGTACGTA
CAACAAAGCTTACCAGTGGGCCTCGTGCCGAATCTTGGCTCGGAG

consensusID : consensus_9573#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 464
fasta sequence

                              [GTCTAAAACGAAAAACAAGAGTTTTAGTGAACTGTTACACAAAACTTTGTGGTTAGAATGCAATTTCAGTAAGTCCCATAGAAGTGTCTTACCTTCCTTGGTAGGAAGAGGGTTCTTTTCTTTTGTTGAAGTACGTTTCAAAGAATGTGGTGTTTCGATCTCTTGTAGAAGCTGTTTCTCAGTTTTCTCCTTCTCAATAACTGCAAAGAAGGGACAAACAAAATTATTGGTTTGAAGTTGGGTTACTAATCTTGTGTTGCTTCATTATCGAATTATGTAACGAGGCAAAACGTCCCACTGGTAAGCTTTGTTGTACGTACATATCACAATTAAAAAGACAATAAAGTAAGATTACGACAAACAAGTGCAGCCTGTTTCGTGAAGTACTTGAATATCCCATGAGCTTGGGTATTATTTCCCTTAATATTTACATTGGCCCTCGTGCCGATTCTGCCTCTGAGGCC]

[-] EMBL CD083868             [GTCTAAAACGAAAAACAAGAGTTTTAGTGAACTGTTACACAAAACTTTGTGGTTAGAATGCAATTTCAGTAAGTCCCATAGAAGTGTCTTACCTTCCTTGGTAGGAAGAGGGTTCTTTTCTTTTGTTGAAGTACGTTTCAAAGAATGTGGTGTTTCGATCTCTTGTAGAAGCTGTTTCTCAGTTTTCTCCTTCTCAATAACTGCAAAGAAGGGACAAACAAAATTATTGGTTTGAAGTTGGGTTACTAATCTTGTGTTGCTTCATTATCGAATTATGTAACGAGGCAAAACGTCCCACTGGTAAGCTTTGTTGTACGTACATATCACAATTAAAAAGACAATAAAGTAAGATTACGACAAACAAGTGCAGCCTGTTTCGTGAAGTACTTGAATATCCCATGAGCTTGGGTATTATTTCCCTTAATATTTACATTGGCCCTCGTGCCGATTCTGCCTCTGAGGCC]




>consensus_9573#1
GTCTAAAACGAAAAACAAGAGTTTTAGTGAACTGTTACACAAAACTTTGTGGTTAGAATG
CAATTTCAGTAAGTCCCATAGAAGTGTCTTACCTTCCTTGGTAGGAAGAGGGTTCTTTTC
TTTTGTTGAAGTACGTTTCAAAGAATGTGGTGTTTCGATCTCTTGTAGAAGCTGTTTCTC
AGTTTTCTCCTTCTCAATAACTGCAAAGAAGGGACAAACAAAATTATTGGTTTGAAGTTG
GGTTACTAATCTTGTGTTGCTTCATTATCGAATTATGTAACGAGGCAAAACGTCCCACTG
GTAAGCTTTGTTGTACGTACATATCACAATTAAAAAGACAATAAAGTAAGATTACGACAA
ACAAGTGCAGCCTGTTTCGTGAAGTACTTGAATATCCCATGAGCTTGGGTATTATTTCCC
TTAATATTTACATTGGCCCTCGTGCCGATTCTGCCTCTGAGGCC

consensusID : consensus_9573#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 371
fasta sequence

                              [ATTTATAGTATTATATTAATTAAGATGATAATGCAGAAAGCTTCGAATAAAAAAAACTGCAAAGAATAAAGACGTTCTGATTCGGGAAAGGCGCATATTACATGTGCGAAACATTTATCGGTGATCAGTGGATAGCTTTTTCTGCAGCAATGTCTT-CCTTGGTAGG-AAGAGGGTTCTTTTCTTTTGTTGAAGTACGTTTCAAAGAATGTGGTGTTTCGATCTCTTGTAGAAGCTGTTTCTCAGTTTTCTCCTTCTCAATAACTTCTTTGTTTGGCAATACAACTTTTTCTTCAGTTTCAACATGCCGTAATTTCTGTTTGTCAAAACTGTCGATAT-CCTCTAGTACTCTCCCCCCGTCCATCACAATACCA]

[+] EMBL AA999540             [ATTTATAGTATTATATTAATTAAGATGATAATGCAGAAAGCTTCGAATAAAAAAAACTGCAAAGAATAAAGACGTTCTGATTCGGGAAAGGCGCATATTACATGTGCGAAACATTTATCGGTGATCAGTGGATAGCTTTTTCTGCAGCAATGTCTT CCTTGGTAGG AAGAGGGTTCTTTTCTTTTGTTGAAGTACGTTTCAAAGAATGTGTTGTTTCGATCTCTTGTAGAAGCTGTTTCTCAGTTTTCTCCTTCTCAATAACTTCTTTGTTTGGCAATACAAC                                                                                         ]
[-] EMBL SMAA43890            [ TTTATAGTATTATATTAATTAAGATGATAATGCAGAAAGCTTCGAATAAAAAAAACTGCAAAGAATAAAGACGTTCTGATTCGGGAAAGGCGCATATTACATGTGCGAAACATTTATCGGTGATCAGTGGATAGCTTTTTCTGCAGCAATGTCTT CCTTGGTAGGAAAGAGGGTTCTTTTCTTTTGTTGAAGTACGTTTCAAAGAATGTGGTGTTTCGATCTCTTGTAGAAGCTGTTTCTCAGTTTTCTCCTTCTCAATAACTTCTTTGTTTGGCAATACAACTTTTTCTTCAGTTTCAACATGCCGTAATTTCTGTTTGTCAAAACTGTCGATAT CCTCT                              ]
[-] EMBL AA559370             [    ATAGTATTATATTAATTAAGNTGATAATGCAGAAAGCTTCGAATAAAAAAAACTGCAAAGAATAAAGACGTTCTGATTCGGGAAAGGCGCATATTACATGTGCGAAACATTTATCGGTGATCAGTGGATAGCTTTTTCTGCAGCAATGTCTTCCCTTGGTAGG NAGAGGGTTCTTTTCTTTTGTTGAAGTACGTTTCAAAGAATGTGGTGTTTCGATCTCTTGTAGAAGCTGTTTCTCAGTTTTCTCCTTCTCAATAACTTCTTTGTTTGGCAATACAACTTTTTNTTCAGTTTCAACATGCCGTAATTTCTGTTTGTCAAAACTGTCGATATCCCTTTAGTACTTTACC                   ]
[+] EMBL BG932506             [                                      AGCTTCGAATAAAAAAAACTGCAAAGAATAAAGACGTTCTGATTCGGGAAAGGCGCATATTACATGTGCGAAACATTTATCGGTGATCAGTGGATAGCTTTTTCTGCAGCAATGTCTT CCTTGGTAGG AAGAGGGTTCTTTTCTTTTGTTGAAGTACGTTTCAAAGAATGTGGTGTTTCGATCTCTTGTAGAAGCTGTTTCTCAGTTTTCTCCTTCTCAATAACTTCTTTGTTTGGCAATACAACTTTTTCTTCAGTTTCAACATGCCGTAATTTCTGTTTGTCAAAACTGTCGATAT CCTCTAGTACTCTCCCCCCGTCCATCACAATACCA]
[-] EMBL BG932480             [                                                                                       agGGCGCATATTACATGTGCGAAACATTTATCGGTGATCAGTGGATAGCTTTTTCTGCAGCAATGTCTT CCTTGGTAGG AAGAGGGTTCTTTTCTTTTGTTGAAGTACGTTTCAAAGAATGTGGTGTTTCGATCTCTTGTAGAAGCTGTTTCTCAGTTTTCTCCTTCTCAATAACTTCTTTGTTTGGCAATACAACTTTTTCTTCAGTTTCAACATGCCGTAATTTCTGTTTGTCAAAACTGTCGATAT CCTCTAGTACTCTC                     ]
[+] EMBL BG932487             [                                                                                                                                    gAGCTTTTTCTGCAGCAATGTCTT CCTTGGTAGG AAGAGGGTTCTTTTCTTTTGTTGAAGTACGTTTCAAAGAATGTGGTGTTTCGATCTCTTGTAGAAGCTGTTTCTCAGTTTTCTCCTTCTCAATAACTTCTTTGTTTGGCAATACAACTTTTTCTTCAGTTTCAACATGCCGTAATTTCTGTTTGTCAAAACTGTCGATAT CCTCTAGTACTCT                      ]




>consensus_9573#2
ATTTATAGTATTATATTAATTAAGATGATAATGCAGAAAGCTTCGAATAAAAAAAACTGC
AAAGAATAAAGACGTTCTGATTCGGGAAAGGCGCATATTACATGTGCGAAACATTTATCG
GTGATCAGTGGATAGCTTTTTCTGCAGCAATGTCTTCCTTGGTAGGAAGAGGGTTCTTTT
CTTTTGTTGAAGTACGTTTCAAAGAATGTGGTGTTTCGATCTCTTGTAGAAGCTGTTTCT
CAGTTTTCTCCTTCTCAATAACTTCTTTGTTTGGCAATACAACTTTTTCTTCAGTTTCAA
CATGCCGTAATTTCTGTTTGTCAAAACTGTCGATATCCTCTAGTACTCTCCCCCCGTCCA
TCACAATACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9573#0      ATTTATAGTATTATATTAATTAAGATGATAATGCAGAAAGCTTCGAATAAAAAAAACTGC 60
consensus_9573#2      ATTTATAGTATTATATTAATTAAGATGATAATGCAGAAAGCTTCGAATAAAAAAAACTGC 60
consensus_9573#1      -----------------------------------------GTCTAAAACGAAAAAC--- 16
                                                                ** ** *  ******   

consensus_9573#0      AAAGAATAAAGACGTTCTGATTCGGGAAAGGCGCATATTACATGTGCGAAACATTTATCG 120
consensus_9573#2      AAAGAATAAAGACGTTCTGATTCGGGAAAGGCGCATATTACATGTGCGAAACATTTATCG 120
consensus_9573#1      -AAGAGTTTTAGTGAACTGTTACACAAAA------CTTTGTGGTTAGAATGCAATT-TCA 68
                       **** *      *  *** * *   ***        **     *   *  ** ** ** 

consensus_9573#0      GTGATCAGTGGATAGCTTTTTCTGCAGCAATGTCTTCCTTGGTAGGAAGAGGGTTCTTTT 180
consensus_9573#2      GTGATCAGTGGATAGCTTTTTCTGCAGCAATGTCTTCCTTGGTAGGAAGAGGGTTCTTTT 180
consensus_9573#1      GTAAGTCCCATAGAAGTGTCT---------TACCTTCCTTGGTAGGAAGAGGGTTCTTTT 119
                      ** *       * *  * * *         *  ***************************

consensus_9573#0      CTTTTGTTGAAGTACGTTTCAAAGAATGTGGTGTTTCGATCTCTTGTAGAAGCTGTTTCT 240
consensus_9573#2      CTTTTGTTGAAGTACGTTTCAAAGAATGTGGTGTTTCGATCTCTTGTAGAAGCTGTTTCT 240
consensus_9573#1      CTTTTGTTGAAGTACGTTTCAAAGAATGTGGTGTTTCGATCTCTTGTAGAAGCTGTTTCT 179
                      ************************************************************

consensus_9573#0      CAGTTTTCTCCTTCTCAATAACTGCAAAGAAGGGACAAACAAAATTATT---GGTTTGAA 297
consensus_9573#2      CAGTTTTCTCCTTCTCAATAACTTCTTTGTTTGGCAATACAACTTTTTCTTCAGTTTCAA 300
consensus_9573#1      CAGTTTTCTCCTTCTCAATAACTGCAAAGAAGGGACAAACAAAATTATT---GGTTTGAA 236
                      *********************** *   *   **  * ****  ** *     **** **

consensus_9573#0      GTTGGGTTACTAATCTTGTGTTGCTTCATTATCGA-ATTATGTAACGAGGCAAAACGTCC 356
consensus_9573#2      --CATGCCGTAATTTCTGTTTGTCAAAACTGTCGATATCCTCTAGT--------ACTCTC 350
consensus_9573#1      GTTGGGTTACTAATCTTGTGTTGCTTCATTATCGA-ATTATGTAACGAGGCAAAACGTCC 295
                           *     * *  *** *  *   * * **** **  * **          **   *

consensus_9573#0      CACCTGGTAAGCTTTGTTGTACGTAATCTTACTTTATTGTCTTTTTAATTGTGATATGTA 416
consensus_9573#2      CCCCCGTCCATCACAATACCA--------------------------------------- 371
consensus_9573#1      CAC-TGGTAAGCTTTGTTGTACGTA----CATATCACAATTAAAAAGACAATAAAGTAAG 350
                      * *  *   * *    *   *                                       

consensus_9573#0      CGTACAACAAAGCTTACCAGTGGGCCTCGTGCCGAATCTTGGCTCGGAG----------- 465
consensus_9573#2      ------------------------------------------------------------
consensus_9573#1      ATTACGACAAACAAGTGCAGCCTGTTTCGTGAAGTACTTGAATATCCCATGAGCTTGGGT 410
                                                                                  

consensus_9573#0      ------------------------------------------------------
consensus_9573#2      ------------------------------------------------------
consensus_9573#1      ATTATTTCCCTTAATATTTACATTGGCCCTCGTGCCGATTCTGCCTCTGAGGCC 464