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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9579#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1138 fasta sequence
[AATATACGGGTAGATTTTATTTCTTTCCAGTAAATCTTTTAGCAATGGCTAGAGTTAGATAAAAGTGTCTATAAACAGCTCAAAGACTGTAAGTCTTTCGTGGTAAACTTCCGTGTGAAACATTATCCACCGGATCCTGTCAATGATTTGGCGCAAAGTATTTCCAGGTACTTGGTATATCTTCAAATACGTCGGGATTTGACTCAGGGACGTCTTTTGTGTCCCCCATCTATCGTTGGAGAACTTGGAGCACTGGTCGCACAAGCTGAAATCGGTGATGCACCGTCAGAACACGTAGAAACACCAAATAGTGATGTTAATCACTGTACACCACCTCTATATGACTCACGGTTGGATAGTGTGGAGTCTACTGAATCTACAAATATGTCCAACAATAATGATTGTGACCAGTGTATACAAGGAGAGACATTAAATTATACTGCATGCTGTGAGATGCTGCGTAAACTGAAAATAATATTCAACCAAACGCCGGAGGTTGAAGCACAAATAATGAAAGAATACCAAAAGCTTCGTGGTCTTAAAGCGGTTGATGCGGAAACTGAACTTCTCCGACGGGCATCACAGTTGCCGACTTATGGGATCGATCCTGTACCAGCTACGCCCATGCAAAAGGTTTATTTACCTGTTTCAACCTCAGCAACTGAAAACAATTCGCCGCCAAATGAAGTTAAAGCTACTAATGGAAAGCAAAACTCAGTCACATTGAGTCCTCAACCTGTAAATTTACCTGAAGGAGCTACTTTCTACTTGGGTATAACCAGTACAGGTGTAGTGACTTTTGTGGGGCGACAAAGAAATGCAGAATATACATGGGATCAAATTCATCGATTAGGCTGTGATGGAAAATTATTCCTAATTTACTTAAAAAGAGATCATAACCATACTGGACGAAAATTGTTCCGGACAAAATATATTCTGCATTCATTTCGGTGTAAATCTAAAACTGCAGCATTTGCTTTTTGGCATTGGGTTGTTGATACAAAATGCCTCTTCACTTTAAAACAAGCTAGTGAAGCAAAGAAAATCAACCCTACTACTAATATCTTCAGTCCAAGCCCGCCTTATTNATTTATTGGACGGGCACAACAAGAACTTCGAACCTCGCCCTGGATCTTTT]
[-] EMBL CD155992 [AATATACGGGTAGATTTTATTTCTTTCCAGTAAATCTTTTAGCAATGGCTAGAGTTAGATAAAAGTGTCTATAAACAGCTCAAAGACTGTAAGTCTTTCGTGGTAAACTTCCGTGTGAAACATTATCCACCGGATCCTGTCAATGATTTGGCGCAAAGTATTTCCAGGTACTTGGTATATCTTCAAATACGTCGGGATTTGACTCAGGGACGTCTTTTGTGTCCCCCATCTATCGTTGGAGAACTTGGAGCACTGGTCGCACAAGCTGAAATCGGTGATGCACCG ]
[-] EMBL CD155981 [AATATACGGGTAGATTTTATTTCTTTCCAGTAAATCTTTTAGCAATGGCTAGAGTTAGATAAAAGTGTCTATAAACAGCTCAAAGACTGTAAGTCTTTCGTGGTAAACTTCCGTGTGAAACATTATCCACCGGATCCTGTCAATGATTTGGCGCAAAGTATTTCCAGGTACTTGGTATATCTTCAAATACGTCGGGATTTGACTCAGGGACGTCTTTTGTGTCCCCCATCTATCGTTGGAGAACTTGGAGCACTGGTCGCACAAGCTGAAATCGGTGATGCACCG ]
[+] EMBL CD153764 [ ACTCAGGGACGTCTTTTGTGTCCCCCATCTATCGTTGGAGAACTTGGAGCACTGGTCGCACAAGCTGAAATCGGTGATGCACCGTCAGAACACGTAGAAACACCAAATAGTGATGTTAATCACTGTACACCACCTCTATATGACTCACGGTTGGATAGTGTGGAGTCTACTGAATCTACAAATATGTCCAACAATAATGATTGTGACCAGTGTATACAAGGAGAGACATTAAATTATACTGCATGCTGTGAGATGCTGCGTAAACTGAAAATAATATTCAACCAAACGCCGGAGGTTGAAGCACAAATAATGAAAGAATACCAAAAGCTTCGTGGTCTTAAAGCGGTTGATGCGGAAACTGAACTTCTCCGACGGGCATCACAGTTGCCGACTTATGGGATCGATCCTGTACCAGCTACGCCCATGCAAAAGGTTTATTTACCTGTTTCAACCTCAGCAACTGAAAACAATTCGCCGCCAAATGAAGTTAAAGCTACTAATGGANAGCANAACTCAGTCACATTGAGTCCTCAACCTGTAAATTTACCTGAAGGAGCTA ]
[+] EMBL CD171247 [ AACTTGGAGCACTGGTCGCACAAGCTGAAATCGGTGATGCACCGTCAGAACACGTAGAAACACCAAATAGTGATGTTAATCACTGTACACCACCTCTATATGACTCACGGTTGGATAGTGTGGAGTCTACTGAATCTACAAATATGTCCAACAATAATGATTGTGACCAGTGTATACAAGGAGAGACATTAAATTATACTGCATGCTGTGAGATGCTGCGTAAACTGAAAATAATATTCAACCAAACGCCGGAGGTTGAAGCACANATAATGAAAGAATACCANAAGCTTCGTGGTCTTAAAGCGGTTGATGC ]
[+] EMBL CD127480 [ TCTCCGACGGGCATCACAGTTGCCGACTTATGGGATCGATCCTGTACCAGCTACGCCCATGCAAAAGGTTTATTTACCTGTTTCAACCTCAGCAACTGAAAACAATTCGCCGCCAAATGAAGTTAAAGCTACTAATGGAAAGCAAAACTCAGTCACATTGAGTCCTCAACCTGTAAATTTACCTGAAGGAGCTACTTTCTACTTGGGTATAACCAGTACAGGTGTAGTGACTTTTGTGGGGCGACAAAGAAATGCAGAATATACATGGGATCAAATTCATCGATTAGGCTGTGATGGAAAATTATTCCTAATTTACTTAAAAAGAGATCATAACCATACTGGACGAAAATTGTTCCGGACAAAATATATTCTGCATTCATTTCGGTGTAAATCTAAAACTGCAGCATTTGCTTTTTGGCATTGGGTTGTTGATACAAAATGCCTCTTCACTTTAAAACAAGCTAGTGAAGCAAAGAAAATCAACCCTACTACTAATATCTTCAGTCCAAGCCCGCCTTATTNATTTATTGGACGGGCACAACAAGAACTTCGAACCTCGCCCTGGATCTTTT]
[+] EMBL CD069549 [ ctccCAACCTCAGCAACTGAAAACAATTCGCCGCCAAATGAAGTTAAAGCTACTAATGGAAAGCAAAACTCAGTCACATTGAGTCCTCAACCTGTAAATTTACCTGAAGGAGCTACTTTCTACTTGGGTATAACCAGTACAGGTGTAGTGACTTTTGTGGGGCGACAAAGAAATGCAGAATATACATGGGATCAAATTCATCGATTAGGCTGTGATGGAAAATTATTCCTAATTTACTTAAAAAGAGATCATAACCATACTGGACGAAAATTGTTCCGGACAAAATATATTCTGCATTCATTTCGTTGTAAATCTAAAACTGCAGCATTTGCTTTTTGGCATTGGGTTGTTGATAGAAAATGCTTCTTCACTTTAAAACAAGCTAGTGAAGCAAAGAAAATCAAGCCTACTACTAATATC ]
consensusID : consensus_9579#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 766 fasta sequence
[ACTAAAGAGTCCTCAAAGAAACGGAGAACAGATGACCCCGAAAACAGGGACAGCGAAAAAGTTCCACATTCCAACTCCATAACTGATGACTCAATCCATTGTAAAGTCAGGTTACTTGATGATACCCAAACTCCTATTGAGTTTACAATAAAGAAAGCTGACAGTGGTTCGGTTCTTTTTAAAAAAGTGTGTCAGTCCATAGGCGACTTAGTTGAATACGACTATTTCGGGTTGAGATATACCGACCAAGATAATATACGGCAATGGCTAGAGTTAGATAAAAGTGTCTATAAACAGCTCAAAGACTGTAAGTCTTTCGTGGTAAACTTCCGTGTGAAACATTATCCACCGGATCCTGTCAATGATTTGGCGCAAAGTATTTCCAGGTACTTGGTATATCTTCAAATACGTCGGGATTTGACTCAGGGACGTCTTTTGTGTCCCCCATCTATCGTTGGAGAACTTGGAGCACTGGTCGCACAAGCTGAAATCGGTGATGCACCGTCAGAACACGTAGAAACACCAAATAGTGATGTTAATCACTGTACACCACCTCTATATAACTCACGGTTGGATAGTGTGGAGTCTACTGAATCTACAAATATGTCCAACAATAATGATTGTGACCAGTGTATACAAGGAGAGACATTAAATTATACTGCATGCTGTGAGATGCTGCGTAAACTGAAAATAATATTCAACCAAACGCCGGAGGTTGAAGCACANATAATGAAAGAATACCAAAAGCTTCGGTAATTTGCTTTTT]
[+] EMBL CD066355 [ACTAAAGAGTCCTCAAAGAAACGGAGAACAGATGACCCCGAAAACAGGGACAGCGAAAAAGTTCCACATTCCAACTCCATAACTGATGACTCAATCCATTGTAAAGTCAGGTTACTTGATGATACCCAAACTCCTATTGAGTTTACAATAAAGAAAGCTGACAGTGGTTCGGTTCTTTTTAAAAAAGTGTGTCAGTCCATAGGCGACTTAGTTGAATACGACTATTTCGGGTTGAGATATACCGACCAAGATAATATACGGCAATGGCTAGAGTTAGATAAAAGTGTCTATAAACAGCTCAAAGACTGTAAGTCTTTCGTGGTAAACTTCCGTGTGAAACATTATCCACCGGATCCTGTCAATGATTTGGCGCAAAGTATTTCCAGGTACTTGGTATATCTTCAAATACGTCGGG ]
[+] EMBL CD112701 [ GTTGAGATATACCGACAAAGATAATATACGGCAATGGCTAGAGTTAGATAAAAGTGTCTATAAACAGCTCAAAGACTGTAAGTCTTTCGTGGTAAACTTCCGTGCGAAACATTATCCACCGGATCCTGTCAATGATTTGGCGCAAAGTATTTCCAGGTACTTGGTATATCTTCAAATACGTCGGGATTTGACTCAGGGACGTCTTTTGTGTCCCCCATCTATCGTTGGAGAACTTGGAGCACTGGTCGCACAAGCTGAAATCGGTGATGCACCGTCAGAACACGTAGAAACACCAAATAGTGATGTTAATCACTGTACACCACCTCTATATAACTCACGGTTGGATAGTGTGGAGTCTACTGAATCTACAAATATGTCCAACAATAATGATTGTGACCAGTGTATACAAGGAGAGACATTAAAT ]
[+] EMBL CD171294 [ AACTTGGAGCACTGGTCGCACAAGCTGAAATCGGTGATGCACCGTCAGAACACGTAGAAACACCAAATAGTGATGTTAATCACTGTACACCACCTCTATATGACTCACGGTTGGATAGTGTGGAGTCTACTGAATCTACAAATATGTCCAACAATAATGATTGTGACCAGTGTATACAAGGAGAGACATTAAATTATACTGCATGCTGTGAGATGCTGCGTAAACTGAAAATAATATTCAACCAAACGCCGGAGGTTGAAGCACANATAATGAAAGAATACCAAAAGCTTCGGTAATTTGCTTTTT]
consensusID : consensus_9579#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 186 fasta sequence
[AGCATTTTCAGACATACCAATAAACAAAATATATTCTGCATTCATTTCGTTGTAAATCTAAAACTGCAGCATTTGCTTTTTGGCATTGGGTTGTTGATAGAAAATGCTTCTTCACTTTAAAACAAGCTAGTGAAGCAAAGAAAATCAAGCCTACTACTAATATCTTCAGTCGAAGCCACGCTTATC]
[-] EMBL CD199898 [AGCATTTTCAGACATACCAATAAACAAAATATATTCTGCATTCATTTCGTTGTAAATCTAAAACTGCAGCATTTGCTTTTTGGCATTGGGTTGTTGATAGAAAATGCTTCTTCACTTTAAAACAAGCTAGTGAAGCAAAGAAAATCAAGCCTACTACTAATATCTTCAGTCGAAGCCACGCTTATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9579#0 AATATACGGGTAGATTTTATTTCTTTCCAGTAAATCTTTTAGCAATGGCTAGAGTTAGAT 60
consensus_9579#2 ------------------------------------------------------------
consensus_9579#1 ------------------------------------------------------------
consensus_9579#0 AAAAGTGTCTATAAACAGCTCAAAGACTGTAAGTCTTTCGTGGTAAACTTCCGTGTGAAA 120
consensus_9579#2 ------------------------------------------------------------
consensus_9579#1 ------------------------------------------------------------
consensus_9579#0 CATTATCCACCGGATCCTGTCAATGATTTGGCGCAAAGTATTTCCAGGTACTTGGTATAT 180
consensus_9579#2 ------------------------------------------------------------
consensus_9579#1 ------------------------------------------------------------
consensus_9579#0 CTTCAAATACGTCGGGATTTGACTCAGGGACGTCTTTTGTGTCCCCCATCTATCGTTGGA 240
consensus_9579#2 ------------------------------------------------------------
consensus_9579#1 ------------------------------------------------------------
consensus_9579#0 GAACTTGGAGCACTGGTCGCACAAGCTGAAATCGGTGATGCACCGTCAGAACACGTAGAA 300
consensus_9579#2 ------------------------------------------------------------
consensus_9579#1 ------------------------------------------------------------
consensus_9579#0 ACACCAAATAGTGATGTTAATCACTGTACACCACCTCTATATGACTCACGGTTGGATAGT 360
consensus_9579#2 ------------------------------------------------------------
consensus_9579#1 ------------------------------------------------------------
consensus_9579#0 GTGGAGTCTACTGAATCTACAAATATGTCCAACAATAATGATTGTGACCAGTGTATACAA 420
consensus_9579#2 ------------------------------------------------------------
consensus_9579#1 ------------------------------------------------------------
consensus_9579#0 GGAGAGACATTAAATTATACTGCATGCTGTGAGATGCTGCGTAAACTGAAAATAATATTC 480
consensus_9579#2 ------------------------------------------------------------
consensus_9579#1 ------------------------------------------------------------
consensus_9579#0 AACCAAACGCCGGAGGTTGAAGCACAAATAATGAAAGAATACCAAAAGCTTCGTGGTCTT 540
consensus_9579#2 ------------------------------------------------------------
consensus_9579#1 ------------------------------------------------------------
consensus_9579#0 AAAGCGGTTGATGCGGAAACTGAACTTCTCCGACGGGCATCACAGTTGCCGACTTATGGG 600
consensus_9579#2 ------------------------------------------------------------
consensus_9579#1 ------------------------------------------------------------
consensus_9579#0 ATCGATCCTGTACCAGCTACGCCCATGCAAAAGGTTTATTTACCTGTTTCAACCTCAGCA 660
consensus_9579#2 ------------------------------------------------------------
consensus_9579#1 ------------------------------------------------------------
consensus_9579#0 ACTGAAAACAATTCGCCGCCAAATGAAGTTAAAGCTACTAATGGAAAGCAAAACTCAGTC 720
consensus_9579#2 ------------------------------------------------------------
consensus_9579#1 ------------------------------------------------------------
consensus_9579#0 ACATTGAGTCCTCAACCTGTAAATTTACCTGAAGGAGCTACTTTCTACTTGGGTATAACC 780
consensus_9579#2 ------------------------------------------------------------
consensus_9579#1 ------------------------------------------------------------
consensus_9579#0 AGTACAGGTGTAGTGACTTTTGTGGGGCGACAAAGAAATGCAGAATATACATGGGATCAA 840
consensus_9579#2 ------------------------------------------------------------
consensus_9579#1 ------------------------------------------------------------
consensus_9579#0 ATTCATCGATTAGGCTGTGATGGAAAATTATTCCTAATTTACTTAAAAAGAGATCATAAC 900
consensus_9579#2 ----------------------------------------------------------AG 2
consensus_9579#1 ----------------ACTAAAGAGTCCTCAAAGAAACGGAGAACAGATGACCCCGAAAA 44
*
consensus_9579#0 CATACTGGAC-GAAAATTGTTCCGGACAAAATATATT-CTGC--ATTCATTTCGGTGTAA 956
consensus_9579#2 CATTTT---C-AGACATACCAATAAACAAAATATATT-CTGC--ATTCATTTCGTTGTAA 55
consensus_9579#1 CAGGGACAGCGAAAAAGTTCCACATTCCAACTCCATAACTGATGACTCAATCCATTGTAA 104
** * * * * ** * ** *** * *** * * *****
consensus_9579#0 ATCTAAA--ACTGCAGCATTTGCTTTTTGGCATTGGGTTGTTGATACAAAATGCC----- 1009
consensus_9579#2 ATCTAAA--ACTGCAGCATTTGCTTTTTGGCATTGGGTTGTTGATAGAAAATGCT----- 108
consensus_9579#1 AGTCAGGTTACTTGATGATACCCAAACTCCTATTGAGTTTACAATAAAGAAAGCTGACAG 164
* * *** * ** * * **** *** *** * ** **
consensus_9579#0 ----TC--TTCACTTTAAAACAAGCTAGTGAAGCAAAGAAAATCAACCCTACTACTAATA 1063
consensus_9579#2 ----TC--TTCACTTTAAAACAAGCTAGTGAAGCAAAGAAAATCAAGCCTACTACTAATA 162
consensus_9579#1 TGGTTCGGTTCTTTTTAAAAAAGTGTGTCAGTCCATAGGCGACTTAGTTGAATACGACTA 224
** *** ******* * * ** ** * * * *** * **
consensus_9579#0 TCTTCAGTCCAAGCCCGCCTTATTNATTTATTGGACGGGCACAACAAGAACTTCGAACCT 1123
consensus_9579#2 TCTTCAGTCGAAGCCACGCTTATC------------------------------------ 186
consensus_9579#1 TTTCGGGTTGA-GATATACCGACCAAGATAATATACGGCAATGGCTAGAGTTAGATAAAA 283
* * ** * * * *
consensus_9579#0 CGCCCTGGATCTTTT--------------------------------------------- 1138
consensus_9579#2 ------------------------------------------------------------
consensus_9579#1 GTGTCTATAAACAGCTCAAAGACTGTAAGTCTTTCGTGGTAAACTTCCGTGTGAAACATT 343
consensus_9579#0 ------------------------------------------------------------
consensus_9579#2 ------------------------------------------------------------
consensus_9579#1 ATCCACCGGATCCTGTCAATGATTTGGCGCAAAGTATTTCCAGGTACTTGGTATATCTTC 403
consensus_9579#0 ------------------------------------------------------------
consensus_9579#2 ------------------------------------------------------------
consensus_9579#1 AAATACGTCGGGATTTGACTCAGGGACGTCTTTTGTGTCCCCCATCTATCGTTGGAGAAC 463
consensus_9579#0 ------------------------------------------------------------
consensus_9579#2 ------------------------------------------------------------
consensus_9579#1 TTGGAGCACTGGTCGCACAAGCTGAAATCGGTGATGCACCGTCAGAACACGTAGAAACAC 523
consensus_9579#0 ------------------------------------------------------------
consensus_9579#2 ------------------------------------------------------------
consensus_9579#1 CAAATAGTGATGTTAATCACTGTACACCACCTCTATATAACTCACGGTTGGATAGTGTGG 583
consensus_9579#0 ------------------------------------------------------------
consensus_9579#2 ------------------------------------------------------------
consensus_9579#1 AGTCTACTGAATCTACAAATATGTCCAACAATAATGATTGTGACCAGTGTATACAAGGAG 643
consensus_9579#0 ------------------------------------------------------------
consensus_9579#2 ------------------------------------------------------------
consensus_9579#1 AGACATTAAATTATACTGCATGCTGTGAGATGCTGCGTAAACTGAAAATAATATTCAACC 703
consensus_9579#0 ------------------------------------------------------------
consensus_9579#2 ------------------------------------------------------------
consensus_9579#1 AAACGCCGGAGGTTGAAGCACANATAATGAAAGAATACCAAAAGCTTCGGTAATTTGCTT 763
consensus_9579#0 ---
consensus_9579#2 ---
consensus_9579#1 TTT 766
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||