cluster # 9607

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Schistosoma mansoni
cluster # 9607 cluster # 9607 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9607#0 length = 822 sequences # 4

consensus_9607#1 length = 539 sequences # 6

consensusID : consensus_9607#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 822
fasta sequence

                              [TTTGTCCCAACGTGAGATCTAGTCCCTCCTAAAGGAGAGTAATAGGTACTGAAGGTGGTGAACAATTTTAACATTTCGTATTATGTGCTTGTTCTGTATTTTTTTATTCTTGAGTGGACATAAAACCGCATTCTCGTAGTCGCTAGAAAAATACCCATCAGAATGACTAGCTCTAATTCTGACGATCGCAATATTTTCGTCTCGCCATTTTTGAATTTTGACCCATCTATTTTGGTCTCGAATCCCGAAGAGCAGTTCATCTTTCCTGAAGGGGAGAAACGTCGAGGTCGCTTTGAGCGATCGTTTTCCGAAATCGGAGCTATGGTTATTGGGGGTGCATCTGTTGGGGGGATCAAGGGATTATACAGCGGTTTTAAAGATTCGGAAATAAAAAATCTTCCGACACTTGCTATTAGACGAACTCAAATGCTGAATCATCTGACGAAATCCGGAGCAACACTTGCTCAGACTGCAGGTTCTATAGGGTTTATATACGCTGTGGCAGATTTCTTGATCTACAAATTACGTGGTAATGCAGAAGATGAGATAAATACAATGGCAGCAGCTACGACTACCGGCTTAGTGTATACCTCTCCAGGAATGTTTAAACCAGGTGGCTGGAAACGTTGCGGCTTTGGTGGGTTAGCTGGATTTGCTGTTGGTACGATCGCTGTTACTGTTACAAGCTGGTCTAGAATAAAACATATGCTTGGTGGATAAACGACAATATTGTAATTTTAATTATGTACATTGACATTTTATCTAGTATCCGAAAAAATTACTTTTTAAATATACCTTGAATTGTTAAAAAAAAAAAAAAAA]

[+] EMBL CD124307             [TTTGTCCCAACGTGAGATCTAGTCCCTCCTAAAGGAGAGTAATAGGTACTGAAGGTGGTGAACAATTTTAACATTTCGTATTATGTGCTTGTTCTGTATTTTTTTATTCTTGAGTGGACATAAAACCGCATTCTCGTAGTCGCTAGAAAAATACCCATCAGAATGACTAGCTCTAATTCTGACGATCGCAATATTTTCGTCTCGCCATTTTTGAATTTTGACCCATCTATTTTGGTCTCGAATCCCGAAGAGCAGTTCATCTTTCCTGAAGGGGAGAAACGTCGAGGTCGCTTTGAGCGATCGTTTTCCGAAATCGGAGCTATGGTTATTGGGGGTGCATCTGTTGGGGGGATCAAGGGATTATACAGCGGTTTTAAAGATTCGGAAATAAAAAATCTTCCGACACTTGCTATTAGACGAACTCAAATGCTGAATCATCTGACGAAATCCGGAGCAACACTTGCTCAGACTGCAGGTTCTATAGGGTTTATATACGCTGTGGCAGATTTCTTGATCTACAAATTACGTGGTAATGCAGAAGATGAGATAAATACAATGGCAGCAGCTACGACTACCGGCTTAGTGTATACCTC                                                                                                                                                                                                                                     ]
[-] EMBL CD163025             [                                                                                                                                                                                                                                                                                                                                                                      GATTATACAGCGGTTTTAAAGATTCGGAAATAAAAAATCTTCCGACACTTGCTATTAGACGAACTCAAATGCTGAATCATCTGACGAAATCCGGAGCAACACTTGCTCAGACTGCAGGTTCTATAGGGTTTATACACGCTGTGGCAGATTTCTTGATCTACAAATTACGTGGTAATGCAGAAGATGAGATAAATACAATGGCGGCAGCTACGACTACCGGCTTAGTGTATACCTCTCCAGGAATGTTTAAACCAGGTGGCTGGAAACGTTGCGGCTTTGGTGGGTTAGCTGGATTTGCTGTTGATACGATCGCTGTTACTGTTACAAGCTGGTCTAGAATA                                                                                                                           ]
[-] EMBL AI395159             [                                                                                                                                                                                                                                                                                                                                                                                                                        gtTATTAGACGAACTCAAATGCTGAATCATCTGACGAAATCCGGAGCAACACTTGCTCAGACTGCAGGTTCTATAGGGTTTATATACGCTGTGGCAGATTTCTTGATCTACAAATTACGTGCAAATGCAGAAGATGAGATAAATACAATGGCAGCAGCTACGACTACCGGCTTAGTGTATACCTCTCCAGGAATGTTTAAACCAGGTGGCTGGAAACGTTGCGGCTTTGGTGGGTTAGCTGGATTTGCTGTTGGTACGATCGCTGTTACTGTTACAAGCTGGTCTAGAATAAAACATATGCTTGGTGGATAAACGACAATATTGTAATTTTAATTATGTACATTGACATTTTATCTAGTATCCGAAAAAATTACTTTTTAAATATACCTTGAATTGTTAAAAAAAAAAAAAAAA]
[+] EMBL AA559408             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GATAAATACAATGGCAGCAGCTACNACTACCGGCTTAGTGTATACCTCTCCAGGAATGTTTAAACCAGGTGGCTGGAAACGTTGCGGCTTTGGTGGGTTAGCTGGATTTGCTGTTGGTACNATCGCTGTTACTGTTACAAGCTGGTCTAAAATAAAACATATGCTTGGTGGATAAACNACAATATTGTAATTTTAATTATGTACATTGACATTTTATCTAGTATCCGAAAAAATTACTTTTTAAATATACCT                         ]




>consensus_9607#0
TTTGTCCCAACGTGAGATCTAGTCCCTCCTAAAGGAGAGTAATAGGTACTGAAGGTGGTG
AACAATTTTAACATTTCGTATTATGTGCTTGTTCTGTATTTTTTTATTCTTGAGTGGACA
TAAAACCGCATTCTCGTAGTCGCTAGAAAAATACCCATCAGAATGACTAGCTCTAATTCT
GACGATCGCAATATTTTCGTCTCGCCATTTTTGAATTTTGACCCATCTATTTTGGTCTCG
AATCCCGAAGAGCAGTTCATCTTTCCTGAAGGGGAGAAACGTCGAGGTCGCTTTGAGCGA
TCGTTTTCCGAAATCGGAGCTATGGTTATTGGGGGTGCATCTGTTGGGGGGATCAAGGGA
TTATACAGCGGTTTTAAAGATTCGGAAATAAAAAATCTTCCGACACTTGCTATTAGACGA
ACTCAAATGCTGAATCATCTGACGAAATCCGGAGCAACACTTGCTCAGACTGCAGGTTCT
ATAGGGTTTATATACGCTGTGGCAGATTTCTTGATCTACAAATTACGTGGTAATGCAGAA
GATGAGATAAATACAATGGCAGCAGCTACGACTACCGGCTTAGTGTATACCTCTCCAGGA
ATGTTTAAACCAGGTGGCTGGAAACGTTGCGGCTTTGGTGGGTTAGCTGGATTTGCTGTT
GGTACGATCGCTGTTACTGTTACAAGCTGGTCTAGAATAAAACATATGCTTGGTGGATAA
ACGACAATATTGTAATTTTAATTATGTACATTGACATTTTATCTAGTATCCGAAAAAATT
ACTTTTTAAATATACCTTGAATTGTTAAAAAAAAAAAAAAAA

consensusID : consensus_9607#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 539
fasta sequence

                              [TTANCGAGAGAGGACTTTTAACTTTGTCCCAAC-----GTATTTTTTTATTCTTGAGTGGACATAAAACCGCATTCTCGTAGTCGCTAGAAAAATACCCATCAGAATGACTAGCTCTAATTCTGACGATCGCAATATTTTCGTCTCGCCATTTTTGAATTTTGACCCATCTATTTTGGTCTCGAATCCCGAAGAGCAGTTCATCTTTCCTGAAGGGGAGAAACGTCGAGGTCGCTTTGAGCGATCGTTTTCCGAAATCGGAGCTATGGTTATTGGGGGTGCATCTGTTGGGGGGATCAAGGGATTATACAGCGGTTTTAAAGATTCGGAAATAAAAAATCTTCCGACACTTGCTATTAGACGAACTCAAATGCTGAATCATCTGACGAAATCCGGAGCAACACTTGCTCAGACTGCAGGTTCTATAGGGTTTATATACGCTGTGGCAGATTTCTTGATCTACAAATTACGTGGTAATGCAGAAGATGAGATAAATACAATGGCAGCAGCTACGACTACCGGCTTAGTGTATACCTCTCCAGGAA]

[+] EMBL CD197915             [TTANCGAGAGAGGACTTTTAACTTTGTCCC AT     GT CTCTTTTATTCTTGAGTGGACATAAAACCGCATTCTCGTAGTCGCTAGAAAAATACCCATCAGAATGACTAGCTCTAATTCTGACGATCGCAATATTTTCGTCTCGCCATTTTTGAATTTTGACCCATCTATTTTGGTCTCGAATCCCGAAGAGCAGTTCATCTTTCCTGAAGGGGAGAAACGTCGAGGTCGCTTTGAGCGATCGTTTTCCGAAATCGGAGCTATGGTTATTGGGGGTGCATCTGTTGGGGGGATCAGGGGATTATACAGCGGTTTTAAAGATTCGGAAATAAAAAATCTTCCGACACTTGCTATTAGACGAACTCAAATGCTGAATCATCTGACGAAATCCGGAGCAACACTTGCTCAGACTGCAGGTTCTATAGGGTTTATATACGCTGTGGCAGATTTCTTGATCTACAAATTACGTGGTAATGCAGAAGATGAGATAAATACAATGGCAGCAGCTACGACTACCGGC                      ]
[-] EMBL CD133155             [                TTTAACTTTGTCCCAACGTGAGGTATTTTTTTATTCTTGAGTGGACATAAAACCGCATTCTCGTAGTCGCTAGAAAAATACCCATCAGAATGACTAGCTCTAATTCTGACGATCGCAATATTTTCGTCTCGCCATTTTTGAATTTTGACCCATCTATTTTGGTCTCGAATCCCGAAGAGCAGTTCATCTTTCCTGAAGGGGAGAAACGTCGAGGTCGCTTTGAGCGATCGTTTTCCGAAATCGGAGCTATGGTTATTGGGGGTGCATCTGTTGGGGGGATCAAGGGATTATACAGCGGTTTTAAAGATTCGGAAATAAAAAATCTTCCGACACTTGCTATTAGACGAACTCAAATGCTGAATCATCTGACGAAATCCGGAGCAACACTTGCTCAGACTGCAGGTTCTATAGGGTTTATATACGCTGTGGCAGATTTCTTGATCTACAAATTACGTGGTAATGCAGAAGATGAGATAAATACAATGGCAGCAGCTACGACTACCGGCTTAGTG                ]
[+] EMBL CD189246             [                     CTTTGTCCCAAC     GTATTTTTTTATTCTTGAGTGGACATAAAACCGCATTCTCGTAGTCGCTAGAAAAATACCCATCAGAATGACTAGCTCTAATTCTGACGATCGCAGTATTTTCGTCTCGCCATTTTTGAATTTTGACCCATCTATTTTGGTCTCGAATCCCGAAGAGCAGTTCATCTTTCCTGAAGGGGAGAAACGTCGAGGTCGCTTTGAGCGATCGTTTTCCGAAATCGGAGCTATGGTTATTGGGGGTGCATCTGTTGGGGGGATCAAGGGATTATACAGCGGTTTTAAAGATTCGGAAATAAAAAATCTTCCGACACTTGCTATTAGACGAACTCAAATGCTGAATCATCTGACGAAATCCGGAGCAACACTTGCTCAGACTGCAGGTTCTATAGGGTTTATATACGCTGTGGCAGATTTCTTGATCTACAAATTACGTGGTAATGCAGAAGATGAGATAAATACCATGGCAGCAGCTACGACTACCGGCTTAGTGTATACCTCTCCAGG  ]
[+] EMBL CD094970             [                      TTTGTCCCAAC     GTATTTTTTTATTCTTGAGTGGACATAAAACCGCATTCTCGTAGTCGCTAGAAAAATACCCATCAGAATGACTAGTTCTAATTCTGACGATCGCAATATTTTCGTCTCGCCATTTTTGAATTTTGACCCATCTATTTTGGTCTCGAATCCCGAAGAGCAGTTCATCTTTCCTGAAGGGGAGAAACGTCGAGGTCGCTTTGAGCGATCGTTTTCCGAAATCGGAGCTATGGTTATTGGGGGTGCATCTGTTGGGGGGATCAAGGGATTATACAGCGGTTTTAAAGATTCGGAAATAAAAAATCTTCCGACACTTGCTATTAGACGAACTCAAATGCTGAATCATCTGACGAAATCCGGAGCAACAC                                                                                                                                             ]
[-] EMBL CD162963             [                       TTGTCCCAAC     GTATTTTTTTATTCTTGAGTGGACATAAAACCGCATTCTCGTAGTCGCTAGAAAAATACCCATCAGAATGACTAGCTCTAATTCTGACGATCGCAATATTTTCGTCTCGCCATTTTTGAATTTTGACCCATCTATTTTGGTCTCGAATCCCGAAGAGCAGTTCATCTTTCCTGAAGGGGAGAAACGTCGAGGTCGCTTTGAGCGATCGTTTTCCGAAATCGGAGCTATGGTTATTGGGGGTGCATCTGTTGGGGGGATCAAGGGATTATACAGCGGTTTTAAAGATTCGGAAATAAAAAATCTTCCGACACTTGCTATTAGACGAACTCAAATGCTGAATCATCTGACGAAATCCGGAGCAACACTTGCTCAGACTGCAGGTTCTATAGGGTTTATATACGCTGTGGCAGATTTCTTGATCTACAAATTACGTGGTGATGCAGAAGATGAGATAAATACAATGGCAGCAGCTACGACTACCGGCTTAGTGTATACCTCTCCAGGAA]
[-] EMBL CD188484             [                       TTGTCCCAAC     GTA TTTTTTATTCTTGAGTGGACATAAAACCGCATTCTCGTAGTCGCTAGAAAAATACCCATCAGAATGACTAGCTCTAATTCTGACGATCGCAATATTTTCGTCTCGCCATTTTTGAATTTTGACCCATCTATTTTGGTCTCGAATCCCGAAGAGCAGTTCATCTTTCCTGGAGGGGAGAAACGTCGAGGTCGCTTTGAGCGATCGTTTTCCGAAATCGGAGCTATGGTTATTGGGGGTGCATCTGTTGGGGGGATCAAGGGATTATACAGCGGTTTTAAAGATTCGGAAATAAAAAATCTTCCGACACTTGCTATTAGACGAACTCAAATGCTGAATCATCTGACGAAATCCGGAGCAACACTTGCTCAGACTGCAGGTTCTATAGGGTTTATATACGCTGTGGCAGATTTCTTGATCTACAAATTACGTGGTAATGCAGAAGATGAGATAAATACAATGGCAGCAGCTACGACTACCGGCTTAGTGTATACCTCTCCAGGA ]




>consensus_9607#1
TTANCGAGAGAGGACTTTTAACTTTGTCCCAACGTATTTTTTTATTCTTGAGTGGACATA
AAACCGCATTCTCGTAGTCGCTAGAAAAATACCCATCAGAATGACTAGCTCTAATTCTGA
CGATCGCAATATTTTCGTCTCGCCATTTTTGAATTTTGACCCATCTATTTTGGTCTCGAA
TCCCGAAGAGCAGTTCATCTTTCCTGAAGGGGAGAAACGTCGAGGTCGCTTTGAGCGATC
GTTTTCCGAAATCGGAGCTATGGTTATTGGGGGTGCATCTGTTGGGGGGATCAAGGGATT
ATACAGCGGTTTTAAAGATTCGGAAATAAAAAATCTTCCGACACTTGCTATTAGACGAAC
TCAAATGCTGAATCATCTGACGAAATCCGGAGCAACACTTGCTCAGACTGCAGGTTCTAT
AGGGTTTATATACGCTGTGGCAGATTTCTTGATCTACAAATTACGTGGTAATGCAGAAGA
TGAGATAAATACAATGGCAGCAGCTACGACTACCGGCTTAGTGTATACCTCTCCAGGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9607#0      TTTGTCCCAACGTGAGATCTAGTCCCTCCTAAAGGAGAGTAATAGGTACTGAAGGTGGTG 60
consensus_9607#1      ----------------------------------------------------------TT 2
                                                                                * 

consensus_9607#0      AACAATTTTAACATTTCGTATTATGTGCTTGTTCTGTATTTTTTTATTCTTGAGTGGACA 120
consensus_9607#1      ANCGAGAG-AGGACTTTTAACTTTGTCCCAAC---GTATTTTTTTATTCTTGAGTGGACA 58
                      * * *    *  * **   * * *** *       *************************

consensus_9607#0      TAAAACCGCATTCTCGTAGTCGCTAGAAAAATACCCATCAGAATGACTAGCTCTAATTCT 180
consensus_9607#1      TAAAACCGCATTCTCGTAGTCGCTAGAAAAATACCCATCAGAATGACTAGCTCTAATTCT 118
                      ************************************************************

consensus_9607#0      GACGATCGCAATATTTTCGTCTCGCCATTTTTGAATTTTGACCCATCTATTTTGGTCTCG 240
consensus_9607#1      GACGATCGCAATATTTTCGTCTCGCCATTTTTGAATTTTGACCCATCTATTTTGGTCTCG 178
                      ************************************************************

consensus_9607#0      AATCCCGAAGAGCAGTTCATCTTTCCTGAAGGGGAGAAACGTCGAGGTCGCTTTGAGCGA 300
consensus_9607#1      AATCCCGAAGAGCAGTTCATCTTTCCTGAAGGGGAGAAACGTCGAGGTCGCTTTGAGCGA 238
                      ************************************************************

consensus_9607#0      TCGTTTTCCGAAATCGGAGCTATGGTTATTGGGGGTGCATCTGTTGGGGGGATCAAGGGA 360
consensus_9607#1      TCGTTTTCCGAAATCGGAGCTATGGTTATTGGGGGTGCATCTGTTGGGGGGATCAAGGGA 298
                      ************************************************************

consensus_9607#0      TTATACAGCGGTTTTAAAGATTCGGAAATAAAAAATCTTCCGACACTTGCTATTAGACGA 420
consensus_9607#1      TTATACAGCGGTTTTAAAGATTCGGAAATAAAAAATCTTCCGACACTTGCTATTAGACGA 358
                      ************************************************************

consensus_9607#0      ACTCAAATGCTGAATCATCTGACGAAATCCGGAGCAACACTTGCTCAGACTGCAGGTTCT 480
consensus_9607#1      ACTCAAATGCTGAATCATCTGACGAAATCCGGAGCAACACTTGCTCAGACTGCAGGTTCT 418
                      ************************************************************

consensus_9607#0      ATAGGGTTTATATACGCTGTGGCAGATTTCTTGATCTACAAATTACGTGGTAATGCAGAA 540
consensus_9607#1      ATAGGGTTTATATACGCTGTGGCAGATTTCTTGATCTACAAATTACGTGGTAATGCAGAA 478
                      ************************************************************

consensus_9607#0      GATGAGATAAATACAATGGCAGCAGCTACGACTACCGGCTTAGTGTATACCTCTCCAGGA 600
consensus_9607#1      GATGAGATAAATACAATGGCAGCAGCTACGACTACCGGCTTAGTGTATACCTCTCCAGGA 538
                      ************************************************************

consensus_9607#0      ATGTTTAAACCAGGTGGCTGGAAACGTTGCGGCTTTGGTGGGTTAGCTGGATTTGCTGTT 660
consensus_9607#1      A----------------------------------------------------------- 539
                      *                                                           

consensus_9607#0      GGTACGATCGCTGTTACTGTTACAAGCTGGTCTAGAATAAAACATATGCTTGGTGGATAA 720
consensus_9607#1      ------------------------------------------------------------
                                                                                  

consensus_9607#0      ACGACAATATTGTAATTTTAATTATGTACATTGACATTTTATCTAGTATCCGAAAAAATT 780
consensus_9607#1      ------------------------------------------------------------
                                                                                  

consensus_9607#0      ACTTTTTAAATATACCTTGAATTGTTAAAAAAAAAAAAAAAA 822
consensus_9607#1      ------------------------------------------