cluster # 9608

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Schistosoma mansoni
cluster # 9608 cluster # 9608 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9608#0 length = 806 sequences # 9

consensus_9608#1 length = 141 sequences # 1

consensusID : consensus_9608#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 806
fasta sequence

                              [AAATCCCGGCGGTTATTTTGTTCGTTGTACTCCTTTGTCCGGGCAATGAAATTCCAGTACAAAGAAGACCGTCCGTTTGAAAAACGCCTAGAAGAAGGGCAAAATATACGTAAAAAGTACCCTTCCAGCGTTCCAGTTATTGTTGAAAAATCACCTCGTGCACGTGTTGGCAATCTAGAGAAAAACAAATATCTAGTTCCTTCGGACCTAACTGTCGGACAATTTTACTTCCTGATTCGTAAAAAAATCCAATTAAATCCAGAAGAAGCGCTATTTTTCTTTGTTAAAGACATTATTCCTCCTACAAGCGCTACTATGGGTGCTCTCTATCAGGAACATCATGATCGTGATCTCTTCCTCTACATTGCATACAGTGATGAAAGTATATACGGATCAGTGGAAGATTGCACATCTTCATGAAAATTGAATATTGGTCACGGTTCTGTTTTCAAAAGCTTATTGAATCTGTGTTTCTTCCCACATCATTCTACCGATATACCTATTGTTTCCACACATACACAACACATAACCAGTCATTTCTGTCGATTTTTCCAGTCATATCTTTTTTCTTCTTTAAAACCTACACTACAGTGTTTTAATTATTCATCTAACGACACTAATAATTATGTGTGTTTCACTTTTTTTTCTTGTTATTTACTAATTAAGAGTTATTAAGTAAAGTTCGCATTTTGTGCAAAACAGTTATTGCGAATGACATTCATAATTTTCATTTTCAGTAATTTAACTGAAGACGAAATACATTTTGTAAAAGCGTAAAAAAAAGAAAAAAANACCATCTGNCCGCG]

[+] EMBL CD187412             [AAATCCCGGCGGTTATTTTGTTCGTTGTACTCCTTTGTCCGGGCAATGAAATTCCAGTACAAAGAAGACCGTCCGTTTGAAAAACGCCTAGAAGAAGGGCAAAATATACGTAAAAAGTACCCTTCCAGCGTTCCAGTTATTGTTGAAAAATCACCTCGTGCACGTGTTGGCAATCTAGAGAAAAACAAATATCTAGTTCCTTCGGACCTAACTGTCGGACAATTTTACTTCCTGATTCGTAAAAAAATCCAATTAAATCCAGAAGAAGCGCTATTTTTCTTTGTTAAAGACATTATTCCTCCTACAAGCGCTACTATGGGTGCTCTCTATCAGGAACATCATGATCGTGATCTCTTCCTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AI976824             [                        TTGTACTCCTTTGTCCGGGCAATGAAATTCCAGTACAAAGAAGACCGTCCGTTTGAAAAACGCCTAGAAGAAGGGCAAAATATACGTAAAAAGTACCCTTCCAGCGTTCCAGCTATTGTTGAAAAATCACCTCCTGCACGTGTTGGCAATCTAGAGAAAAACAAATATCTAGTTGCTTCGGACCTAACTGTCGGACAATTTTACTTCCTGATTCGTAAAATAATCCAATTAAATCCAGAAGAAGCGCTATTTTTCTTTGTTAAAGACATTATTCCTCCTACAAGCGCTACTATGGGTGCTCTCTATCAGGAACATCATGATCGTGATCTCTGCCTCTACATTGCATACAGTGATGAAAGTATATACTGATCAGTGGAAGATTGCTCATCTTCATGAGAATTGAATA                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD082286             [                           TACTCCTTTGTTCGGGCAATGAAATTCCTGTACAAAGAAGACCGACCGTTTGAAAAACGCCTAGAAGAAGGGCAAAATATACGTAAAAAGTACCCTTCCAGCGTTCCAGTTATTGTTGAAAAATCACCTCGTGCACGTGTTGGCAATCTAGAGAAAAACAAATATCTAGTTCCTTCGGACCTAACTGTCGGACAATTTTACTTCCTGATTCGTAAAAAAATCCAATTAAATCCAGAAGAAGCGCTATTTTTCTTTGTTAAAGACATTATTCCTCCTACAAGCGCTACTATGGGTGCTCTCTATCAGGAACATCATGATCGTGATCTCTTCCTCTACATTGCATACAGTGATGAAAGTATATACGGATCAGTGGAAGATTGCACATCTTCATGAAAATTGAATATTGGTCACGGTTCTGTTTTCAAAAGCTTATTGAATCTGTGTTTCTTCCCACATCATTCTACCGATATACCTATTGTTTCCACACATACACAACACATAACCAGTCATTTCTGTCGATTTTTCCAGTCATATCTTTTTTCTTCTTTAAAACCTACACTACAGTGTTTTAATTATTCATCTAACGACACTAATAATTATGTGTGTTTCACTTTTTTTTCTTGTTATTTACTAATTAAGAGTTATTAAGTAAAGTTCGCATTTTGTGC AAACAGTTATTGCGAATGACATTCATAATTNTCATTNTCAGTAATTTAACTGAAGACG AATACATTTT                                         ]
[+] EMBL CD082596             [                            ACTCCTTTGTCCGGGCAATGAAATTCCAGTACAAAGAAGACCGTCCGTTTGAAAAACGCCTAGAAGAAGGGCAAAATATACGTAAAAAGTACCCTTCCAGCGTTCCAGTTATTGTTGAAAAATCACCTCGTGCACGTGTTGGCAATCTAGAGAAAAACAAATATCTAGTTCCTTCGGACCTAACTGTCGGACAATTTTACTTCCTGATTCGTAAAAAAATCCAATTAAATCCAGAAGAAGCGCTATTTTTCTTTGTTAAAGACATTATTCCTCCTACAAGCGCTACTATGGGTGCTCTCTATCAGGAACATCATGATCGTGATCTCTTCCTCTACATTGCATACAGTGATGAAAGTATATACGGATCAGTGGAAGATTGCACATCTTCATGAAAATTGAATATTGGTCACGGTTCTGTTTTCAAAAGCTTATTGAATCTGTGTTTCTTCCCACATCATTCTACCGATATACCTATTGTTTCCACACATACACAACACATAACCAGTCATTTCTGTCGATTTTTCCAGTCATATCTTTTTTCTTCTTTAAAACCTAC                                                                                                                                                                                                                              ]
[+] EMBL AI740386             [                                                                                               AGGGCAAAATATACGTAAAAAGTACCCTTCCAGCGTTCCAGTTATTGTTGAAAAATCACCTCGTGCACGTGTTGGCAATCTAGAGAAAAACAAATATCTAGTTCCTTCGGACCTAACTGTCGGACAATTTTACTTCCTGATTCGTAAAAAAATCCAATTAAATCCAGAAGAAGCGCTATTTTTCTTTGTTAAAGACATTATTCCTCCTACAAGCGCTACTATGGGTGCTCTCTATCAGGAACATCATGATCGTGATCTCTTCCTCTACATTGCATACAGTGATGAAAGTATATACGGATCAGTGGAAGATTGCACATCTTCATGAAAATTGAATATTGGTCACGGTTCTGTTTTCAAAAGCTTATTGAATCTGTGTTTCCTTCCAAAT                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD075892             [                                                                                                                                                                                 GAGAAAAACAAATATCTAGTTCCTTCGGACCTAACTGTCGGACAATTTTACTTCCTGATTCGTAAAAAAATCCAATTAAATCCAGAAGAAGCGCTATTTTTCTTTGTTAAAGACATTATTCCTCCTACAAGCGCTACTATGGGTGCTCTCTATCAGGAACATCATGATCGTGATCTCTTCCTCTACATTGCATACAGTGATGAAAGTATATACGGATCAGTGGAAGATTGCACATCTTCATGAAAATTGAATATTGGTCACGGTTCTGTTTTCAAAAGCTTATTGAATCTGTGTTTCTTCCCACATCATTCTACCGATATACCTATTGTTTCCACACATACACAACACATAACCAGTCATTTCTGTCGATTTTTCCAGTCATATCTTTTTTCTTCTTTAAAACCTACACTACAGTGTTTTAATTATTCATCTAACGACACTAATAATTATGTGTGTTTCACTTTTTTTTCTTGTTATTTACTAATTAAGAGTTATTAAGTAAAGTTCGCATTTTGTGCAAAACAGTTATTGCGAATGACATTCATAATTTTCATTTTCAGTAATTTAACTGAAGACGAAATACATTTTGTAAAAGCGTAAAAAAAAGAAAAAAANACCATCTGNCCGCG]
[-] EMBL CD077211             [                                                                                                                                                                                                                                                                                                                        ACTATGGGTGCTCTCTATCAGGAACATCATGATCGTGATCTCTTCCTCTACATTGCATACAGTGATGAAAGTATATACGGATCAGTGGAAGATTGCACATCTTCATGAAAATTGAATATTGGTCACGGTTCTGTTTTCAAAAGCTTATTGAATCTGTGTTTCTTCCCACATCATTCTACCGATATACCTATTGTTTCCCCACATACCCAACACATAACCAGTCATTTCTGTCGATTTTTCCAGTCATATCTTTTTTCTTCTTTAAAACCTACACTACAGTGTTTTAATTATTCATCTAACGACACTAATAATTATGTGTGTTTCACTTTTTTTTCTTGTTATTTACTAATTAAGAGTTATTAAGTAAAGTTCGCATTTTGTGCAAAACAGTTATTGCGAATGACATTC                                                                                      ]
[-] EMBL AW017250             [                                                                                                                                                                                                                                                                                                                                                        TCGTGATCTCTTCCTNTACATTGCATACAGTGATGAAAGTATATACGGATCAGTGGAAGATTGCACATCTTCATGAAAATTGAATATTGGTCACGGTTCTGTTTTCAAAAGCTTATTGAATCTGTGTTTCTTCCCACATCATTCTACCGATATACCTATTGTTTCCACACATACACAACACATAACCAGTCATTTCTGTCGATTTTTCCAGTCATATCTTTTTTCTTCTTTAAAACCTACACTACAGTGTTTTAATTATTCATCTAACGACACTAATAATTATGTGTGTTTCACTTTTTTTTCTTGTTATTTACTAATTAAGAGTTATTAAGTAAAGTTCGCATTTTGTGCAAAACAGTTATTGCGAATGACATTCATAATTTTCATTTTCAGTAATTTAACTGAAGACGAAATACATTTTG                                        ]
[-] EMBL AA999573             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TCTTCCCACATCATTCTACCGATATACCTATTGTTCCCACACATACACAACACATAACCAGTCATATCTGTCGATTTTCCCAGTCATATCTTTTTTCTTCTTTAAAACCTACACTACAGTGTTTTAATTATTCATCTAACGACACTAATAATTATGTGTGTTTCACTTTTTTTTCTTGTTATTTACTAATTAAGAGTTATTAAGTAAAGTTCGCATTTTGTGCAAAACAGTTATTGCGAATGACATTCATAATTTTCATTTTCAGTAATTTAACTGAAGACGAAATACATTTTGT                                       ]




>consensus_9608#0
AAATCCCGGCGGTTATTTTGTTCGTTGTACTCCTTTGTCCGGGCAATGAAATTCCAGTAC
AAAGAAGACCGTCCGTTTGAAAAACGCCTAGAAGAAGGGCAAAATATACGTAAAAAGTAC
CCTTCCAGCGTTCCAGTTATTGTTGAAAAATCACCTCGTGCACGTGTTGGCAATCTAGAG
AAAAACAAATATCTAGTTCCTTCGGACCTAACTGTCGGACAATTTTACTTCCTGATTCGT
AAAAAAATCCAATTAAATCCAGAAGAAGCGCTATTTTTCTTTGTTAAAGACATTATTCCT
CCTACAAGCGCTACTATGGGTGCTCTCTATCAGGAACATCATGATCGTGATCTCTTCCTC
TACATTGCATACAGTGATGAAAGTATATACGGATCAGTGGAAGATTGCACATCTTCATGA
AAATTGAATATTGGTCACGGTTCTGTTTTCAAAAGCTTATTGAATCTGTGTTTCTTCCCA
CATCATTCTACCGATATACCTATTGTTTCCACACATACACAACACATAACCAGTCATTTC
TGTCGATTTTTCCAGTCATATCTTTTTTCTTCTTTAAAACCTACACTACAGTGTTTTAAT
TATTCATCTAACGACACTAATAATTATGTGTGTTTCACTTTTTTTTCTTGTTATTTACTA
ATTAAGAGTTATTAAGTAAAGTTCGCATTTTGTGCAAAACAGTTATTGCGAATGACATTC
ATAATTTTCATTTTCAGTAATTTAACTGAAGACGAAATACATTTTGTAAAAGCGTAAAAA
AAAGAAAAAAANACCATCTGNCCGCG

consensusID : consensus_9608#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 141
fasta sequence

                              [AGTACAAAGAAGACCGTCCTCCGTTTGAAAAACGCCTAGAAGAAGGGCAAAATATACGTAAAAATTTCCCTTCCTTCTTTCCAGTTATTGTTGAAATTTCACCTTGGGCACGTGTGGGCAATCTAGAGAAAAACGAATATC]

[+] EMBL SMAA14089            [AGTACAAAGAAGACCGTCCTCCGTTTGAAAAACGCCTAGAAGAAGGGCAAAATATACGTAAAAATTTCCCTTCCTTCTTTCCAGTTATTGTTGAAATTTCACCTTGGGCACGTGTGGGCAATCTAGAGAAAAACGAATATC]




>consensus_9608#1
AGTACAAAGAAGACCGTCCTCCGTTTGAAAAACGCCTAGAAGAAGGGCAAAATATACGTA
AAAATTTCCCTTCCTTCTTTCCAGTTATTGTTGAAATTTCACCTTGGGCACGTGTGGGCA
ATCTAGAGAAAAACGAATATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9608#0      AAATCCCGGCGGTTATTTTGTTCGTTGTACTCCTTTGTCCGGGCAATGAAATTCCAGTAC 60
consensus_9608#1      -------------------------------------------------------AGTAC 5
                                                                             *****

consensus_9608#0      AAAGAAGACCGTCC---GTTTGAAAAACGCCTAGAAGAAGGGCAAAATATACGTAAAAAG 117
consensus_9608#1      AAAGAAGACCGTCCTCCGTTTGAAAAACGCCTAGAAGAAGGGCAAAATATACGTAAAAAT 65
                      **************   ****************************************** 

consensus_9608#0      TACCCTTCCAGCGTTCCAGTTATTGTTGAAAAATCACCTCGTGCACGTGTTGGCAATCTA 177
consensus_9608#1      TTCCCTTCCTTCTTTCCAGTTATTGTTGAAATTTCACCTTGGGCACGTGTGGGCAATCTA 125
                      * *******  * ******************  ****** * ******** *********

consensus_9608#0      GAGAAAAACAAATATCTAGTTCCTTCGGACCTAACTGTCGGACAATTTTACTTCCTGATT 237
consensus_9608#1      GAGAAAAACGAATATC-------------------------------------------- 141
                      ********* ******                                            

consensus_9608#0      CGTAAAAAAATCCAATTAAATCCAGAAGAAGCGCTATTTTTCTTTGTTAAAGACATTATT 297
consensus_9608#1      ------------------------------------------------------------
                                                                                  

consensus_9608#0      CCTCCTACAAGCGCTACTATGGGTGCTCTCTATCAGGAACATCATGATCGTGATCTCTTC 357
consensus_9608#1      ------------------------------------------------------------
                                                                                  

consensus_9608#0      CTCTACATTGCATACAGTGATGAAAGTATATACGGATCAGTGGAAGATTGCACATCTTCA 417
consensus_9608#1      ------------------------------------------------------------
                                                                                  

consensus_9608#0      TGAAAATTGAATATTGGTCACGGTTCTGTTTTCAAAAGCTTATTGAATCTGTGTTTCTTC 477
consensus_9608#1      ------------------------------------------------------------
                                                                                  

consensus_9608#0      CCACATCATTCTACCGATATACCTATTGTTTCCACACATACACAACACATAACCAGTCAT 537
consensus_9608#1      ------------------------------------------------------------
                                                                                  

consensus_9608#0      TTCTGTCGATTTTTCCAGTCATATCTTTTTTCTTCTTTAAAACCTACACTACAGTGTTTT 597
consensus_9608#1      ------------------------------------------------------------
                                                                                  

consensus_9608#0      AATTATTCATCTAACGACACTAATAATTATGTGTGTTTCACTTTTTTTTCTTGTTATTTA 657
consensus_9608#1      ------------------------------------------------------------
                                                                                  

consensus_9608#0      CTAATTAAGAGTTATTAAGTAAAGTTCGCATTTTGTGCAAAACAGTTATTGCGAATGACA 717
consensus_9608#1      ------------------------------------------------------------
                                                                                  

consensus_9608#0      TTCATAATTTTCATTTTCAGTAATTTAACTGAAGACGAAATACATTTTGTAAAAGCGTAA 777
consensus_9608#1      ------------------------------------------------------------
                                                                                  

consensus_9608#0      AAAAAAGAAAAAAANACCATCTGNCCGCG 806
consensus_9608#1      -----------------------------