These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9609#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1034 fasta sequence [CCTCGAGGCCAAAAATTCGGCACGAGGAGCATCTGCATTATCAGGGTCATTAGCAATCATATCATCTTTGTTAGATAGTTGTGTTGATTTGGCTTCCGGTGGAATCATGTGGTTCGCTGCTCGTCAAATGCGTAAAAGGAAGCCATACAAATACCCAGAAGGGAGAACAAGGCTTGAACCATTAGCAGTAATTGTACTCTCTGTATTTATGGGTAGCATTTCTATACAACTTCTAGCTGAATCTATACAAGCCATGGTTCGTATGTCACAAAATAATCAAGAAGCACCGAACGTTAATGATTTAGCTTTGGGAATAATGGCATCCGTAATTGTGACTAAACTAATCCTATGGATTGTTTGTTTTAAATATGGTGGTGGAATGGCTATCGATGCTCTTAAAACCGATCAACGTAATGATATACTTACAAATGCTGCATCAATTTTATTTAGTGGTCTTGCTGGACGTTTACCCCCTTTACTAGGACAAAAACAATACGAAAATCTTAAGTATTTAGATCCCGTTGGAGCTATACTTATTGGTTCTTATATTTTGTATTCTTGGTATCAACTTGGTGCTGAACAGATACGTAATCTAGCTGGTCATACAGCTAGTCCAAGCTTTATTCAAAAGATTGCATTCGTTTGTCTTAATTATCATCCGTTGATTGAACAATTGGATACCATTAGAGCATTTCATTTTGGTGAAAACTTCTTGGTTGAAGTTGATATTGTATTACCTAAAGAAATGTGTCTTAAAGAAGCTCATGATATTGGTGAAGGATTACAAAAGAAATTAGAAAAATTAGAAACAGTTGAACGAGCTTTTGTACATTTAGATTATGAATTTTCACATCGTCCAGAAACTGAACATAAAATAGTTTAAAAAGAAGAAGAAAAAGAAATTTCATTGTATCCTATTTTTTTTAAAAACAGTTTAAAGTGTACACATACATATGACATGTATCTAGAATAATTTGCTAGATTTCTTTCTTTAAGAATTTCATTTCAGAGACTTTCATATGCTATTCCATTTT] [+] EMBL CD082482 [CCTCGAGGCCAAAAATTCGGCACGAGGAGCATCTGCATTATCAGGGTCATTAGCAATCATATCATCTTTGTTAGATAGTTGTGTTGATTTGGCTTCCGGTGGAATCATGTGGTTCGCTGCTCGTCAAATGCGTAAAAGGAAGCCATACAAATACCCAGAAGGGAGAACAAGGCTTGAACCATTAGCAGTAATTGTACTCTCTGTATTTATGGGTAGCATTTCTATACAACTTCTAGCTGAATCTATACAAGCCATGGTTCGTATGTCACAAAATAATCAAGAAGCACCGAACGTTAATGATTTAGCTTTGGGAATAATGGCATCCGTAATTGTGACTAAACTAATCCTATGGATTGTTTGTTTTAAATATGGTGGTGGAATGGCTATCGATGCTCTTAAAACCGATCAACGTAATGATATACTTACAAATGCTGCATCAATTTTATTTAGTGGTCTTGCTGGACGTTTACCCCCTTTACTAGGACAAAAACAATACGAAAATCTTAAGTATTTAGATCCCGTTGGAGCTATACTTATTGGTTCTTATATTTTGTATTCTTGGTATCAACTTGGTGCTGAACAGATACGTAATCTAGCTGGTCATACAGCTAGTCCAAGCTTTATTCANAAGATTGCATTCG ] [-] EMBL CD076080 [ CATGGTTCGTATGTCACAAAATAATCAAGAAGCACCGAACGTTAATGATTTAGCTTTGGGAATAATGGCATCCGTAATTGTGACTAAACTAATCCTATGGATTGTTTGTTTTAAATATGGTGGTGGAATGGCTATCGATGCTCTTAAAACCGATCAACGTAATGATATACTTACAAATGCTGCATCAATTTTATTTAGTGGTCTTGCTGGACGTTTACCCCCTTTACTAGGACAAAAACAATACGAAAATCTTAAGTATTTAGATCCCGTTGGAGCTATACTTATTGGTTCTTATATTTTGTATTCTTGGTATCAACTTGGTGCTGAACAGATACGTAATCTAGCTGGTCATACAGCTAGTCCAAGCTTTATTCAAAAGATTGCATTCGTTTGTCTTAATTATCATCCGTTGATTGAACAATTGGATACCATTAGAGCATTTCATTTTGGTGAAAACTTCTTGGTTGAAGTTGATATTGTATTACCTAAAGAAATGTGTCTTAAAGAAGCTCATGATATTGGTGAAGGATTACAAAAGAAATTAGAAAAATTAGAAACAGTTGAACGAGCTTTTGTACATTTAGATTATGAATTTTCACATCGTCCAGAAACTGAACATA ] [+] EMBL CD168369 [ TAATGATATACTTACAAATGCTGCATCAATTTTATTTAGTGGTCTTGCTGGACGTTTACCCCCTTTACTAGGACAAAAACAATACGAAAATCTTAAGTATTTAGATCCCGTTGGAGCTATACTTATTGGTTCTTATATTTTGTATTCTTGGTATCAACTTGGTGCTGAACAGATACGTAATCTAGCTGGTCATACAGCTAGTCCAAGCTTTATTCAAAGGATTGCATTCGTTTGTCTTAATTATCATCCGTTGATTGAACAATTGGATACCATTAGAGCATTTCATTTTGGTGAAAACTTCTTGGTTGAAGTTGATATTGTATTACCTAAAGAAATGTGTCTTAAAGAAGCTCATGATATTGGTGAAGGATTACAAAAGAAATTAGAAAAATTAGAAACAGTTGAACGAGCTTTTGTACATTTAGATTATGAATTTTCACATCGTCCAGAAACTGAACATAAAATAGTTTAAAAAGAAGGAGgggg ] [+] EMBL CD168355 [ TAATGATATACTTACAAATGCTGCATCAATTTTATTTAGTGGTCTTGCTGGACGTTTACCCCCTTTACTAGGACAAAAACAATACGAAAATCTTAAGTATTTAGATCCCGTTGGAGCTATACTTATTGGTTCTTATATTTTGTATTCTTGGTATCAACTTGGTGCTGAACAGATACGTAATCTAGCTGGTCATACAGCTAGTCCAAGCTTTATTCAAAGGATTGCATTCGTTTGTCTTAATTATCATCCGTTGATTGAACAATTGGATACCATTAGAGCATTTCATTTTGGTGAAAACTTCTTGGTTGAAGTTGATATTGTATTACCTAAAGAAATGTGTCTTAAAGAAGCTCATGATATTGGTGAAGGATTACAAAAGAAATTAGAAAAATTAGAAACAGTTGAACGAGCTTTTGTACATTTAGATTATGAATTTTCACATCGTCCAGAAACTGAACATAAAATAGTTTAAAAAGA AAGAAA ] [+] EMBL CD168372 [ ggATGATATACTTACAAATGCTGCATCAATTTTATTTAGTGGTCTTGCTGGACGTTTACCCCCTTTACTAGGACAAAAACAATACGAAAATCTTAAGTATTTACATCCCGTTGGAGCTATACTTATTGGTTCTTATATTTTGTATTCTTGGTATCAACTTGGTGCTGAACAGATACGTAATCTAGCTGGTCATACAGCTAGTCCAAGCTTTAT ] [-] EMBL CD183994 [ CAAATGCTGCATCAATTTTATTTAGTGGTCTTGCTGGACGTTTACCCCCTTTACTAGGACAAAAACAATACGAAAATCTTAAGTATTTAGATCCCGTTGGAGCTATACTTATTGGTTCTTATATTTTGTATTCTTGGTATCAACTTGGTGCTGAACAGATACGTAATCTAGCTGGTCATACAGCTAGTCCAAGCTTTATTCAAAAGATTGCATTCGTTTGTCTTAATTATCATCCGTTGATTGAACAATTGGATACCATTAGAGCATTTCATTTTGGTGAAAACTTCTTGGTTGAAGTTGATATTGTATTACCTAAAGAAATGTGTCTTAAAGAAGCTCATGATATTGGTGAAGGATTACAAAAGAAATTAGAAAAATTAGAAACAGTTGAACGAGCTTTTGTACATTTAGATTATGAATTTTCACATCGTCCAGAAACTGAACATAAAATAGTTTAAAAAGAAGAAGAAAAAGAAATTTCATTGTATCCTATTTTTTTTAAAAACAGTTTAAAGTGTACACATACATATGACATGTATCTAGAATAATTTGCTAGATTTCTTTCTTTAAGAATTTCATTTCAGAGACTTTCATATGCTATTCCATTTT] [-] EMBL CD184070 [ GGACGTTTACCCCCTTTACTAGGACAAAAACAATACGAAAATCTTAAGTATTTAGATCCCGTTGGAGCTATACTTATTGGTTCTTATATTTTGTATTCTTGGTATCAACTTGGTGCTGAACAGATACGTAATCTAGCTGGTCATACAGCTAGTCCAAGCTTTATTCAAAAGATTGCATTCGTTTGTCTTAATTATCATCCGTTGATTGAACAATTGGATACCATTAGAGCATTTCATTTTGGTGAAAACTTCTTGGTTGAAGTTGATATTGTATTACCTAAAGAAATGTGTCTTAAAGAAGCTCATGATATTGGTGAAGGATTACAAAAGAAATTAGAAAAATTAGAAACAGTTGAACGAGCTTTTGTACATTTAGATTATGAATTTTCACATCGTCCAGAAACTGAACATAAAATAGTTTAAAAAGAAGAAGAAAAAGAAATTTCATTGTATCCTATTTTTTTTAAAAACAGTTTAAAGTGTACACATACATATGACATGTATCTAGAATAATTTGCTAGATTTCTTTCTTTAAGAATTTCATTTCAGAGACTTTCATATGCTATTCCATTTT] consensusID : consensus_9609#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 879 fasta sequence [CAAACGCGAATTAATACGATGATTATTAGTATTGTATTTTGTGCCAACGTGGTACTTTTATTGGGTANAGCTGTAGCATCTGCATTATCAGGGTCATTAGCAATCATATCATCTTTGTTAGATAGTTGTGTTGATTTGGCTTCCGGTGGAATCATGTGGTTCGCTGCTCGTCAAATGCGTAAAAGGAAGCCATACAAATACCCAGAAGGGAGAACAAGGCTTGAACCATTAGCAGTAATTGTACTCTCTGTATTTATGGGTAGCATTTCTATACAACTTCTAGCTGAATCTATACAAGCCATGGTTCGTATGTCACAAAATAATCAAGAAGCACCGAACGTTAATGATTTAGCTTTGGGAATAATGGCATCCGTAATTGTGACTAAACTAATCCTATGGATTGTTTGTTTTAAATATGGTGGTGGAATGGCTATCGATGCTCTTAAAACCGATCAACGTAATGATATACTTACAAATGCTGCATCAATTTTATTTAGTGGTCTTGCTGGACGTTTACCCCCTTTACTAGGACAAAAACAATACGAAAATCTTAAGTATTTAGATCCCGTTGGAGCTATACTAATTGGTTCTTATATTTTGTATTCTTGGTATCAACTTGGTGCTGAACAGATACGTAATCTAGCTGGTCATACAGCTAGTCCAAGCTTTATTCAAAAGATTGCATTCGTTTGTCTTAATTATCATCCGTTGATTGAACAATTGGATACCATTAGAGCATTTCATTTTGGTGAAAACTTCTTGGTTGAACTGAAATATCTTTCAGTTCAATTTTTACGAATTTGTCTGTTATCTTTCTCAAGTGTTTTCAAAACTTACTTCTTAACATAATTATTGTTGATATTGTATTACCTAAAGAAA] [-] EMBL CD189922 [CAAACGCGAATTAATACGATGATTATTAGTATTGTATTTTGTGCCAACGTGGTACTTTTATTGGGTANAGCTGTAGCATCTGCATTATCAGGGTCATTAGCAATCATATCATCTTTGTTAGATAGTTGTGTTGATTTGGCTTCCGGTGGAATCATGTGGTTCGCTGCTCGTCAAATGCGTAAAAGGAAGCCATACAAATACCCAGAAGGGAGAACAAGGCTTGAACCATTAGCAGTAATTGTACTCTCTGTATTTATGGGTAGCATTTCTATACAACTTCTAGCTGAATCTATACAAGCCATGGTTCGTATGTCACAAAATAATCAAGAAGCACCGAACGTTAATGATTTAGCTTTGGGAATAATGGCATCCGTAATTGTGACTAAACTAATCCTATGGATTGTTTGTTTTAAATATGGTGGTGGAATGGCTATCGATGCTCTTAAAACCGATCAACGTAATGATATACTTACAAATGCTGCATCAATTTTATTTAGTGGTCTTGCTGGACGTTTA ] [-] EMBL CD190504 [ TCGATGCTCTTAAAACCGATCAACGTAATGATATACTTACAAATGCTGCATCAATTTTATTTAGTGGTCTTGCTGGACGTTTACCCCCTTTACTAGGACAAAAACAATACGAAAATCTTAAGTATTTAGATCCCGTTGGAGCTATACTAATTGGTTCTTATATTTTGTATTCTTGGTATCAACTTGGTGCTGAACAGATACGTAATCTAGCTGGTCATACAGCTAGTCCAAGCTTTATTCAAAAGATTGCATTCGTTTGTCTTAATTATCATCCGTTGATTGAACAATTGGATACCATTAGAGCATTTCATTTTGGTGAAAACTTCTTGGTTGAACTGAAATATCTTTCAGTTCAATTTTTACGAATTTGTCTGTTATCTTTCTCAAGTGTTTTCAAAACTTACTTCTTAACATAATTATTGTTGATATTGTATTACCTAAAGAAA] consensusID : consensus_9609#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 422 fasta sequence [GTGATATACTACAAAGCTGCATCAATTTATTATGGCTTGCTGGACGTTTACCCCTTTACTAGGACAAAAACATCGAAAATCTTAAGTATTTAATCCCTGGACTATCTATTGGTTCTTATATTTTGATTCTTGGATAACTTGGTGCTGAACAGATCTAATCTACTGGTCATACACTAGTCCAACTTTATTCAAAAGATTGCATTCTTGTCTTAATTATCATCCGTGATTGAACAATTGGATACCATTAGAGCATTTCATTTTGGTGAAAACTTCTTGGTTGAAGTCATATTGGTTACCTAAAGAAATGTGTCTATAAAAGCTCAGATATTGTGAAGGATTACAAAAGAAATTGAAAAATTCAAACAGTTGAACGAGCTTTTGTCATTTAGATTATGAATTTTCACATCGTCCAGAAACTGAAC] [+] EMBL CD168357 [GTGATATACTACAAAGCTGCATCAATTTATTATGGCTTGCTGGACGTTTACCCCTTTACTAGGACAAAAACATCGAAAATCTTAAGTATTTAATCCCTGGACTATCTATTGGTTCTTATATTTTGATTCTTGGATAACTTGGTGCTGAACAGATCTAATCTACTGGTCATACACTAGTCCAACTTTATTCAAAAGATTGCATTCTTGTCTTAATTATCATCCGTGATTGAACAATTGGATACCATTAGAGCATTTCATTTTGGTGAAAACTTCTTGGTTGAAGTCATATTGGTTACCTAAAGAAATGTGTCTATAAAAGCTCAGATATTGTGAAGGATTACAAAAGAAATTGAAAAATTCAAACAGTTGAACGAGCTTTTGTCATTTAGATTATGAATTTTCACATCGTCCAGAAACTGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9609#0 -----------------------------------------------CCTCGAGGCCAAA 13 consensus_9609#2 ------------------------------------------------------------ consensus_9609#1 CAAACGCGAATTAATACGATGATTATTAGTATTGTATTTTGTGCCAACGTGGTACTTTTA 60 consensus_9609#0 AATTCGGCACGAGGAGCATCTGCATTATCAGGGTCATTAGCAATCATATCATCTTTGTTA 73 consensus_9609#2 ------------------------------------------------------------ consensus_9609#1 TTGGGTANAGCTGTAGCATCTGCATTATCAGGGTCATTAGCAATCATATCATCTTTGTTA 120 consensus_9609#0 GATAGTTGTGTTGATTTGGCTTCCGGTGGAATCATGTGGTTCGCTGCTCGTCAAATGCGT 133 consensus_9609#2 ------------------------------------------------------------ consensus_9609#1 GATAGTTGTGTTGATTTGGCTTCCGGTGGAATCATGTGGTTCGCTGCTCGTCAAATGCGT 180 consensus_9609#0 AAAAGGAAGCCATACAAATACCCAGAAGGGAGAACAAGGCTTGAACCATTAGCAGTAATT 193 consensus_9609#2 ------------------------------------------------------------ consensus_9609#1 AAAAGGAAGCCATACAAATACCCAGAAGGGAGAACAAGGCTTGAACCATTAGCAGTAATT 240 consensus_9609#0 GTACTCTCTGTATTTATGGGTAGCATTTCTATACAACTTCTAGCTGAATCTATACAAGCC 253 consensus_9609#2 ------------------------------------------------------------ consensus_9609#1 GTACTCTCTGTATTTATGGGTAGCATTTCTATACAACTTCTAGCTGAATCTATACAAGCC 300 consensus_9609#0 ATGGTTCGTATGTCACAAAATAATCAAGAAGCACCGAACGTTAATGATTTAGCTTTGGGA 313 consensus_9609#2 ------------------------------------------------------------ consensus_9609#1 ATGGTTCGTATGTCACAAAATAATCAAGAAGCACCGAACGTTAATGATTTAGCTTTGGGA 360 consensus_9609#0 ATAATGGCATCCGTAATTGTGACTAAACTAATCCTATGGATTGTTTGTTTTAAATATGGT 373 consensus_9609#2 ------------------------------------------------------------ consensus_9609#1 ATAATGGCATCCGTAATTGTGACTAAACTAATCCTATGGATTGTTTGTTTTAAATATGGT 420 consensus_9609#0 GGTGGAATGGCTATCGATGCTCTTAAAACCGATCAACGTAATGATATACTTACAAATGCT 433 consensus_9609#2 ----------------------------------------GTGATATACT-ACAAA-GCT 18 consensus_9609#1 GGTGGAATGGCTATCGATGCTCTTAAAACCGATCAACGTAATGATATACTTACAAATGCT 480 ********* ***** *** consensus_9609#0 GCATCAATTTTATTTAGTGGTCTTGCTGGACGTTTACCCCCTTTACTAGGACAAAAACAA 493 consensus_9609#2 GCATCAATTTATTATGG----CTTGCTGGACGTTTACCCC-TTTACTAGGACAAAAACAT 73 consensus_9609#1 GCATCAATTTTATTTAGTGGTCTTGCTGGACGTTTACCCCCTTTACTAGGACAAAAACAA 540 ********** * * * ******************* ****************** consensus_9609#0 TACGAAAATCTTAAGTATTTAGATCCCGTTGGAGCTATACTTATTGGTTCTTATATTTTG 553 consensus_9609#2 --CGAAAATCTTAAGTATTTA-ATCCC--TGGA---CTATCTATTGGTTCTTATATTTTG 125 consensus_9609#1 TACGAAAATCTTAAGTATTTAGATCCCGTTGGAGCTATACTAATTGGTTCTTATATTTTG 600 ******************* ***** **** ** ****************** consensus_9609#0 TATTCTTGGTATCAACTTGGTGCTGAACAGATACGTAATCTAGCTGGTCATACAGCTAGT 613 consensus_9609#2 -ATTCTTGGA--TAACTTGGTGCTGAACAGAT--CTAATCTA-CTGGTCATACA-CTAGT 178 consensus_9609#1 TATTCTTGGTATCAACTTGGTGCTGAACAGATACGTAATCTAGCTGGTCATACAGCTAGT 660 ******** ******************* ******* *********** ***** consensus_9609#0 CCAAGCTTTATTCAAAAGATTGCATTCGTTTGTCTTAATTATCATCCGTTGATTGAACAA 673 consensus_9609#2 CCAA-CTTTATTCAAAAGATTGCATTC--TTGTCTTAATTATCATCCGT-GATTGAACAA 234 consensus_9609#1 CCAAGCTTTATTCAAAAGATTGCATTCGTTTGTCTTAATTATCATCCGTTGATTGAACAA 720 **** ********************** ******************** ********** consensus_9609#0 TTGGATACCATTAGAGCATTTCATTTTGGTGAAAACTTCTTGGTTGAAGTTGATATTGTA 733 consensus_9609#2 TTGGATACCATTAGAGCATTTCATTTTGGTGAAAACTTCTTGGTTGAAGTC-ATATTG-G 292 consensus_9609#1 TTGGATACCATTAGAGCATTTCATTTTGGTGAAAACTTCTTGGTTGAACTG-AAAT---A 776 ************************************************ * * ** consensus_9609#0 TTACCTAAAGAAATGTGTCTTAAAGAAGCTCATGATATTGGTGAAG-GATTACAAAAGAA 792 consensus_9609#2 TTACCTAAAGAAATGTGTCT-ATAAAAGCTCA-GATATTG-TGAAG-GATTACAAAAGAA 348 consensus_9609#1 TCTTTCAGTTCAATTTTTAC-GAATTTGTCTGTTATCTTTCTCAAGTGTTTTCAAAACTT 835 * * *** * * * * ** ** * *** * ** ***** consensus_9609#0 ATTAGAAAAATTAGAAACAGTTGAACGAGCTTTTGTACATTTAGATTATGAATTTTCACA 852 consensus_9609#2 ATTGAAAAATTCA--AACAGTTGAACGAGCTTTTGT-CATTTAGATTATGAATTTTCACA 405 consensus_9609#1 ACTTCTTAACATA---ATTATTGT-TGATATTGTAT-TACCTAAAGAAA----------- 879 * * ** * * *** ** ** * * * ** * * consensus_9609#0 TCGTCCAGAAACTGAACATAAAATAGTTTAAAAAGAAGAAGAAAAAGAAATTTCATTGTA 912 consensus_9609#2 TCGTCCAGAAACTGAAC------------------------------------------- 422 consensus_9609#1 ------------------------------------------------------------ consensus_9609#0 TCCTATTTTTTTTAAAAACAGTTTAAAGTGTACACATACATATGACATGTATCTAGAATA 972 consensus_9609#2 ------------------------------------------------------------ consensus_9609#1 ------------------------------------------------------------ consensus_9609#0 ATTTGCTAGATTTCTTTCTTTAAGAATTTCATTTCAGAGACTTTCATATGCTATTCCATT 1032 consensus_9609#2 ------------------------------------------------------------ consensus_9609#1 ------------------------------------------------------------ consensus_9609#0 TT 1034 consensus_9609#2 -- consensus_9609#1 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||