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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9584#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1134 fasta sequence
[AGGACACAAGAGAGGTATTTGAGTATTTCTCCACATTTTGACTGGTCGATTATATCGGAATCACCACAGCCCAATAGTCACACTTAAGTTTCAGTTTCAACATGTCTGGGCAGGGAGATCGTTTTAACATATTTCCATCTCGGATGGCACAAACAGCCATGAAAGGAAGACTTAAAGGTGCTCAGAAAGGCCATAGACTTCTAAAACGAAAGGCAGATGCTTTGACCGTTCGTTTCCGTGGAATACTGAAGCAAATAATACAGGCGAAACAGTCAATGGGCGAAGTTATGAAAGAGGCTAATTTCTCACTTGCTAGTGTTAAGTTCACAACAGCAGCAAACATTAACAGCCTAGTATTACAGAATGTAACTAAGGCTCAGAGGAAGGTCAAGACGGATAAAGAAAATGTTGCAGGTGTGCAGTTGCCCGTTTTCAAAGTCGTTGTGGAGGGATCTGATACATACGAATTGACAGGTTTAGCTGGTGGTGGTCAACAAATCGACCGACT-AAAAAAGAACTACAGCAAAGCTGTTGATTTATTAGTTGACTTAGCATCTCTTCAAACGTCTTTCATTACTCTAGACGATATTATAAAAGCAACTAATCGTCGAGTGAATGCCATTGAATTCGTTATCATACCGAAAATTGAACGTACACTAAACTATATCACACAGGAACTGG-ATGAACGCGAAAGAGAAGAATTCTACAGATTG-AAAAAAGTTCAAGAGAAGAAAAAACGTAATCGTTCCCTTAAAGAATTAGAATTGAAAT-CTAAAGGATTTGAACTAGCCTCAGCTGATCATGCTCCAAATATTCTAAAC-CAAGATGAAAATGAAGGACAAATTCTCTTTTAATTTATGTGAAATATTTTCGTTACATTATTGAAGCTGATGGGTTATATATATATATATTCAATCTGTCGATTCCGATTAATTATTGCATAATAATATGTATACTTTGAGAAGTAGCTAACTTCTCATCGTAT-GCATCTACATATGTTTTCTCTTGAATTAGTTACATTAACATATTACTTTATTGTTTAAAATTTTGATAATTCATGATGAATATAATTTGGTTTCTTTCAAGCAATAGTAATTTTTGA-GTGAACAGGGATGTAATCAAATAAACACCTAA]
[+] EMBL CD082345 [AGGACACAAGAGAGGTATTTGAGTATTTCTCCACATTTTGACTGGTCGATTATATCGGAATCACCACAGCCCAATAGTCACACTTAAGTTTCAGTTTCAACATGTCTGGGCAGGGAGATCGTTTTAACATATTTCCATCTCGGATGGCACAAACAGCCATGAAAGGAAGACTTAAAGGTGCTCAGAAAGGCCATAGACTTCTAAAACGAAAGGCAGATGCTTTGACCGTTCGTTTCCGTGGAATACTGAAGCAAATAATACAGGCGAAACAGTCAATGGGCGAAGTTATGAAAGAGGCTAATTTCTCACTTGCTAGTGTTAAGTTCACAACAGCAGCAAACATTAACAGCCTAGTATTACAGAATGTAACTAAGGCTCAGAGGAAGGTCAAGACGGATAAAGAAAATGTTGCAGGTGTGCAGTTGCCCGTTTTCAAAGTCGTTGTGGAGGGATCTGATACATACGAATTGACAGGTTTAGCTGGTGGTGGTCAACAAATCGACCGACT AAAAAAGAACTACAGCAAAGCTGTTGATTTATTAGTTGACTTAGCATCTCTTCAAACGTCTTTCATTACTCTAGACGATATTATAAAAGCAACTAATCGTCGAGTGAATGCCATTGAATTCGTTATCATACCGAANATTGAACGTACACTAAACTATATCACACAGGAACTGG A ]
[-] EMBL CD097340 [ TTTGACCGTTCGTTTCCGTGGAATACTGAAGCAAATAATACAGGCGAAACAGTCAATGGGCGAAGTTATGAAAGAGGCTAATTTCTCACTTGCTAGTGTTAAGTTCACAACAGCAGCAAACATTAACAGCCTAGTATTACAGAATGTAACTAAGGCTCAGAGGAAGGTCAAGACGGATAAAGAAAATGTTGCAGGTGTGCAGTTGCCCGTTTTCAAAGTCGTTGTGGAGGGATCTGATACATACGAATTGACAGGTTTAGCTGGTGGTGGTCAACAAATCGACCGACT AAAAAAGAACTACAGCAAAGCTGTTGATTTATTAGTTGACTTAGCATCTCTTCAAACGTCTTTCATTACTCTAGACGATATTATAAAAGCAACTAATCGTCGAGTGAATGCCATTGAATTCGTTATCATACCGAAAATTGAACGTACACTAAACTATATCACACAGGAACTGG ATGAACGCGAAAGAGAAGAATTCTACAGATTGAAAAAAAGTTCAAGAGAAGAAAAAACGTAATCGTTCCCTTAAAGAATTAGAATTGAAAT CTAAAG ]
[-] EMBL CD147632 [ TTAAGTTCACAACAGCAGCAAACATTAACAGCCTAGTATTACAGAATGTAACTAAGGCTCAGAGGAAGGTCAAGACGGATAAAGAAAATGTTGCAGGTGTGCAGTTGCCCGTTTTCAAAGTCGTTGTGGAGGGATCTGATACATACGAATTGACAGGTTTAGCTGGTGGTGGTCAACAAATCGACCGACT AAAAAAGAACTACAGCAAAGCTGTTGATTTATTAGTTGACTTAGCATCTCTTCAAACGTCTTTCATTACTCTAGACGATATTATAAAAGCAACTAATCGTCGAGTGAATGCCATCCCCCTCGTTATCATACCGAAAATTGAACGTACACTAAACTATATCACACAGGAACTGG ATGAACGCGAAAGAGAAGAATTCTACAGATTG AAAAAAGTTCAAGAGAAGAAAAAACGTAACCGTTCCCTTAAAGAATTAGAATTGAAATCCTAAAG ]
[-] EMBL CD147641 [ GGAAGGTCAAGACGGATAAAGAAAATGTTGCAGGTGTGCAGTTGCCCGTTTTCAAAGTCGTTGTGGAGGGATCTGATACATACGAATTGACAGGTTTAGCTGGTGGTGGTCAACAAATCGACCGACTAAAAAAAGAACTACAGCAAAGCTGTTGATTTATTAGTTGACTTAGCATCTCTTCAAACGTCTTTCATTACTCTAGACGATATTATAAAAGCAACTAATCGTCGAGTGAATGCCATTGAATTCGTTATCATACCGAAAATTGAACGTACACTAAACTATATCACACAGGAACTGG ATGAACGCGAAAGAGAAGAATTCTACAGATTG AAAAAAGTTCAAGAGAAGAAAAAACGTAATCGTTCCCTTAAAGAATTAGAATTGAAAT CTAAAG ]
[-] EMBL CD075945 [ ACTCTAGACGATATTATAAAAGCAACTAATCGTCGAGTGAATGCCATTGAATTCGTTATCATACCGAAAATTGAACGTACACTAAACTATATCACACAGGAACTGG ATGAACGCGAAAGAGAAGAATTCTACAGATTG AAAAAAGTTCAAGAGAAGAAAAAACGTAATCGTTCCCTTAAAGAATTAGAATTGAAAT CTAAAGGATTTGAACTAGCCTCAGCTGATCATGCTCCAAATATTCTAAAC CAAGATGAAAATGAAGGACAAATTCTCTTTTAATTTATGTGAAATATTTTCGTTACATTATTGAAGCTGATGGGTTATATATATATATATTCAATCTGTCGATTCCGATTAATTATTGCATAATAATATGTATACTTTGAGAAGTAGCTAACTTCTCATCGTAT GCATCTACATATGTTTTCTCTTGAATTAGTTACATTAACATATTACTTTATTGTTTAAAATTTTGATAATTCATGATGAATATAATTTGGTTTCTTTCAAGCAATAGTAATTTTTGA GTGAACAGGGATGTAATCAAATAAACACCTAA]
[+] EMBL BE431223 [ AGGAACTGGAATGAACGCGAAAGAGAAGAATTCTACAGATTG AAAAAAGTTCAAGAGAAGAAAAAACGTAATCGTTCCCTTAAAGAATTAGAATTGAAAT CTAAAGGATTTGAACTAGCCTCAGCTGATCATGCTCCAAATATTCTAAAC CAAGATGAAAATGAAGGACAAATTCTCTTTTAATTTATGTGAAATATTTTCGTTACATTATTGAAGCTGATGGGTTATATATATATATATTCAATCTGTCGATTCCGATTAATTATTGCATAATAATATGTATACTTTGAGAAGTAGCTAACTTCTCATCGTATGGCATCTACATATGTTTTCTCTTGAA TAGTTACATTAACATATTACTTTATTGTTTAAAATTTTGATAATTCATGATG ATATAATTTGGGTTCTTTCAAGAAATAGTAATTTTTGAGGTGAACAGGG TGT ATC AATAAACcc ]
[+] EMBL CD146348 [ ACTGG ATGAACGCGAAAGAGAAGAATTCTACAGATTG AAAAAAGTTCAAGAGAAGAAAAAACGTAATCGTTCCCTTAAAGAATTAGAATTGAAAT CTAAAGGATTTGAACTAGCCTCAGCTGATCATGCTCCAAATATTCTAAAC CAAGATGAAAATGAAGGACAAATTCTCTTTTAATTTATGTGAAATATTT ]
[+] EMBL SM004 [ CAAGAGAAG AAAAACGTAATCGTTCCCTTAAAGAATTAGAATTGAAAT CTAAAGGATTTGAACTAGCCTCAGCTGATCATGCTCCAAATATTCTAAACGCAAGATGAAAATGAAGGACAAATTCTCTTTTAATTTATGTGAAATATTTTCGTTACATTATTGAAGCTGATGGGTTATATATATATATATc ]
consensusID : consensus_9584#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 267 fasta sequence
[TAAAACGAAAGGCAGATGCTTTGACCGTTCGTTTCCGTGGAATACTGAAGCAAATAATACAGGCGAAACAGTCAATGGGCGAAGTTATGAAAGAGGCTAATTTCTTACTTGCTAGTGTTAAGTTCACAACAGCAGCAAACATTAACAGCCTAGTATTACAGAATGTAACTAAGGCTCAGAGGAAGGTCAAGACGGATAAAGAAAATGTTGCAGGTTGGAACATTAAAAATTACTTTACTTTCCAGGTGTGCAGTTGCCCGTTTTCAA]
[+] EMBL CD111973 [TAAAACGAAAGGCAGATGCTTTGACCGTTCGTTTCCGTGGAATACTGAAGCAAATAATACAGGCGAAACAGTCAATGGGCGAAGTTATGAAAGAGGCTAATTTCTTACTTGCTAGTGTTAAGTTCACAACAGCAGCAAACATTAACAGCCTAGTATTACAGAATGTAACTAAGGCTCAGAGGAAGGTCAAGACGGATAAAGAAAATGTTGCAGGTTGGAACATTAAAAATTACTTTACTTTCCAGGTGTGCAGTTGCCCGTTTTCAA]
consensusID : consensus_9584#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 123 fasta sequence
[AGTTATGAAAGAGGCTAATTTCTCACTTGCTAGTGTTAAGTTCACAACAGCAGCAAACATTAACAGCCTAGTATTACAGAATGTAACTAAGGCTCAGAGGAAGGTCAAGACGGTCGATGCTAT]
[-] EMBL CD202063 [AGTTATGAAAGAGGCTAATTTCTCACTTGCTAGTGTTAAGTTCACAACAGCAGCAAACATTAACAGCCTAGTATTACAGAATGTAACTAAGGCTCAGAGGAAGGTCAAGACGGTCGATGCTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9584#0 AGGACACAAGAGAGGTATTTGAGTATTTCTCCACATTTTGACTGGTCGATTATATCGGAA 60
consensus_9584#2 ------------------------------------------------------------
consensus_9584#1 ------------------------------------------------------------
consensus_9584#0 TCACCACAGCCCAATAGTCACACTTAAGTTTCAGTTTCAACATGTCTGGGCAGGGAGATC 120
consensus_9584#2 ------------------------------------------------------------
consensus_9584#1 ------------------------------------------------------------
consensus_9584#0 GTTTTAACATATTTCCATCTCGGATGGCACAAACAGCCATGAAAGGAAGACTTAAAGGTG 180
consensus_9584#2 ------------------------------------------------------------
consensus_9584#1 ------------------------------------------------------------
consensus_9584#0 CTCAGAAAGGCCATAGACTTCTAAAACGAAAGGCAGATGCTTTGACCGTTCGTTTCCGTG 240
consensus_9584#2 ------------------------------------------------------------
consensus_9584#1 ---------------------TAAAACGAAAGGCAGATGCTTTGACCGTTCGTTTCCGTG 39
consensus_9584#0 GAATACTGAAGCAAATAATACAGGCGAAACAGTCAATGGGCGAAGTTATGAAAGAGGCTA 300
consensus_9584#2 -------------------------------------------AGTTATGAAAGAGGCTA 17
consensus_9584#1 GAATACTGAAGCAAATAATACAGGCGAAACAGTCAATGGGCGAAGTTATGAAAGAGGCTA 99
*****************
consensus_9584#0 ATTTCTCACTTGCTAGTGTTAAGTTCACAACAGCAGCAAACATTAACAGCCTAGTATTAC 360
consensus_9584#2 ATTTCTCACTTGCTAGTGTTAAGTTCACAACAGCAGCAAACATTAACAGCCTAGTATTAC 77
consensus_9584#1 ATTTCTTACTTGCTAGTGTTAAGTTCACAACAGCAGCAAACATTAACAGCCTAGTATTAC 159
****** *****************************************************
consensus_9584#0 AGAATGTAACTAAGGCTCAGAGGAAGGTCAAGACGGATAAAGAAAATGTTGCAGGTGTGC 420
consensus_9584#2 AGAATGTAACTAAGGCTCAGAGGAAGGTCAAGACGGTCGATGCTAT-------------- 123
consensus_9584#1 AGAATGTAACTAAGGCTCAGAGGAAGGTCAAGACGGATAAAGAAAATGTTGCAGGTTGGA 219
************************************ * * *
consensus_9584#0 AGTTGCCCGTTTTCAAAGTCGTTGTGGAGGGATCTGATACATACGAATTGACAGGTTTAG 480
consensus_9584#2 ------------------------------------------------------------
consensus_9584#1 A--------CATTAAAAATTACTTTACT----TTCCAGGTGTGC-AGTTGCCCGTTTTCA 266
consensus_9584#0 CTGGTGGTGGTCAACAAATCGACCGACTAAAAAAGAACTACAGCAAAGCTGTTGATTTAT 540
consensus_9584#2 ------------------------------------------------------------
consensus_9584#1 A----------------------------------------------------------- 267
consensus_9584#0 TAGTTGACTTAGCATCTCTTCAAACGTCTTTCATTACTCTAGACGATATTATAAAAGCAA 600
consensus_9584#2 ------------------------------------------------------------
consensus_9584#1 ------------------------------------------------------------
consensus_9584#0 CTAATCGTCGAGTGAATGCCATTGAATTCGTTATCATACCGAAAATTGAACGTACACTAA 660
consensus_9584#2 ------------------------------------------------------------
consensus_9584#1 ------------------------------------------------------------
consensus_9584#0 ACTATATCACACAGGAACTGGATGAACGCGAAAGAGAAGAATTCTACAGATTGAAAAAAG 720
consensus_9584#2 ------------------------------------------------------------
consensus_9584#1 ------------------------------------------------------------
consensus_9584#0 TTCAAGAGAAGAAAAAACGTAATCGTTCCCTTAAAGAATTAGAATTGAAATCTAAAGGAT 780
consensus_9584#2 ------------------------------------------------------------
consensus_9584#1 ------------------------------------------------------------
consensus_9584#0 TTGAACTAGCCTCAGCTGATCATGCTCCAAATATTCTAAACCAAGATGAAAATGAAGGAC 840
consensus_9584#2 ------------------------------------------------------------
consensus_9584#1 ------------------------------------------------------------
consensus_9584#0 AAATTCTCTTTTAATTTATGTGAAATATTTTCGTTACATTATTGAAGCTGATGGGTTATA 900
consensus_9584#2 ------------------------------------------------------------
consensus_9584#1 ------------------------------------------------------------
consensus_9584#0 TATATATATATTCAATCTGTCGATTCCGATTAATTATTGCATAATAATATGTATACTTTG 960
consensus_9584#2 ------------------------------------------------------------
consensus_9584#1 ------------------------------------------------------------
consensus_9584#0 AGAAGTAGCTAACTTCTCATCGTATGCATCTACATATGTTTTCTCTTGAATTAGTTACAT 1020
consensus_9584#2 ------------------------------------------------------------
consensus_9584#1 ------------------------------------------------------------
consensus_9584#0 TAACATATTACTTTATTGTTTAAAATTTTGATAATTCATGATGAATATAATTTGGTTTCT 1080
consensus_9584#2 ------------------------------------------------------------
consensus_9584#1 ------------------------------------------------------------
consensus_9584#0 TTCAAGCAATAGTAATTTTTGAGTGAACAGGGATGTAATCAAATAAACACCTAA 1134
consensus_9584#2 ------------------------------------------------------
consensus_9584#1 ------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||