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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9597#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1438 fasta sequence
[TTTTACTCTTGTGATTTGTTGCATGTTTTAGGATATTTCAAACATGTCTAGTCGTGAGGCTCCAGCATCTATTTCAGCCATTCGTAATCCAA-A-CAGTCAGCTTGCTGGTCTACCACCTAGACCTCCTCTTTCAGATGCGGCTTTGTTTTCTTTGATTTTAACTGTTCGGGAGGCCGGTCGGCGTTTAGCAATGAGTGATTACGCCATCGCCACAGCTTGCACAATATTACACCGAGCTCTACGCGTTCTTACTACTGGTGATGAACAGCCAGTTACAACCCTCGCTACTTCTGGGTCAGCAACTGTCAATGGATCTGATTCAGTTTCCGGTTTCGACTCAATCGACCAATCTTTTAAACATAGCTTAGGAGATATCGATGCACATACGATCGCTATGGCATCTGTCAGTCTTGG-CGGTA-A-AGTACAAGAAGAACATCAACGGCTGCGTGATGTGATTGTTTCTTATTACAGGACACTTCACAAAAACCGTCGTAGTCCTCTGGAAGTCGGTGATGATTATGATCGCTTACGTGAAAGTCTTGTACAAACGGAATTATTTTTGATGCGATTGTTAGCTTATCACGTTCGTCGTCCTTCTCTACCACATCCATATCTAGTTCATTATCTTCATTCTTTACTCCATTGGGTTGGTAAAGGTATAGCACAACCATGCGGGTCCGATTTGAACGCTGGTGGAAATTCAGTAAATGCTTCTGCAATTGCATTAGCACGACTTCCCGGTTTGGCTTGGTCAATACTGGCGGATTCTTATCAGTCAGCTATGTGTTTAGATTTTGCCCCAGAGCATATCGCTGCAGCTGTACTGCATTTAGCTTTACGGATTGCTGGTGTTGAAATACCTGGTAATCGACACTCTGAAATGGCCTGGTGGCAGGCTATTTCAGATAGTTTGTCCCGTGAAATAGTTGAACAAATCCAACTTCGAGTAATGGATATTTATGCAGTGGATGATAAATTCAAAGCCAGTACACTTAATCGTTTCACTGATGAATTTTGAGTACAGTTTGTTGGCGAACAGCTTTGCATTTTTTATACTGTTTTGTCATGTACATTCGAAATGTATTGTAAAGAAAATTTAATATTCAAATTTGTTAACACTCGAGTTGTTTTGCATTGTTTCTTTCCACATTTTCCGTTTTTCATTTGACGATTTAGAATGATTTTTCGTGATTTTAAACATTGATTAATCAATAGTTTACTACTGTTTCCAAAATCCCATTCCTACTACAGACACTCGATCCTTTGAATATCCCAAAGTATCAATCATGTAGTTCAATGAGATGCATATACATACGTATATTTGTTACGGTGTTTTTGTATTCCTGCTTTTTACAAACGTCATATAGTTTCTTGTTGTGTTCATTTTCCAAGAACTACTTTTTGATGTATCCACTGGCGGATGTAAATAAATTAGTTG]
[+] EMBL CD138288 [TTTTACTCTTGTGATTTGTTGCATGTTTTAGGATATTTCAAACATGTCTAGTCGTGAGGCTCCAGCATCTATTTCAGCCATTCGTAATCCAA A CAGTCAGCTTGCTGGTCTACCACCTAGACCTCCTCTTTCAGATGCGGCTTTGTTTTCTTTGATTTTAACTGTTCGGGAGGACGGTCGGCGTTTAGCAATGAGTGATTACGCCATCGCCACAGCTTGCACAAGAGTAat ]
[+] EMBL CD196296 [ ATGTTTTAGGATATTTCAAACATGTCTAGTCGTGAGGCTCCAGCATCTATTTCAGCCATTCGTAATCCAA A CAGTCAGCTTGCTGGTCTACCACCTAGACCTCCTCTTTCAGATGCGGCTTTGTTTTCTTTGATTTTAACTGTTCGGGAGGCCGGTCGGCGTTTAGCAATGAGTGATTACGCCATCG ]
[+] EMBL CD082213 [ acgaggcGATATTTCAAACATGTCTAGTCGTGAGGCTCCTGCATCTATTTCAGCCACTCGTAATCCAA A CAGTCAGCTTGCTGGTCTACCACCTAGACCTCCTCTTTCAGATGCGGCTTTGTTTTCTTTGATTTTAACTGTTCGGGAGGCCGGTCGGCGTTTAGCAATGAGTGATTACGCCATCGCCACAGCTTGCACAATATTACACCGAGCTCTACGCGTTCTTACTACTGGTGATGAACAGCCAGTTACAACCCTCGCTACTTCTGGGTCAGCAACTGTCAATGGATCTGATTCAGTTTCCGGTTTCGACTCAATCGACCAATCTTTTAAACATAGCTTAGGAGATATCGATGCACATACGATCGCTATGGCATCTATCAGTCTTGG CGGTA A AGTACAAGAAGAACATCAACGGCTGCGTGATGTGATTGTTTCTTATTACAGGACACTTCACAAAAACCGTCGTAGTCCTCTGGAAGTCGGTGATGATTATGATCGCTTACGTGAAAGTCTTGTACAAACGGAATTATTTTTGATGCGATTGTTAGCTTATCACGTTCGTCGTCCTTCTCTACCACATCCATATCTAGTTCATTATCTTCATTCTTTACTCCATTGGGTTGGTAAAGGTATAGCACAACCATGCGGGTCCGATTTGAACGCTGGT ]
[+] EMBL CD150609 [ TCCAAGATCAGACAGCTTGCTGGTCTACCACCTAGACCTCCTCTTTCAGATGCGGCTTTGTTTTCTTTGATTTTAACTGTTCGGGAGGCCGGTCGGCGTTTAGCAATGAGTGATTACGCCATCGCCACAGCTTGCACAATATTACACCGAGCTCTACGCGTTCTTACTACTGGTGATGAACAGCCAGTTACAACCCTCGCTACTTCTGGGTCAGCAACTGTCAATGGATCTGATTCAGTTTCCGGTTTCGACTCAATCGACCAATCTTTTAAACATAGCTTAGGAGATATCGATGCACATACGATCGCTATGGCATCT ]
[+] EMBL CD113889 [ TGTTGGTCTACCA CTAGACCTCCTCTTTCAGATGCTGCTTTGTTTTCTTTGATTTTAACTGTTCGGGAGGCCGGTCGGCGTTTAGCAATGAGTGATTACGCCATCGCCACAGCTTGCACAATATTACACCGAGCTCTACGCGTTCTTACTACTGGTGATGAACAGCCAGTTACAACCCTCGCTACTTCTGGGTCAGCAACTGTCAATGGATCTGATTCAGTTTCCGGTTTCGACTCAATCGACCAATCTTTTAAACATAGCTTAGGAGATATCGATGCACATACGATCGCTATGGCATCTGTCAGTCTTGG CGGTA A AGTACAAGAAGAACATCAACGGCTGCGTGATGTGATTGTTTCTTATTACAGGACACTTCACAAAAACCGTCGTAGTCCTCTGGAAGTCGGTGATGATTATGATCGCTTACG ]
[+] EMBL CD113801 [ gTATAACACCGAGCTCTACGCGTTCTTACTACTGGTGATGAACAGCCAGTTACAACCCTCGCTACTTCTGGGTCAGCAACTGTCAATGGATCTGATTCAGTTTCCGGTTTCGACTCAATCGACCAATCTTTTAAACATAGCTTAGGAGATATCGATGCACATACGATCGCTATGGCATCTGTCAGTCTTGGCCGGTACACAGTACAAGAAGAACATCAACGGCTGCGTGATGTGATTGTTTCTTATTACAGGACACTTCACAAAAACCGTCGTAGTCCTCTGGAAGTCGGTGATGATTATGATCGCTTACGTGAAAG ]
[+] EMBL CD113906 [ CACCGAGCTCTAAGCGTACTTACTACTGGTGATGAACAGCCAGTTACAACCCTCGCTACTTCTGGGTCAGCAACTGTCCATGGATCTGATTCAGTTTCCGGTTTCGACTCAATCGACCAATCTTTTAAACATAGCTTAGGAGATATCGATGCACATACGATCGCTATGGCATCTGTCAGTCTTGG CGGTA C AGTACAAGACGA ]
[-] EMBL CD186526 [ TGATGCGATTGTTAGCTTATCACGTTCGTCGTCCTTCTCTACCACATCCATATCTAGTTCATTATCTTCATTCTTTACTCCATTGGGTTGGTAAAGGTATAGCACAACCATGCGGGTCCGATTTGAACGCTGGTGGAAATTCAGTAAATGCTTCTGCAATTGCATTAGCACGACTTCCCGGTTTGGCTTGGTCAATACTGGCGGATTCTTATCAGTCAGCTATGTGTTTAGATTTTGCCCCAGAGCATATCGCTGCAGCTGTACTGCATTTAGCTTTACGGATTGCTGGTGTTGAAATACCTGGTAATCGACACTCTGAAATGGCCTGGTGGCAGGCTATTTCAGATAGTTTGTCCCGTGAAATAGTTGAACAAATCCAACTTCGAGTAATGGATATTTATGCAGTGGATGATAA ]
[-] EMBL CD075825 [ CCGTGAAATAGTTGAACAAATCCAACTTCGAGTAATGGATATTTATGCAGTGGATGATAAATTCAAAGCCAGTACACTTAATCGTTTCACTGATGAATTTTGAGTACAGTTTGTTGGCGAACAGCTTTGCATTTTTTATACTGTTTTGTCATGTACATTCGAAATGTATTGTAAAGAAAATTTAATATTCAAATTTGTTAACACTCGAGTTGTTTTGCATTGTTTCTTTCCACATTTTCCGTTTTTCATTTGACGATTTAGAATGATTTTTCGTGATTTTAAACATTGATTAATCAATAGTTTACTACTGTTTCCAAAATCCCATTCCTACTACAGACACTCGATCCTTTGAATATCCCAAAGTATCAATCATGTAGTTCAATGAGATGCATATACATACGTATATTTGTTACGGTGTTTTTGTATTCCTGCTTTTTACAAACGTCATATAGTTTCTTGTTGTGTTCATTTTCCAAGAACTACTTTTTGATGTATCCACTGGCGGATGTAAATAAATTAGTTG]
consensusID : consensus_9597#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 383 fasta sequence
[GGATCTTATCAGTCAGCTATGTGTTTAGATTTGCCCCAGGGCTATCGCTGCAGCTGTACTGCATTTAGCTTTACGGATTGCTGGTGTTGAAATACCTGGTAATCGACACTCTGAAATGGCCTGTTGGCAGGTATTTCAGATAGTTTGTCCCGTGAAATAGTTGAACAAATCCAACTTCGAGTAATGGATATTTATGCAGTGGATGATAAATTCAAAGCCAGTACACTTAATCGTTTCACTGATGAATTCTGAGTACAGTTTGTTGGCGAACAGCTTTGCATTTTTTATACTGTTTTGTCATGTACATTCGAAATGTATTGTAAAGAAAATCTAATATTCAAATTTGTTAACACTCGAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL AI395211 [GGATCTTATCAGTCAGCTATGTGTTTAGATTTGCCCCAGGGCTATCGCTGCAGCTGTACTGCATTTAGCTTTACGGATTGCTGGTGTTGAAATACCTGGTAATCGACACTCTGAAATGGCCTGTTGGCAGGTATTTCAGATAGTTTGTCCCGTGAAATAGTTGAACAAATCCAACTTCGAGTAATGGATATTTATGCAGTGGATGATAAATTCAAAGCCAGTACACTTAATCGTTTCACTGATGAATTCTGAGTACAGTTTGTTGGCGAACAGCTTTGCATTTTTTATACTGTTTTGTCATGTACATTCGAAATGTATTGTAAAGAAAATCTAATATTCAAATTTGTTAACACTCGAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9597#0 TTTTACTCTTGTGATTTGTTGCATGTTTTAGGATATTTCAAACATGTCTAGTCGTGAGGC 60
consensus_9597#1 ------------------------------------------------------------
consensus_9597#0 TCCAGCATCTATTTCAGCCATTCGTAATCCAAACAGTCAGCTTGCTGGTCTACCACCTAG 120
consensus_9597#1 ------------------------------------------------------------
consensus_9597#0 ACCTCCTCTTTCAGATGCGGCTTTGTTTTCTTTGATTTTAACTGTTCGGGAGGCCGGTCG 180
consensus_9597#1 ------------------------------------------------------------
consensus_9597#0 GCGTTTAGCAATGAGTGATTACGCCATCGCCACAGCTTGCACAATATTACACCGAGCTCT 240
consensus_9597#1 ------------------------------------------------------------
consensus_9597#0 ACGCGTTCTTACTACTGGTGATGAACAGCCAGTTACAACCCTCGCTACTTCTGGGTCAGC 300
consensus_9597#1 ------------------------------------------------------------
consensus_9597#0 AACTGTCAATGGATCTGATTCAGTTTCCGGTTTCGACTCAATCGACCAATCTTTTAAACA 360
consensus_9597#1 ------------------------------------------------------------
consensus_9597#0 TAGCTTAGGAGATATCGATGCACATACGATCGCTATGGCATCTGTCAGTCTTGGCGGTAA 420
consensus_9597#1 ------------------------------------------------------------
consensus_9597#0 AGTACAAGAAGAACATCAACGGCTGCGTGATGTGATTGTTTCTTATTACAGGACACTTCA 480
consensus_9597#1 ------------------------------------------------------------
consensus_9597#0 CAAAAACCGTCGTAGTCCTCTGGAAGTCGGTGATGATTATGATCGCTTACGTGAAAGTCT 540
consensus_9597#1 ------------------------------------------------------------
consensus_9597#0 TGTACAAACGGAATTATTTTTGATGCGATTGTTAGCTTATCACGTTCGTCGTCCTTCTCT 600
consensus_9597#1 ------------------------------------------------------------
consensus_9597#0 ACCACATCCATATCTAGTTCATTATCTTCATTCTTTACTCCATTGGGTTGGTAAAGGTAT 660
consensus_9597#1 ------------------------------------------------------------
consensus_9597#0 AGCACAACCATGCGGGTCCGATTTGAACGCTGGTGGAAATTCAGTAAATGCTTCTGCAAT 720
consensus_9597#1 ------------------------------------------------------------
consensus_9597#0 TGCATTAGCACGACTTCCCGGTTTGGCTTGGTCAATACTGGCGGATTCTTATCAGTCAGC 780
consensus_9597#1 -------------------------------------------GGATCTTATCAGTCAGC 17
* **************
consensus_9597#0 TATGTGTTTAGATTTTGCCCCAGAGCATATCGCTGCAGCTGTACTGCATTTAGCTTTACG 840
consensus_9597#1 TATGTGTTTAGATTT-GCCCCAGGGC-TATCGCTGCAGCTGTACTGCATTTAGCTTTACG 75
*************** ******* ** *********************************
consensus_9597#0 GATTGCTGGTGTTGAAATACCTGGTAATCGACACTCTGAAATGGCCTGGTGGCAGGCTAT 900
consensus_9597#1 GATTGCTGGTGTTGAAATACCTGGTAATCGACACTCTGAAATGGCCTGTTGGCAGG-TAT 134
************************************************ ******* ***
consensus_9597#0 TTCAGATAGTTTGTCCCGTGAAATAGTTGAACAAATCCAACTTCGAGTAATGGATATTTA 960
consensus_9597#1 TTCAGATAGTTTGTCCCGTGAAATAGTTGAACAAATCCAACTTCGAGTAATGGATATTTA 194
************************************************************
consensus_9597#0 TGCAGTGGATGATAAATTCAAAGCCAGTACACTTAATCGTTTCACTGATGAATTTTGAGT 1020
consensus_9597#1 TGCAGTGGATGATAAATTCAAAGCCAGTACACTTAATCGTTTCACTGATGAATTCTGAGT 254
****************************************************** *****
consensus_9597#0 ACAGTTTGTTGGCGAACAGCTTTGCATTTTTTATACTGTTTTGTCATGTACATTCGAAAT 1080
consensus_9597#1 ACAGTTTGTTGGCGAACAGCTTTGCATTTTTTATACTGTTTTGTCATGTACATTCGAAAT 314
************************************************************
consensus_9597#0 GTATTGTAAAGAAAATTTAATATTCAAATTTGTTAACACTCGAGTTGTTTTGCATTGTTT 1140
consensus_9597#1 GTATTGTAAAGAAAATCTAATATTCAAATTTGTTAACACTCGAAAAAAAAAAAAAAAAAA 374
**************** ************************** *
consensus_9597#0 CTTTCCACATTTTCCGTTTTTCATTTGACGATTTAGAATGATTTTTCGTGATTTTAAACA 1200
consensus_9597#1 AAAAAAAAA--------------------------------------------------- 383
* *
consensus_9597#0 TTGATTAATCAATAGTTTACTACTGTTTCCAAAATCCCATTCCTACTACAGACACTCGAT 1260
consensus_9597#1 ------------------------------------------------------------
consensus_9597#0 CCTTTGAATATCCCAAAGTATCAATCATGTAGTTCAATGAGATGCATATACATACGTATA 1320
consensus_9597#1 ------------------------------------------------------------
consensus_9597#0 TTTGTTACGGTGTTTTTGTATTCCTGCTTTTTACAAACGTCATATAGTTTCTTGTTGTGT 1380
consensus_9597#1 ------------------------------------------------------------
consensus_9597#0 TCATTTTCCAAGAACTACTTTTTGATGTATCCACTGGCGGATGTAAATAAATTAGTTG 1438
consensus_9597#1 ----------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||