|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9594#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 670 fasta sequence
[GGCGGTAACACAGGGTCCGATGTTGTACTTGGTGGACTTGTAGGACAAGAAAGAACACTATTATTAGTGATATTATTTGAAGCACAATTCGCGGATGAAAACGACGATGACATTGAAGTAATTTGACTACTTTGATTATTGCTATTTATTGTTGTAGTCTGGTTTGGTATCGACCAGTACTCTATTTGAATATCCCAAAGGCGTTGATCGGAACCGAATACTGGTGACTGACCGCTTCTTTGAGCAGAAGAATGTGATCTTGGTGCTATGATTGTATTATGTGAAGCTGATTCAGGACTAATATTACGTTTAGTATAAGATTGTTCTGGATCACTAGGTGTTTTAAAATCTAAGTCAGTGGTACTTGTATTAGCTACCACTGTATATGTATTAAATGAATGAGATGAATCGGCAGTAAATGATCGACTAGTCTGTTGTTGGTGTTGAGATTTAATTTGTGTTGGAACAGTTGTCAATAAGCCAGGATAAGTTAATGTTGAACAATTGCCAAGGCGAACATTTAAAATGAATGGAATAACCATTTCTTCATTCTGAATATTATTATTACCTGAACAACTAATCCCATCTGAATAACTAGCATTCTGGTCTGTCATTCCTTGAACTGACTGATTTGCGTTATTTATCATTGGTTGTCGATAATAGAGAAACC]
[+] EMBL CD132925 [GGCGGTAACACAGGGTCCGATGTTGTACTTGGTGGACTTGTAGGACAAGAAAGAACACTATTATTAGTGATATTATTTGAAGCACAATTCGCGGATGAAAACGACGATGACATTGAAGTAATTTGACTACTTTGATTATTGCTATTTATTGTTGTAGTCTGGTTTGGTATCGACCAGTACTCTATTTGAATATCCCAAAGGCGTTGATCGGAACCGAATACTGGTGACTGACCGCTTCTTTGAGCAGAAGAATGTGATCTTGGTGCTATGATTGTATTATGTGAAGCTGATTCAGGACTAATATTACGTTTAGTATAAGATTGTTCTGGATCACTAGGTGTTTTAAAATCTAAGTCAGTGGTACTTGTATTAGCTACCACTGTATATGTATTAAATGAATGAGATGAATCGGCAGTAAATGATCGACTAGTCTGTTGTTGGTGTTGAGATTTAATTTGTGTTGGAACAGT ]
[+] EMBL CD117623 [ TCAGGACTAATATTACGTTTAGTATAAGATTGTTCTGGATCACTAGGTGTTTTAAAATCTAAGTCAGTGGTACTTGTATTAGCTACCACTGTATATGTATTAAATGAATGAGATGAATCGGCAGTAAATGATCGACTAGTCTGTTGTTGGTGTTGAGATTTAATTTGTGTTGGAACAGTTGTCAATAAGCCAGGATAAGTTAATGTTGAACAATTGCCAAGGCGAACATTTAAAATGAATGGAATAACCATTTCTTCATTCTGAATATTATTATTACCTGAACAACTAATCCCATCTGAATAACTAGCATTCTGGTCTGTCATT ]
[+] EMBL CD117751 [ TCAGGACTAATATTACGTTTAGTATAAGATTGTTCTGGATCACTAGGTGTTTTAAAATCTAAGTCAGTGGTACTTGTATTAGCTACCACTGTATATGTATTAAATGAATGAGATGAATCGGCAGTAAATGATCGACTAGTCTGTTGTTGGTGTTGAGATTTAATTTGTGTTGGAACAGTTGTCAATAAGCCAGGATAAGTTAATGTTGAACAATTGCCAAGGCGAACATTTAAAATGAATGGAATAACCATTTCTTCATTCTGAATATTATTATTACCTGAACAACTAATCCCATCTGAATAACTAGCATTCTGGTCTGTCATT ]
[-] EMBL CD059386 [ GTCTGTTGTTGGTGTTGAGATTTAATTTGTGTTGGAACAGTTGTCAATAAGCCAGGATAAGTTAATGTTGAACAATTGCCAAGGCGAACATTTAAAATGAATGGAATATCCATTTCTTCATTCTGAATATTATTAGTACCTGAACAACTAATCCCATCTGAATAACTAGCATTCTGGTCTGTCATTCCTTGAACTGACTGATTTGCGTTATTTATCATTGGTTGTCGATAATAGAGAAACC]
[+] EMBL CD059243 [ GTTGGTGTTGAGATTAAATTTGTGTTGGAACAGTTGTCAATAAGCCAGGATAAGTTAATGTTGAACAATTGCCAAGGCGAACATTTAAAATGAATGGAATAACCATTTCTTCATTCTGAATATTATTATTACCTGAACAACTAATCCCATCTGAATAACTAGCATTCTGGTCTGTCATTCCTTGAACTGACTGATTTGCGTTATT ]
[-] EMBL CD059194 [ TTGGTGTTGAGATTTAATTTGTGTTGGAACAGTTGTCAATAAGCCAGGATAAGTTAATGTTGAACAATTGCCAAGGCGAACATTTAAAATGAATGGAATAACCATTTCTTCATTCTGAATATTATTATTACCTGAACAACTAATCCCATCTGAATAACTAGCATCCTGGTCTGTCATTCCTTGAACTGACTGATTTGCGTTATTT ]
[-] EMBL CD158820 [ TGGTGTTGAGATTTAATTTGTGTTGGAACAGTTGTCAATAAGCCAGGATAAGTTAATGTTGAACAATTGCCAAGGCGAACATTTAAAATGAATGGAATAACCATTTCTTCATTCTGAATATTATTATTACCTGAACAACTAATCCCATCTGAATAACTAGCATTCTGGTCTGTCATTCCTTGAACTGACCGATTTGCGTTATTT ]
consensusID : consensus_9594#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence
[ATATTACGTTTAGTATAAGATGTTTCTGGATCACTAGGTGTTTTAAAATCTAAGTCAGTGGTACTTGTATTAGCTACCACTGTATATGTATTAAATGAATGAGATGAATCGGCAGTAAATGATCGACTAGTCTGTTGTTGGTGTTGAGGTTTAATTTGTGTTGGAACAGTCGTCAATAAGCCAGGATAAGTTAATGTTGAACAATTGCCAAGGCGAACATTTAAAATGAATGGAATAACCATTTCTTCATTCTGAATATTATTATTACAATTGGTTGGGGTTTTCTCATGAATTTGTTTTTCGTCATAAGTAATATTTCCATCGCAAATTAATCTATCGCCTAAAATA]
[-] EMBL CD181603 [ATATTACGTTTAGTATAAGATGTTTCTGGATCACTAGGTGTTTTAAAATCTAAGTCAGTGGTACTTGTATTAGCTACCACTGTATATGTATTAAATGAATGAGATGAATCGGCAGTAAATGATCGACTAGTCTGTTGTTGGTGTTGAGGTTTAATTTGTGTTGGAACAGTCGTCAATAAGCCAGGATAAGTTAATGTTGAACAATTGCCAAGGCGAACATTTAAAATGAATGGAATAACCATTTCTTCATTCTGAATATTATTATTACAATTGGTTGGGGTTTTCTCATGAATTTGTTTTTCGTCATAAGTAATATTTCCATCGCAAATTAATCTATCGCCTAAAATA]
consensusID : consensus_9594#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 283 fasta sequence
[GATGACATTGAAGTAATTTGACTACTTTGATTATTGCTATTTATTGTTGTAGTCTGGTTTGGTATCGACCAGTACTCTATTTGAATATCCCAAAGGCGTTGATCGGAACCGAATACTGGTGACTGACCGCTTCTTTGAGCAGAAGAATGTGATCCGGGTAGCATATCAGATAAAAGTGTAGTAGCAATGTTACTACTACTAGCACTACTCCTGTTGTTATTAGTTCTAAAAGATCCATTTCCCCACGAAGATTTTCTTTTAAGTAATGTTTTATGTGAACGAA]
[+] EMBL CD158514 [GATGACATTGAAGTAATTTGACTACTTTGATTATTGCTATTTATTGTTGTAGTCTGGTTTGGTATCGACCAGTACTCTATTTGAATATCCCAAAGGCGTTGATCGGAACCGAATACTGGTGACTGACCGCTTCTTTGAGCAGAAGAATGTGATCCGGGTAGCATATCAGATAAAAGTGTAGTAGCAATGTTACTACTACTAGCACTACTCCTGTTGTTATTAGTTCTAAAAGATCCATTTCCCCACGAAGATTTTCTTTTAAGTA ]
[-] EMBL CD158496 [ ATGACGTTGAAGTAATTTGACTACTTTGATTATTGCTATTTATTGTTGTAGTCTGGTTTGGTATCGACCAGTACTCTATTTGAATATCCCAAAGGCGTTGATCGGAACCGAATACTGGTGACTGACCGCTTCTTTGAGCAGAAGAATGTGATCCGGGTAGCATATCAGATAAAAGTGTAGTAGCAATGTTACTACTACTAGCACTACTCCTGTTGTTATTAGTTCTAAAAGATCCATTTCCCCACGAAGATTTTCTTTTAAGTAATGTTTTATGTGAACGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9594#0 GGCGGTAACACAGGGTCCGATGTTGTACTTGGTGGACTTGTAGGACAAGAAAGAACACTA 60
consensus_9594#1 ------------------------------------------------------------
consensus_9594#2 ------------------------------------------------------------
consensus_9594#0 TTATTAGTGATATTATTTGAAGCACAATTCGCGGATGAAAACGACGATGACATTGAAGTA 120
consensus_9594#1 ------------------------------------------------------------
consensus_9594#2 ------------------------------------------------------------
consensus_9594#0 ATTTGACTACTTTGATTATTGCTATTTATTGTTGTAGTCTGGTTTGGTATCGACCAGTAC 180
consensus_9594#1 ------------------------------------------------------------
consensus_9594#2 ------------------------------------------------------------
consensus_9594#0 TCTATTTGAATATCCCAAAGGCGTTGATCGGAACCGAATACTGGTGACTGACCGCTTCTT 240
consensus_9594#1 ------------------------------------------------------------
consensus_9594#2 ------------------------------------------------------------
consensus_9594#0 TGAGCAGAAGAATGTGATCTTGGTGCTATGATTGTATTATGTGAAGCTGATTCAGGACTA 300
consensus_9594#1 ------------------------------------------------------------
consensus_9594#2 ------------------------------------------------------------
consensus_9594#0 ATATTACGTTTAGTATAAGATTGTTCTGGATCACTAGGTGTTTTAAAATCTAAGTCAGTG 360
consensus_9594#1 ATATTACGTTTAGTATAAGATGTTTCTGGATCACTAGGTGTTTTAAAATCTAAGTCAGTG 60
consensus_9594#2 -----------------------------------------GATGACATTGAAGTAATT- 18
* * ** **** * *
consensus_9594#0 GTACTTGTATTAGCTACCACTGTATATGTATTAAAT---GAATGAGATGAATCGGCAGTA 417
consensus_9594#1 GTACTTGTATTAGCTACCACTGTATATGTATTAAAT---GAATGAGATGAATCGGCAGTA 117
consensus_9594#2 -TGACTACTTTGATTATTGCTATTTATTGTTGTAGTCTGGTTTGGTATCGACCAGTACTC 77
* * ** ** ** * *** * * * * ** ** * * * * *
consensus_9594#0 AATGATCGACTAGTCTGTTGTTGGTGTTGAGATTTAATTTGTGTTGGAACAGTTGTCAAT 477
consensus_9594#1 AATGATCGACTAGTCTGTTGTTGGTGTTGAGGTTTAATTTGTGTTGGAACAGTCGTCAAT 177
consensus_9594#2 TAT--TTGAATATCCCAAAGGCGTTGATCGGAACCGAATACTGGTGACTGACCGCTTCTT 135
** * ** ** * * * ** * * * * ** ** * * *
consensus_9594#0 AAGCCAGGATAAGTTAATGTTGAACAATTGCCAAGGCGAACATTTAAAATGAATGGAATA 537
consensus_9594#1 AAGCCAGGATAAGTTAATGTTGAACAATTGCCAAGGCGAACATTTAAAATGAATGGAATA 237
consensus_9594#2 TGAGCAGAAGAATGTGAT-CCGGGTAGCATATCAGATAAAAGTGTAGTAGCAATGTTACT 194
*** * ** * ** * * ** ** * ** * **** *
consensus_9594#0 ACCATTT-CTTCATTCTGAATATTATTATTACCTGAACAACTAATCCCATCTGAATAACT 596
consensus_9594#1 ACCATTT-CTTCATTCTGAATATTATTATTAC--AATTGGTTGGGGTTTTCTCATGAATT 294
consensus_9594#2 ACTACTAGCACTACTCCTGTTGTTATTAGTTC-TAAAAGATCCA--TTTCCCCACGAAGA 251
** * * * * ** * ****** * * * * * **
consensus_9594#0 AGCATTCTGGTCTGTCATTCCTTGAACTGACTGATTTGCGTTATTTATCA-TTGGTTGTC 655
consensus_9594#1 TGTTT-----TTCGTCAT------AAGTAAT--ATTTCCATCGCAAATTAATCTATCGCC 341
consensus_9594#2 TTTTC---------TTTT------AAGTAAT---GTTTTAT-GTGAACGAA--------- 283
* * ** * * ** * * *
consensus_9594#0 GATAATAGAGAAACC 670
consensus_9594#1 TAAAATA-------- 348
consensus_9594#2 ---------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||