These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9608#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 806 fasta sequence [AAATCCCGGCGGTTATTTTGTTCGTTGTACTCCTTTGTCCGGGCAATGAAATTCCAGTACAAAGAAGACCGTCCGTTTGAAAAACGCCTAGAAGAAGGGCAAAATATACGTAAAAAGTACCCTTCCAGCGTTCCAGTTATTGTTGAAAAATCACCTCGTGCACGTGTTGGCAATCTAGAGAAAAACAAATATCTAGTTCCTTCGGACCTAACTGTCGGACAATTTTACTTCCTGATTCGTAAAAAAATCCAATTAAATCCAGAAGAAGCGCTATTTTTCTTTGTTAAAGACATTATTCCTCCTACAAGCGCTACTATGGGTGCTCTCTATCAGGAACATCATGATCGTGATCTCTTCCTCTACATTGCATACAGTGATGAAAGTATATACGGATCAGTGGAAGATTGCACATCTTCATGAAAATTGAATATTGGTCACGGTTCTGTTTTCAAAAGCTTATTGAATCTGTGTTTCTTCCCACATCATTCTACCGATATACCTATTGTTTCCACACATACACAACACATAACCAGTCATTTCTGTCGATTTTTCCAGTCATATCTTTTTTCTTCTTTAAAACCTACACTACAGTGTTTTAATTATTCATCTAACGACACTAATAATTATGTGTGTTTCACTTTTTTTTCTTGTTATTTACTAATTAAGAGTTATTAAGTAAAGTTCGCATTTTGTGCAAAACAGTTATTGCGAATGACATTCATAATTTTCATTTTCAGTAATTTAACTGAAGACGAAATACATTTTGTAAAAGCGTAAAAAAAAGAAAAAAANACCATCTGNCCGCG] [+] EMBL CD187412 [AAATCCCGGCGGTTATTTTGTTCGTTGTACTCCTTTGTCCGGGCAATGAAATTCCAGTACAAAGAAGACCGTCCGTTTGAAAAACGCCTAGAAGAAGGGCAAAATATACGTAAAAAGTACCCTTCCAGCGTTCCAGTTATTGTTGAAAAATCACCTCGTGCACGTGTTGGCAATCTAGAGAAAAACAAATATCTAGTTCCTTCGGACCTAACTGTCGGACAATTTTACTTCCTGATTCGTAAAAAAATCCAATTAAATCCAGAAGAAGCGCTATTTTTCTTTGTTAAAGACATTATTCCTCCTACAAGCGCTACTATGGGTGCTCTCTATCAGGAACATCATGATCGTGATCTCTTCCTCT ] [+] EMBL AI976824 [ TTGTACTCCTTTGTCCGGGCAATGAAATTCCAGTACAAAGAAGACCGTCCGTTTGAAAAACGCCTAGAAGAAGGGCAAAATATACGTAAAAAGTACCCTTCCAGCGTTCCAGCTATTGTTGAAAAATCACCTCCTGCACGTGTTGGCAATCTAGAGAAAAACAAATATCTAGTTGCTTCGGACCTAACTGTCGGACAATTTTACTTCCTGATTCGTAAAATAATCCAATTAAATCCAGAAGAAGCGCTATTTTTCTTTGTTAAAGACATTATTCCTCCTACAAGCGCTACTATGGGTGCTCTCTATCAGGAACATCATGATCGTGATCTCTGCCTCTACATTGCATACAGTGATGAAAGTATATACTGATCAGTGGAAGATTGCTCATCTTCATGAGAATTGAATA ] [+] EMBL CD082286 [ TACTCCTTTGTTCGGGCAATGAAATTCCTGTACAAAGAAGACCGACCGTTTGAAAAACGCCTAGAAGAAGGGCAAAATATACGTAAAAAGTACCCTTCCAGCGTTCCAGTTATTGTTGAAAAATCACCTCGTGCACGTGTTGGCAATCTAGAGAAAAACAAATATCTAGTTCCTTCGGACCTAACTGTCGGACAATTTTACTTCCTGATTCGTAAAAAAATCCAATTAAATCCAGAAGAAGCGCTATTTTTCTTTGTTAAAGACATTATTCCTCCTACAAGCGCTACTATGGGTGCTCTCTATCAGGAACATCATGATCGTGATCTCTTCCTCTACATTGCATACAGTGATGAAAGTATATACGGATCAGTGGAAGATTGCACATCTTCATGAAAATTGAATATTGGTCACGGTTCTGTTTTCAAAAGCTTATTGAATCTGTGTTTCTTCCCACATCATTCTACCGATATACCTATTGTTTCCACACATACACAACACATAACCAGTCATTTCTGTCGATTTTTCCAGTCATATCTTTTTTCTTCTTTAAAACCTACACTACAGTGTTTTAATTATTCATCTAACGACACTAATAATTATGTGTGTTTCACTTTTTTTTCTTGTTATTTACTAATTAAGAGTTATTAAGTAAAGTTCGCATTTTGTGC AAACAGTTATTGCGAATGACATTCATAATTNTCATTNTCAGTAATTTAACTGAAGACG AATACATTTT ] [+] EMBL CD082596 [ ACTCCTTTGTCCGGGCAATGAAATTCCAGTACAAAGAAGACCGTCCGTTTGAAAAACGCCTAGAAGAAGGGCAAAATATACGTAAAAAGTACCCTTCCAGCGTTCCAGTTATTGTTGAAAAATCACCTCGTGCACGTGTTGGCAATCTAGAGAAAAACAAATATCTAGTTCCTTCGGACCTAACTGTCGGACAATTTTACTTCCTGATTCGTAAAAAAATCCAATTAAATCCAGAAGAAGCGCTATTTTTCTTTGTTAAAGACATTATTCCTCCTACAAGCGCTACTATGGGTGCTCTCTATCAGGAACATCATGATCGTGATCTCTTCCTCTACATTGCATACAGTGATGAAAGTATATACGGATCAGTGGAAGATTGCACATCTTCATGAAAATTGAATATTGGTCACGGTTCTGTTTTCAAAAGCTTATTGAATCTGTGTTTCTTCCCACATCATTCTACCGATATACCTATTGTTTCCACACATACACAACACATAACCAGTCATTTCTGTCGATTTTTCCAGTCATATCTTTTTTCTTCTTTAAAACCTAC ] [+] EMBL AI740386 [ AGGGCAAAATATACGTAAAAAGTACCCTTCCAGCGTTCCAGTTATTGTTGAAAAATCACCTCGTGCACGTGTTGGCAATCTAGAGAAAAACAAATATCTAGTTCCTTCGGACCTAACTGTCGGACAATTTTACTTCCTGATTCGTAAAAAAATCCAATTAAATCCAGAAGAAGCGCTATTTTTCTTTGTTAAAGACATTATTCCTCCTACAAGCGCTACTATGGGTGCTCTCTATCAGGAACATCATGATCGTGATCTCTTCCTCTACATTGCATACAGTGATGAAAGTATATACGGATCAGTGGAAGATTGCACATCTTCATGAAAATTGAATATTGGTCACGGTTCTGTTTTCAAAAGCTTATTGAATCTGTGTTTCCTTCCAAAT ] [-] EMBL CD075892 [ GAGAAAAACAAATATCTAGTTCCTTCGGACCTAACTGTCGGACAATTTTACTTCCTGATTCGTAAAAAAATCCAATTAAATCCAGAAGAAGCGCTATTTTTCTTTGTTAAAGACATTATTCCTCCTACAAGCGCTACTATGGGTGCTCTCTATCAGGAACATCATGATCGTGATCTCTTCCTCTACATTGCATACAGTGATGAAAGTATATACGGATCAGTGGAAGATTGCACATCTTCATGAAAATTGAATATTGGTCACGGTTCTGTTTTCAAAAGCTTATTGAATCTGTGTTTCTTCCCACATCATTCTACCGATATACCTATTGTTTCCACACATACACAACACATAACCAGTCATTTCTGTCGATTTTTCCAGTCATATCTTTTTTCTTCTTTAAAACCTACACTACAGTGTTTTAATTATTCATCTAACGACACTAATAATTATGTGTGTTTCACTTTTTTTTCTTGTTATTTACTAATTAAGAGTTATTAAGTAAAGTTCGCATTTTGTGCAAAACAGTTATTGCGAATGACATTCATAATTTTCATTTTCAGTAATTTAACTGAAGACGAAATACATTTTGTAAAAGCGTAAAAAAAAGAAAAAAANACCATCTGNCCGCG] [-] EMBL CD077211 [ ACTATGGGTGCTCTCTATCAGGAACATCATGATCGTGATCTCTTCCTCTACATTGCATACAGTGATGAAAGTATATACGGATCAGTGGAAGATTGCACATCTTCATGAAAATTGAATATTGGTCACGGTTCTGTTTTCAAAAGCTTATTGAATCTGTGTTTCTTCCCACATCATTCTACCGATATACCTATTGTTTCCCCACATACCCAACACATAACCAGTCATTTCTGTCGATTTTTCCAGTCATATCTTTTTTCTTCTTTAAAACCTACACTACAGTGTTTTAATTATTCATCTAACGACACTAATAATTATGTGTGTTTCACTTTTTTTTCTTGTTATTTACTAATTAAGAGTTATTAAGTAAAGTTCGCATTTTGTGCAAAACAGTTATTGCGAATGACATTC ] [-] EMBL AW017250 [ TCGTGATCTCTTCCTNTACATTGCATACAGTGATGAAAGTATATACGGATCAGTGGAAGATTGCACATCTTCATGAAAATTGAATATTGGTCACGGTTCTGTTTTCAAAAGCTTATTGAATCTGTGTTTCTTCCCACATCATTCTACCGATATACCTATTGTTTCCACACATACACAACACATAACCAGTCATTTCTGTCGATTTTTCCAGTCATATCTTTTTTCTTCTTTAAAACCTACACTACAGTGTTTTAATTATTCATCTAACGACACTAATAATTATGTGTGTTTCACTTTTTTTTCTTGTTATTTACTAATTAAGAGTTATTAAGTAAAGTTCGCATTTTGTGCAAAACAGTTATTGCGAATGACATTCATAATTTTCATTTTCAGTAATTTAACTGAAGACGAAATACATTTTG ] [-] EMBL AA999573 [ TCTTCCCACATCATTCTACCGATATACCTATTGTTCCCACACATACACAACACATAACCAGTCATATCTGTCGATTTTCCCAGTCATATCTTTTTTCTTCTTTAAAACCTACACTACAGTGTTTTAATTATTCATCTAACGACACTAATAATTATGTGTGTTTCACTTTTTTTTCTTGTTATTTACTAATTAAGAGTTATTAAGTAAAGTTCGCATTTTGTGCAAAACAGTTATTGCGAATGACATTCATAATTTTCATTTTCAGTAATTTAACTGAAGACGAAATACATTTTGT ] consensusID : consensus_9608#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 141 fasta sequence [AGTACAAAGAAGACCGTCCTCCGTTTGAAAAACGCCTAGAAGAAGGGCAAAATATACGTAAAAATTTCCCTTCCTTCTTTCCAGTTATTGTTGAAATTTCACCTTGGGCACGTGTGGGCAATCTAGAGAAAAACGAATATC] [+] EMBL SMAA14089 [AGTACAAAGAAGACCGTCCTCCGTTTGAAAAACGCCTAGAAGAAGGGCAAAATATACGTAAAAATTTCCCTTCCTTCTTTCCAGTTATTGTTGAAATTTCACCTTGGGCACGTGTGGGCAATCTAGAGAAAAACGAATATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9608#0 AAATCCCGGCGGTTATTTTGTTCGTTGTACTCCTTTGTCCGGGCAATGAAATTCCAGTAC 60 consensus_9608#1 -------------------------------------------------------AGTAC 5 ***** consensus_9608#0 AAAGAAGACCGTCC---GTTTGAAAAACGCCTAGAAGAAGGGCAAAATATACGTAAAAAG 117 consensus_9608#1 AAAGAAGACCGTCCTCCGTTTGAAAAACGCCTAGAAGAAGGGCAAAATATACGTAAAAAT 65 ************** ****************************************** consensus_9608#0 TACCCTTCCAGCGTTCCAGTTATTGTTGAAAAATCACCTCGTGCACGTGTTGGCAATCTA 177 consensus_9608#1 TTCCCTTCCTTCTTTCCAGTTATTGTTGAAATTTCACCTTGGGCACGTGTGGGCAATCTA 125 * ******* * ****************** ****** * ******** ********* consensus_9608#0 GAGAAAAACAAATATCTAGTTCCTTCGGACCTAACTGTCGGACAATTTTACTTCCTGATT 237 consensus_9608#1 GAGAAAAACGAATATC-------------------------------------------- 141 ********* ****** consensus_9608#0 CGTAAAAAAATCCAATTAAATCCAGAAGAAGCGCTATTTTTCTTTGTTAAAGACATTATT 297 consensus_9608#1 ------------------------------------------------------------ consensus_9608#0 CCTCCTACAAGCGCTACTATGGGTGCTCTCTATCAGGAACATCATGATCGTGATCTCTTC 357 consensus_9608#1 ------------------------------------------------------------ consensus_9608#0 CTCTACATTGCATACAGTGATGAAAGTATATACGGATCAGTGGAAGATTGCACATCTTCA 417 consensus_9608#1 ------------------------------------------------------------ consensus_9608#0 TGAAAATTGAATATTGGTCACGGTTCTGTTTTCAAAAGCTTATTGAATCTGTGTTTCTTC 477 consensus_9608#1 ------------------------------------------------------------ consensus_9608#0 CCACATCATTCTACCGATATACCTATTGTTTCCACACATACACAACACATAACCAGTCAT 537 consensus_9608#1 ------------------------------------------------------------ consensus_9608#0 TTCTGTCGATTTTTCCAGTCATATCTTTTTTCTTCTTTAAAACCTACACTACAGTGTTTT 597 consensus_9608#1 ------------------------------------------------------------ consensus_9608#0 AATTATTCATCTAACGACACTAATAATTATGTGTGTTTCACTTTTTTTTCTTGTTATTTA 657 consensus_9608#1 ------------------------------------------------------------ consensus_9608#0 CTAATTAAGAGTTATTAAGTAAAGTTCGCATTTTGTGCAAAACAGTTATTGCGAATGACA 717 consensus_9608#1 ------------------------------------------------------------ consensus_9608#0 TTCATAATTTTCATTTTCAGTAATTTAACTGAAGACGAAATACATTTTGTAAAAGCGTAA 777 consensus_9608#1 ------------------------------------------------------------ consensus_9608#0 AAAAAAGAAAAAAANACCATCTGNCCGCG 806 consensus_9608#1 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||