cluster # 9599

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Schistosoma mansoni
cluster # 9599 cluster # 9599 Sequences # 10 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9599#0 length = 634 sequences # 7
consensus_9599#1 length = 375 sequences # 1

consensus_9599#2 length = 291 sequences # 1
consensus_9599#3 length = 212 sequences # 1

consensusID : consensus_9599#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 634
fasta sequence

                              [AATCTTGTTTTCAGTCCAGTTCAAATTATTACTCAATTTTTAAAAGCAGTTAGCAACTAAATTATTCTTCAATAGTTTACCCTTTAT-CATTATTATTAAAAAAAAGTTATTCACGTATCCAAGATAAAGAGATTTCATAAAGATTCCAATATTATTCACTGATACATTTCAACTGACCTTATAATTACATAATAAGAAATGTCCATGTATAAAATTAATAATTCTGTGATTAAAAATGCTGATATGACGCATG-AAATGCAAAAACGTGCTCTTTCTATTGGAATTGATTCAGTTCGAAAATATGAATTAGAAAAAGATATAGCTGATCATTTAAAAAAAGAGTTTGATCAAAAATATGGTCCAACATGGCATTGTATAGTGGGTAGGAATTTTGGCAGTTCTATAACTCATGAACCAGATAGTTTCATCTATTTTTACGTGGAGAAGTATGCTGTACTACTATATAAATCAGGATAGAATTTCATTTAGTTTAACTTACTNATCAATCTAATAACAATAATCCATGTGAATGTACTACAATGTAACGTATGTGAAGGAGTGATGTTTACTTATTACTGGTGGCCATGTGTNGGTAAAATGTNTATTGCTATTCTTATTATTATGGNATCAANAC]

[+] EMBL SMAA28934            [AATCTTGTTTTCAGTCCAGTTCAAATTATTACTCAATTTTTAAAAGCAGTTAGCAACTAAATTATTCTTCAATAGTTTACCCTTTATCCATTATTATTAAAAAAAAGTTA TCACGTATCCAAGAT AAGAGATTTCATAAAGA TCCAATATTATTCACTGATACATTTCAACTGACCTTATAATTACATAATAAGAAATGTCCATGTATAAAATTAATAATTCTGTGATT AAAATGCTGATATGA                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL SMAA14097            [                                          AAAGCAGTTAGCAACTAAATTATTCTTCAATAGTTTACCCTTTAT CATTATTATTAAAAAAAAGTTATTCACGTATCCAAGATAAAGAGATTTCATAAAGATTCCAATATTATTCACTGATACATTTCAACTGACCTTATAATTACATAATAAGAAATGTCCATGTATAAAATTAATAATTCCGTGATTAAAAATGCTGATATGACGCATG AAATG AAAAACGNGCTCTTTCTATTGGAATTGATTCAG TCGAAAATATGAATTAGAA                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL SMAA14067            [                                          AAAGCAGTTAGCAACTAAATTATTCTTCAATAGTTTACCCTTTAT CATTATTATTAAAAAAAAGTTATTCACGTATCCAAGATAAAGAGATTTCATAAAGATTCCAATATTATTCNCTGATACATTTCAACTGACCTTATAATTACATAATAAGAAATGTCCATGTATAAAATTAATAATTCCGTGATTAAAAAAGCTGATAT                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD185116             [                                                  TAGCAACTAAATTATTCTTCAATAGTTTACCCTTTAT CATTATTATTAAAAAAAAGTTATTCACGTATCCAAGATAAAGAGATTACATAAAGATTCCAATATTATTCACTGATACATTTCAACTGACCTTATAATTACATAATAAGAAATGTCCATGTATAAAATTAATAATTCTGTGATTAAAAATGCTGATATGACGCATG AAATGCAAAAACGTGCTCTTTCTATTGGAATTGATTCAGTTCGAAAATATGAATTAGAAAAAGATATAGCTGATCATTTAAAAAAA                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD202955             [                                                                                                                                                    AATATTATTCACTGATACATTTCAACTGACCTTATAATTACATAATAAGAAATGTCCATGTATAAAATTAATAATTCTGTGATTAAAAATGCTGATATGACGCATG AAGTGCAAAAACGTGCTCTTTCTATTGGAATTGATTCAGTTCGAAAATATGAATTAGAAAAAGATATAGCTGATCATTTAAAAAAAGAGTTTGATCCAAAATATGGTC                                                                                                                                                                                                                                                                                 ]
[+] EMBL SM608                [                                                                                                                                                                                                                                        AAAAATGCTGATATGACGCATGNAAATGCAAAAACGTGCTCTTTCTATTGGAATTGATTCAGTTCGAAAATATGAATTAGAAAAAGATATAGCTGATCATTTAAAAAAAGAGTTTGATCAAAAATATGGTCCAACATGGCATTGTATAGTGGGTAGGAATTTTGGCAGTTCTATAACTCATGAACCAGATAGTTTCATCTATTTTTACGTGGAGAAGTATGCTGTACTACTATATAAATCAGGATAGAATTTCATTTAGTTTAACTTACTNATCAATCTAATAACAATAATCCATGTGAATGTACTACAATGTAACGTATGTGAAGGAGTGATGTTTACTTATTACTGGTGGCCATGTGTN                                           ]
[+] EMBL SM943                [                                                                                                                                                                                                                                         AAAATG TGATATGACGNATG AAATGCAAAAACGTGCTCTTTCTATTGGAATGGATTCAGTNCGAAANTATGATTTAGAAAANGATTTNGCTGANCATTTAAAAAANGAGTTGGATCAAAANTNTGGTCCAACATGGCATGGTNTAGTGGGTAGGAATTTGGGCAGTTCTATAACTCATGAACCAGATAGTTTCATCTATTTTTACGTGGAGAAGTATGCTGTACTACTATATAAATCAGGATAGAATTTCATTTAGTTTAACTTACTTATCAATCTAATAACAATAATCCATGTGAATGTACTACAATGTAACGTATGTGAAGGAGTGATGTTTACTTATAACTTGT GNCATGTGTGGGTAAAATGTNTATTGCTATTCTTATTATTATGGNATCAANAC]




>consensus_9599#0
AATCTTGTTTTCAGTCCAGTTCAAATTATTACTCAATTTTTAAAAGCAGTTAGCAACTAA
ATTATTCTTCAATAGTTTACCCTTTATCATTATTATTAAAAAAAAGTTATTCACGTATCC
AAGATAAAGAGATTTCATAAAGATTCCAATATTATTCACTGATACATTTCAACTGACCTT
ATAATTACATAATAAGAAATGTCCATGTATAAAATTAATAATTCTGTGATTAAAAATGCT
GATATGACGCATGAAATGCAAAAACGTGCTCTTTCTATTGGAATTGATTCAGTTCGAAAA
TATGAATTAGAAAAAGATATAGCTGATCATTTAAAAAAAGAGTTTGATCAAAAATATGGT
CCAACATGGCATTGTATAGTGGGTAGGAATTTTGGCAGTTCTATAACTCATGAACCAGAT
AGTTTCATCTATTTTTACGTGGAGAAGTATGCTGTACTACTATATAAATCAGGATAGAAT
TTCATTTAGTTTAACTTACTNATCAATCTAATAACAATAATCCATGTGAATGTACTACAA
TGTAACGTATGTGAAGGAGTGATGTTTACTTATTACTGGTGGCCATGTGTNGGTAAAATG
TNTATTGCTATTCTTATTATTATGGNATCAANAC

consensusID : consensus_9599#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 375
fasta sequence

                              [TTGNATTCAGNTCGNAAAATATGAAATTAGAAAAAGATATAGCTGATCATTTACAAAAAGAGTTTGATCAAAAATATGGCCCAACATGGNATTGTTTAGTGGGTAGGAATGTTGGCAGTNCTATAACTCATGAACCAGATAGTNTCATCTATTTNNACGTGGAGAAGTATGCTGNACTACTATATACATCAGGATAGAATTTCATNTAGTTTAACTTACTTATCANTCTAATAACAATNATCCANGTGAAATGTACTACAATGTAACGTATGTGAAGGAGTGATGTTTACTTATAACTTGTNGNTCATGTGTTGTGNTTAANATGTTTNATTGCTATTCTTATTATTATTGTTATTCAANACAATGGNAACTGNT]

[+] EMBL SM767                [TTGNATTCAGNTCGNAAAATATGAAATTAGAAAAAGATATAGCTGATCATTTACAAAAAGAGTTTGATCAAAAATATGGCCCAACATGGNATTGTTTAGTGGGTAGGAATGTTGGCAGTNCTATAACTCATGAACCAGATAGTNTCATCTATTTNNACGTGGAGAAGTATGCTGNACTACTATATACATCAGGATAGAATTTCATNTAGTTTAACTTACTTATCANTCTAATAACAATNATCCANGTGAAATGTACTACAATGTAACGTATGTGAAGGAGTGATGTTTACTTATAACTTGTNGNTCATGTGTTGTGNTTAANATGTTTNATTGCTATTCTTATTATTATTGTTATTCAANACAATGGNAACTGNT]




>consensus_9599#1
TTGNATTCAGNTCGNAAAATATGAAATTAGAAAAAGATATAGCTGATCATTTACAAAAAG
AGTTTGATCAAAAATATGGCCCAACATGGNATTGTTTAGTGGGTAGGAATGTTGGCAGTN
CTATAACTCATGAACCAGATAGTNTCATCTATTTNNACGTGGAGAAGTATGCTGNACTAC
TATATACATCAGGATAGAATTTCATNTAGTTTAACTTACTTATCANTCTAATAACAATNA
TCCANGTGAAATGTACTACAATGTAACGTATGTGAAGGAGTGATGTTTACTTATAACTTG
TNGNTCATGTGTTGTGNTTAANATGTTTNATTGCTATTCTTATTATTATTGTTATTCAAN
ACAATGGNAACTGNT

consensusID : consensus_9599#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 291
fasta sequence

                              [ATTTTAACTGGGGAAGTATGCTGTACTACTATTTAAATCCGGGTGAATTTCATTAGTTTAACTTACTTATCAATCTAATAACATAATCCATGTGAATGTACTACAATGTAACGTATGTGAAGGAGTGATGTTTACTTATAACTTGTAGTCATGTGTTGTGTTAAAATGTTTTAATGCTAATCTTATTATTATTGTTATTCAATACAATGAAACTGTTAATACAATAGTTATATTGTCAAAAAAAAAAAAHAHHAAAANNBNAAAAACATGCCATGCAACTGCATTACCCGT]

[-] EMBL AI447069             [ATTTTAACTGGGGAAGTATGCTGTACTACTATTTAAATCCGGGTGAATTTCATTAGTTTAACTTACTTATCAATCTAATAACATAATCCATGTGAATGTACTACAATGTAACGTATGTGAAGGAGTGATGTTTACTTATAACTTGTAGTCATGTGTTGTGTTAAAATGTTTTAATGCTAATCTTATTATTATTGTTATTCAATACAATGAAACTGTTAATACAATAGTTATATTGTCAAAAAAAAAAAAHAHHAAAANNBNAAAAACATGCCATGCAACTGCATTACCCGT]




>consensus_9599#2
ATTTTAACTGGGGAAGTATGCTGTACTACTATTTAAATCCGGGTGAATTTCATTAGTTTA
ACTTACTTATCAATCTAATAACATAATCCATGTGAATGTACTACAATGTAACGTATGTGA
AGGAGTGATGTTTACTTATAACTTGTAGTCATGTGTTGTGTTAAAATGTTTTAATGCTAA
TCTTATTATTATTGTTATTCAATACAATGAAACTGTTAATACAATAGTTATATTGTCAAA
AAAAAAAAAHAHHAAAANNBNAAAAACATGCCATGCAACTGCATTACCCGT

consensusID : consensus_9599#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 212
fasta sequence

                              [CTGTCCTCCTCACTAAATCCGGGTCGAGTGTCATTTTAGTTAGACTTCCTTTTCAATCTATTACCAATAATCCAGTGGAGTGTACTCCAATGTAACGTATGTGAAGGAGTGATGTTTACTTATAACTTGTAGTCATGTGTTGTGTTAAAATGTTTTATTGCTATTCCTATTATTATTGTTATTCAATACAATGAAACTGTTAATACAATAGT]

[-] EMBL AI739702             [CTGTCCTCCTCACTAAATCCGGGTCGAGTGTCATTTTAGTTAGACTTCCTTTTCAATCTATTACCAATAATCCAGTGGAGTGTACTCCAATGTAACGTATGTGAAGGAGTGATGTTTACTTATAACTTGTAGTCATGTGTTGTGTTAAAATGTTTTATTGCTATTCCTATTATTATTGTTATTCAATACAATGAAACTGTTAATACAATAGT]




>consensus_9599#3
CTGTCCTCCTCACTAAATCCGGGTCGAGTGTCATTTTAGTTAGACTTCCTTTTCAATCTA
TTACCAATAATCCAGTGGAGTGTACTCCAATGTAACGTATGTGAAGGAGTGATGTTTACT
TATAACTTGTAGTCATGTGTTGTGTTAAAATGTTTTATTGCTATTCCTATTATTATTGTT
ATTCAATACAATGAAACTGTTAATACAATAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9599#2      ------------------------------------------------------------
consensus_9599#3      ------------------------------------------------------------
consensus_9599#0      AATCTTGTTTTCAGTCCAGTTCAAATTATTACTCAATTTTTAAAAGCAGTTAGCAACTAA 60
consensus_9599#1      ------------------------------------------------------------
                                                                                  

consensus_9599#2      ------------------------------------------------------------
consensus_9599#3      ------------------------------------------------------------
consensus_9599#0      ATTATTCTTCAATAGTTTACCCTTTATCATTATTATTAAAAAAAAGTTATTCACGTATCC 120
consensus_9599#1      ------------------------------------------------------------
                                                                                  

consensus_9599#2      ------------------------------------------------------------
consensus_9599#3      ------------------------------------------------------------
consensus_9599#0      AAGATAAAGAGATTTCATAAAGATTCCAATATTATTCACTGATACATTTCAACTGACCTT 180
consensus_9599#1      ------------------------------------------------------------
                                                                                  

consensus_9599#2      ------------------------------------------------------------
consensus_9599#3      ------------------------------------------------------------
consensus_9599#0      ATAATTACATAATAAGAAATGTCCATGTATAAAATTAATAATTCTGTGATTAAAAATGCT 240
consensus_9599#1      ------------------------------------------------------------
                                                                                  

consensus_9599#2      ------------------------------------------------------------
consensus_9599#3      ------------------------------------------------------------
consensus_9599#0      GATATGACGCATGAAATGCAAAAACGTGCTCTTTCTATTGGAATTGATTCAGTTCGAAAA 300
consensus_9599#1      ------------------------------------------TTGNATTCAGNTCGNAAA 18
                                                                                  

consensus_9599#2      ------------------------------------------------------------
consensus_9599#3      ------------------------------------------------------------
consensus_9599#0      -TATGAA-TTAGAAAAAGATATAGCTGATCATTTAAAAAAAGAGTTTGATCAAAAATATG 358
consensus_9599#1      ATATGAAATTAGAAAAAGATATAGCTGATCATTTACAAAAAGAGTTTGATCAAAAATATG 78
                                                                                  

consensus_9599#2      ------------------------------------------------------------
consensus_9599#3      ------------------------------------------------------------
consensus_9599#0      GTCCAACATGGCATTGTATAGTGGGTAGGAATTTTGGCAGTTCTATAACTCATGAACCAG 418
consensus_9599#1      GCCCAACATGGNATTGTTTAGTGGGTAGGAATGTTGGCAGTNCTATAACTCATGAACCAG 138
                                                                                  

consensus_9599#2      -------------ATTTTAACTGGGGAAGTATGCTGTACTACTATTTAAATCCGGGT-GA 46
consensus_9599#3      ---------------------------------CTGTCCTCCTCACTAAATCCGGGTCGA 27
consensus_9599#0      ATAGTTTCATCTATTTTTACGTGGAGAAGTATGCTGTACTACTATATAAATCAGGATAGA 478
consensus_9599#1      ATAGTNTCATCTATTTNNACGTGGAGAAGTATGCTGNACTACTATATACATCAGGATAGA 198
                                                       ***  ** **   ** *** ** * **

consensus_9599#2      ATTTCATT--AGTTTAACTTACTTATCAATCTAATAACA-TAATCCATGTGAA-TGTACT 102
consensus_9599#3      GTGTCATTTTAGTTAGACTTCCTTTTCAATCTATTACCAATAATCCAGTGGAG-TGTACT 86
consensus_9599#0      ATTTCATTT-AGTTTAACTTACTNATCAATCTAATAACAATAATCCATGTGAA-TGTACT 536
consensus_9599#1      ATTTCATNT-AGTTTAACTTACTTATCANTCTAATAACAATNATCCANGTGAAATGTACT 257
                       * ****   ****  **** **  *** **** ** ** * *****   **  ******

consensus_9599#2      ACAATGTAACGTATGTGAAGGAGTGATGTTTACTTATAACTTGTAGT-CATGTGTTGTGT 161
consensus_9599#3      CCAATGTAACGTATGTGAAGGAGTGATGTTTACTTATAACTTGTAGT-CATGTGTTGTGT 145
consensus_9599#0      ACAATGTAACGTATGTGAAGGAGTGATGTTTACTTATTACTGGTGGC-CATGTGTNGG-- 593
consensus_9599#1      ACAATGTAACGTATGTGAAGGAGTGATGTTTACTTATAACTTGTNGNTCATGTGTTGTGN 317
                       ************************************ *** ** *  ******* *   

consensus_9599#2      -TAAAATGTTTTAATGCTAATCTTATTATTATTGTTATTCAATACAATGAAACTGTTAAT 220
consensus_9599#3      -TAAAATGTTTTATTGCTATTCCTATTATTATTGTTATTCAATACAATGAAACTGTTAAT 204
consensus_9599#0      -TAAAATGTNTA-TTGCTATTCTTATTATTATGGNA--TCAANAC--------------- 634
consensus_9599#1      TTAANATGTTTNATTGCTATTCTTATTATTATTGTTATTCAANACAATGGNAACTGNT-- 375
                       *** **** *   ***** ** ********* *    **** **               

consensus_9599#2      ACAATAGTTATATTGTCAAAAAAAAAAAAHAHHAAAANNBNAAAAACATGCCATGCAACT 280
consensus_9599#3      ACAATAGT---------------------------------------------------- 212
consensus_9599#0      ------------------------------------------------------------
consensus_9599#1      ------------------------------------------------------------
                                                                                  

consensus_9599#2      GCATTACCCGT 291
consensus_9599#3      -----------
consensus_9599#0      -----------
consensus_9599#1      -----------