These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9577#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 642 fasta sequence [CCGCTCTGTGTGGATGAGACATGCTTCAGTCTGCAAATGTTCATTCTCTTGCTTTGTCCAAAATCATTAAGCCGGAC-AAAAAACCGGTCACCCCATTAGAAGAAGAAATTGCTCAAGCGATTATAGACTTACAGATTCATGATGACTGGTCTGACACCATGAAGCTTCTGTACTTTTGTGAAGCAAAAGAAATGACTATAGGTAAAGAAAAAGCGGTCGTTATATATGTACCTGTTCCACAACTACGGACATACCAGTTTATACATAACAGACTCGTAGGCGAGCTCGAAAAGAAGCTCCGTGGTCCTCATGTTGTGCTGTTGGCTTTCCGAAGAATCATTGCAAAGCCTAAAAGAAATTGCAAATTTAATCCGAAGCAAAAGCGTCCTAGAAGTAGGACCCTAACAGCTGTGCACGAAGCTATATTGAAAGATCTTGTTTACCCTGCTGAAATTGTAGGAAAACGCATTCAAGTCAGATGTGATGGAAGTACCTTAATCAAATGCCACTTGGATGTTGCACAGAGAAACTACATAGAACATAAGCTCAAAACTATCAC-GGGATTATACAAAAAG-TTGAC-GGGTAAAGACGTCCAGATCGAGTTTCCGGATTGGGTATTGTGAAAATATGTAATATAAGTTT] [+] EMBL CD113502 [CCGCTCTGTGTGGATGAGACATGCTTCAGTCTGCAAATGTTCATTCTCTTGCTTTGTCCAAAATCATTAAGCCGGACAAAAAAACCGGTCACCCCATTAGAAGAAGAAATTGCTCAAGCGATTATAGACTTACAGATTCATGATGACTGGTCTGACACCATGAAGCTTCTGTACTTTTGTGAAGCAAAAGAAATGACTATAGGTAAAGAAAAAGCGGTCGTTATATATGTACCTGTTCCACAACTACGGACATACCAGTTTATACATAACAGACTCGTAGGCGAGCTCGAAAAGAAGCTCCGTGGTCCTCATGTTGTGCTGTTGGCTTTCCGAAGAATCATTGCAAAGCCTAAAAGAAATTGCAAATTTAATCCGAAGCANAAGCGTCCTAGAAGTAGG ] [+] EMBL CD113414 [ GGATGAGACATGCTTCAGTCTGCAAATGTTCATTCTCTTGCTTTGTCCAAAATCATTAAGCCGGACAAAAAAACCGGTCACCCCATTAGAAGAAGAAATTGCTCAAGCGATTATAGACTTACAGATTCATGATGACTGGTCTGACA CATGAAGCTTCTGTACTTTTGTGAAGCAAAAGAAATGACTATAGGTAAAGAAAAAGCGGTCGTTATATATGTACCTGTTCCACAACTACGGACATACCAGTTTATACATAACAGACTCGTAGGCGAGCTCGAAAAGAAGCTCCGTGGTCCTCATGTTGTGCTGTTGGCTTTCCGAAGAATCATTGCAAAGCCTAAAAGAAATTGCAAATTTAATCCGAAGCAAAAGCGTCCTAGAAGTAGG ] [+] EMBL CD113599 [ gaGATGAGACATGCTTCAGTCTGCAAATGTTCATTCTCTTGCTTTGTCCAAAATCATTAAGCCGGACAAAAAAACCGGTCACCCCATTAGAAGAAGAAATTGCTCAAGCGATTATAGACTTACAGATTCATGATGACTGGTCTGACACCATGAAGCTTCTGTACTTTTGCGAAGCAAAAGAAATGACTATAGGTAAAGAAAAAGCGGTCGTTATATATGTACCTGTTCCACAACTACGGACATACCAGTTTATACATAACAGACTCGTATGCGAGCTCGAAAAGAAGCTCCGTGGTCCTCATGTTGTGCTGTTGGCTTTCCGAAGAATCATTGCATAGCCTACAAGAAATTGCAAATTTAATCCGAAGCACAAGCGTCCTAGAAGTAtg ] [+] EMBL AI975321 [ GACATGCTTCAGTCTGCAAATGTTCATTCTCTTGCTTTGTCCAAAATCATTAAGCCGGAC AAAAAGCCGGTCACCCCATTAGAAGAAGAAATTGCTCAAGCGATTATAGACTTACAGATTCATGATGACTGGTCTGACACCATGAAGCTTCTGTACTTTTGTGAAGCAAAAGAAATGACTATAGGTAAAGAAAAAGCGGTCGTTATATATGTACCTGTTCCACAACTACGGACATACCAGTTTATACATAACAGACTCGTAGGCGAGCTCGAAAAGAAGCTCCGTGGTCCTCATGTTGTGCTGTTGGCTTTCCGAAGAATCATTGCAAAGCCTAAAAGAAATTGCAAATTTAATCCGAAGCAAAAGCGTCCTAGAAGTAGGACCCTAACAGCTGTGCACGAAGCTATATTGAAAGATCTTGTTTACCCTGCTGAAATTGTAGGAAAACGCATTCAAGTCAGATGTGATGGAAGTACCTTAATCAAATGCCACTTGGATGTTGCACAGAGAAACTACATAGAACATAAGCTCAAAACTATCAC GGGATTATACAAAAAG TTGAC GGGTAAAGACGTCCAGATCGAGTTTCCGGATTGGGTATTGTGAAAATATGTAATATAAGTTT] [+] EMBL CD080272 [ aggTCAGTCTGCAAATGTTCATTCTCTTGCTTTGTCCAAAATCATTAAGCCGGAC AAAAAACCGGTCACCCCATTAGAAGAAGAAATTGCTCAAGCGATTATAGACTTACAGATTCATGATGACTGGTCTGACACCATGAAGCTTCTGTACTTTTGTGAAGCAAAAGAAATGACTATAGGTAAAGAAAAAGCGGTCGTTATATATGTACCTGTTCCACAACTACGGACATACCAGTTTATACATAACAGACTCGTAGGCGAGCTCGAAAAGAAGCTCCGTGGTCCTCATGTTGTGCTGTTGGCTTTCCGAAGAATCATTGCAAAGCCTAAAAGAAATTGCAAATTTAATCCGAAGCAAAAGCGTCCTAGAAGTAGGACCCTAACAGCTGTGCACGAAGCTATATTGAAAGATCTTGTTTACCCTGCTGAAATTGTAGGAAAACGCATTCAAGTCAGATGTGATGGAAGTACCTTAATCAAATGCCACTTGGATGTTGCACAGAGAAACTACATAGAACATAAGCTCAAAACTATCACGGGGATTATACAAAAAGTTTGACGGGGTAAAGA ] [+] EMBL AI977567 [ AAGCCGGTCACCCCATTAGAAGAAGAAATTGCTCAAGCGATTATAGACTTACAGATTCATGATGACTGGTCTGACACCATGAAGCTTCTGTACTTTTGTGAAGCAAAAGAAATGACTATAGGTAAAGAAAAAGCGGTCGTTATATATGTACCTGTTCCACAACTACGGACATACCAGTTTATACATAACAGACTCGTAGGCGAGCTCGAAAAGAAGCTCCGCGGTCCTCATGTTGTGCTGTTGGCTTTCCGAAGAATCATTGCAAAGCCTAACAGAAATTGCACATTTAATCCGAAGCAAAAGCGTCCTAGAAGTAGGACCCTAACAGCTGTGCACGAAGCTATATTGAAAGATCTTGTTTACCCTGCTGAAATTGTAGGAGAACGCATTCAAGTCAGATGTGATGCAAGTACCTTAATCNAATGCCACTTCGATGTTGCACAGAGAAACTACATAGAACATAAGCTCAAAACTATCAC ] [-] EMBL CD197152 [ CAAGCGATTATAGACTTACAGATTCATGATGACTGGTCTGACACCATGAAGCTTCTGTACTTTTGTGAAGCAAAAGAAATGACTATAGGTAAAGAAAAAGCGGTCGTTATATATGTACCTGTTCCACAACTACGGACATACCAGTTTGTACATAACAGACTCGTAGGCGAGCTCGAAAAGAAGCTCCGTGGTCCTCATGTTGTGCTGTTGGCTTTCCGAAGAATCATTGCAAAGCCTAAAAGAAATCGCAAATTTAATCCGAAGCAAAAGCGTCCTAGAAGTAGGACCCTAACAGCTGTGCACGAAGCTATATTGAAAGATCTTGTTTACCCTGCTGAAATTGTAGGAAAACGCATTCAAGTCAGATGTGATGGAAGTACCTTA ] [-] EMBL CD163657 [ CAGATTCATGATGACTGGTCTGACACCATGAAGCTTCTGTACTTTTGTGAAGCAAAAGAAATGACTATAGGTAAAGAAAAAGCGGTCGTTATATATGTACCTGTTCCACAACTACGGACATACCAGTTTATACATAACAGACTCGTAGGCGAGCTCGAAAAGAAGCTCCGTGGTCCTCATGTTGTGCTGTTGGCTTTCCGAAGAATCATTGCAAAGCCTAAAAGAAATTGCAAATTTAATCCGAAGCAAAAGCGTCCTAGAAGTAGGACCCTAACAGCTGTGCACGAAGCTATATTGAAAGATCTTGTTTACCCTGCTGAAATTGTAGGAAAACGCATTCAAGTCAGATGTGATGGAAGTACCTTAATCAAATGCCACTTGGATGTTGCACAGAGAAACTACATAGAACATAAGCTC ] [-] EMBL CD074190 [ CTTTTGTGAAGCAAAAGAAATGACTATAGGTAAAGAAAAAGCGGTCGTTATATATGTACCTGTTCCCCAACTACGGACATACCAGTTTATACATAACAGACTCGTAGGCGAGCTCGAAAAAAAGCTCCGTGGTCCTCATGTTGTGCTGTTGGCTTTCCGAAAAATCATTGCAAAGCCTAAAAAAAATTGCAAATTTAATCCGAAGCAAAAGCGTCCTAAAAGTAGGACCCTAACAGCTGTGCCCGAAGCTATATTGAAAGATTTTGTTTACCCTGCTGAAATTGTAGGAAAACGCATTCAAGTCAGATGTGATGGAAGTCCCTTAATCAAATGCCCCTTGGATGTTGCCCAAAGAAACTACATAGAACATAAGCTCAAAACTATCCC GGGATTATACAAAAAG TTGAC GGGTAAAAACGTCCAGATCGAGTTTCCGGATTGGGTATTGTGAAAATATGTAATATAAGT ] [-] EMBL SMAA40626 [ ACGGACATACCAGTTTATACATAACAGACTCGTAGGCGAGCTCGAAAAGAAGCTCCGTGGTCCTCATGTTGTGCTGTTGGCTTTCCGAAGAATCATCGCAAAGCCTAAAAGAAAATGCAAATTTAATCCGAAGCAAAAGCGNCCTAGAAGTAGGACCCTAACAGCTGTGCACGAAGCTATATTGAAAGATCTTGTTTACCCTGCTGAAATTGAAGGAAAANGCATTCAAGTCAGATGTGATGGAAGTACCTTAATCAAATCCNACTTGGATGTTGCACAGAGAAACTACATAGAACATAAGCTNAAAATTATCAC GGGATTATACAAAAAG TTGAC GGGTAAAGACGTCCAGATCGAGTTTCCGGATTGGGTATTGTGAAAATATGTAA ] clustalw multiple alignements is not computed in this case |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||