These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9611#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1047 fasta sequence [TATTTGACTTTCAGCGATATGTGCAGCCCAAAGTAGTTGAAAAAATCGCCCAGAGAAGTCGCGGTTTTCTTCGTGAGTTGAGGCTGAAAGGTTGTCGAAATGTTACCGATGAGGCTCTAAAATGTTTTACTGAACTTTGTCATATGATTGAAAGTTTGGACTTGTCAGGATGTCAAAACTTGACGAATGGAACTTGCAGTTATTTGGGAAAAAATTGTTCTCTTCTGACTACTTTGTCCCTGGAAAGTTGCTCTCGTATAGATGATGCTGGATTAGAAATGCTAAGCTCGTGTTCAAATCTAACATGTTTGGATGTGTCATGGTGTAGTGTTGGAGATCGTGGACTAACTGCTATCGCCAGAGGATGTAAAAGTTTGCAAAGATTTCGTGCTATAGGTTGTCAAGAGATAACAAGTCGTGGTGTAGAACAATTAGCACGTCACTGCCATGGTTTATTACTGTTGAACTTGAATTACTGTGGACAGGGTGTCACAGATGAAGCTATGGTTCATCTTTCTATTGGTTGTCCCGATCTACGTGTACCAGCTATATCACATTGTCCAATAACTGATCAAGGTCTTCGTGCAATCGCTGGCACATTATCGCCAGCTGCAGCGGCAGCTATCGTTGGACAATCTACATCTGCCAGTCAGCAAAATGGGATCCCTTTAATTCTTCCAGTAGTAACAAGCAATGGAAGTGTTAATCATCAAGATGCTTCATCACCAAACAATAATGATAATAATCATGGAGATCGAAATTCAACCGTAAATAATAATCGACGTC------AAAAAACTAATGATTCTAATAAGACAACATTGAATCCAGTTGGATGTGTTAGCTTAACAACTTTAGAAGTGGCTCGTTGTTCAGCTATCACAGATATTGGCCTATCAGCTATCGCACGTGTTTGCAATAAACTTGAAAAATTGGATCTAGAAGATTGTGCATTAGTGACTGATTCAACTNTAGCTCAATTAGCTGTACATTGTCCACGTTTAAACACACTGGTATTATCACACTGTGATCAAGTGACTGATGAAGGTATTG] [+] EMBL CD179938 [TATTTGACTTTCAGCGATATGTGCAGCCCAAAGTAGTTGAAAAAATCGCCCAGAGAAGTCGCGGTTTTCTTCGTGAGTTGAGGCTGAAAGGTTGTCGAAATGTTACCGATGAGGCTCTAAAATGTTTTACTGAACTTTGTCATATGATTGAAAGTTTGGACTTGTCAGGATGTCAAAACTTGACGAATGGAACTTGCAGTTATTTGGGAAAAAATTGTTCTCTTCTGACTACTTTGTCCCTGGAAAGTTGCTCTCGTATAGATGATGCTGGATTAGAAATGCTAAGCTCGTGTTCAAATCTAACATGTTTGGATGTGTCATGG ] [+] EMBL CD181006 [ GGCTCTAAAATGTTTTACTGAACTTTGTCATATGATTGAAAGTTTGGACTTGTCAGGATGTCAAAACTTGACGAATGGAACTTGCAGTTATTTGGGAAAAAA ] [+] EMBL CD188547 [ AGTTATTTGGGAAAAAATTGTTCTCTTCTGACTACTTTGTCCCTGGAAAGTTGCTCTCGTATAGATGATGCTGGATTAGAAATGCTAAGCTCGTGTTCAAATCTAACATGTTTGGATGTGTCATGGTGTAGTGTTGGAGATCGTGGACTAACTGCTATCGCCAGAGGATGTAAAAGTTTGCAAAGATTTCGTGCTATAGGTTGTCAAGAGATAACAAGTCGTGGTGTAGAACAATTAGCACGTCACTGCCATGGTTTATTACTGTTGA ] [+] EMBL CD188056 [ CCTGGAAAGTTGCTCTCGTATAGATGATGCTGGATTAGAAATGCTAAGCTCGTGTTCAAATCTAACATGTTTGGATGTGTCATGGTGTAGTGTTGGAGATCGTGGACTAACTGCTATCGCCAGAGGATGTAAAAGTTTGCAAAGATTTCGTGCTATAGGTTGTCAAGAGATAACAAGTCGTGGTGTAGAACAATTAGCACGTCACTGCCATGGTTTATTACTGTTGAACTTGAATTACTGTGGACAGGGTGTCACAGATGAAGCTATGGTTCATCTTTCTATTGGTTGTCCCGATCTACGTGTACCAGCTATATCACATTGTCCAATAACTGATCAAGGTCTTCGTGCAATCGCTGGCACATTATCGCCAGCTGCAGCGGCAGCTATCGTTGGACAATCT ] [+] EMBL CD123194 [ TTAGCACGTCACTGCCATGGTTTATTACTGTTGAACTTGAATTACTGTGGACAGGGTGTCACAGATGAAGCTATGGTTCATCTTTCTATTGGTTGTCCCGATCTACGTGTACTAGCTATATCACATTGTCCAATAACTGATCAAGGTCTTCGTGCAATCGCTGGCACATTATCGCCAGCTGCAGCGGCAGCTATCGTTGGACAATCTACATCTGCCAGTCAGCAAAATGGGATCCCTTTAATTCTTCCAGTAGTAACAAGCAATGGAAGTGTTAATCATCAAGATGCTTCATCACCAAACAATAATGATAATAATCATGGAGATCGAAATTCAACCGTAAATAATAATCGACGTCAAAAAAAAAAAACTAATGATTCTAATAAGACAACATTGAATCCAGTTGGGTGTGTTAGCTTAACAACTTTAGAGGTGGCTCGTTGTTCAGCTATCACAGATATTGGCCTATCAGCTATCGCACGTGTTTGCAATAAACTTGAAAAATTGGATCTAGAAGATTGTGCATTAGTGACTGATTCAACTNTA ] [+] EMBL CD202944 [ AATAATGATAATAATCATGGAGATCGAAATTCAACCGTAAATAATAATCGACGTC AAAAAACTAATGATTCTAATAAGACAACATTGAATCCAGTTGGATGTGTTAGCTTAACAACTTTAGAAGTGGCTCGTTGTTCAGCTATCACAGATATTGGCCTATCAGCTATCACACGTGTTTGCAATAAACTTGAAAAATTGGATCTAGAAGATTGTGCATTAGTGACTGATTCAACTTTAGCTCAATTAGCTGTACATTGTCCACGTTTAAACACACTGGTATTATCACACTGTGATCAAGTGACTGATGAAGGTATTG] [-] EMBL CD181496 [ GATCGAAATTCAACCGTAAATAATAATCGACGTC AAAAAACTAATGATTCTAATAAGACAACATTGAATCCAGTTGAATGTGTTAGCTTAACAACTTTAGAAGTGGCTCGTTGTTCAGCTATCACAGATATTGGCCTATCAGCTATCGCACGTGTTTGCAATAAACTTGAAAAATTGGATCTAGAAGATTGTGCATTAGTGAC ] consensusID : consensus_9611#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 285 fasta sequence [GCTTTCGATGGGAGCAACTGGAAGAGTATTAATTTATTTGACTTTCAGCGATATGTGCAGGTAATTTGTATCGTCCAAATAACTCAACATAAATAGCCCAAAGTAGTTGAAAAAATCGCCCAGAGAAGTCGCGGTTCTCTTCGTGAGTTGAGGCTGAAAGGTTGTCGAAATGTTACCGATGAGGCTCTAAAATGTTTTACTGAACTTTGTCATATGATTGAAAGTTTGGACTTGTCATGATGTCAAAACTTGACGAATGGAACTTGCAATTGTTTGGGAAAAAAT] [+] EMBL CD117980 [GCTTTCGATGGGAGCAACTGGAAGAGTATTAATTTATTTGACTTTCAGCGATATGTGCAGGTAATTTGTATCGTCCAAATAACTCAACATAAATAGCCCAAAGTAATTGAAAAAATCGCCCAAAGAAGTCGCGGTTCTCTTCGTGAGTTGAAGCTGAAAGGTTGTCCAAATGTTACCGATGAGGCTCTAAAATGTTTTACTGAACTTTGTCATATGATTGAAAGTTTGGACTTGTCATGATGTCAAAACTTGACGAATGGAACTTGCAATTGTTTGGGAAAAAAT] [+] EMBL CD117839 [GCTTTCGATGGGAGCAACTGGAAGAGTATTAATTTATTTGACTTTCAGCGATATGTGCAGGTAATTTGTATCGTCCAAATAACTCAACATAAATAGCCCAAAGTAGTTGAAAAAATCGCCCAGAGAAGTCGCGGTTCTCTTCGTGAGTTGAGGCTGAAAGGTTGTCGAAATGTTACCGATGAGGCTCTAAAATGTTTTACTGAACTTTGTCATATGATTGAAAGTTTGGACTTGTCAGGATGTCAAAACTTGACGAAT ] [+] EMBL CD118165 [GCTTTCGATGGGAGCAACTGGAAGAGTATTAATTTATTTGACTTTCAGCGATATGTGCAGGTAATTTGTATCGTCCAAATAACTCAACATAAATAGCCCAAAGTAGTTGAAAAAATCGCCCAGAGAAGTCGCGGTTCTCTTCGTGAGTTGAGGCTGAAAGGTTGTCGAAATGTTACCGATGAGGCTCTAAAATGTTTTACTGAACTTTGTCATATGATTGAAAGTTTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9611#0 ------------------------------------------------------------ consensus_9611#1 GCTTTCGATGGGAGCAACTGGAAGAGTATTAATTTATTTGACTTTCAGCGATATGTGCAG 60 consensus_9611#0 ----TATTTGACTTTCAG------CGATATGTGCAGCCCAAAGTAGTTGAAAAAATCGCC 50 consensus_9611#1 GTAATTTGTATCGTCCAAATAACTCAACATAAATAGCCCAAAGTAGTTGAAAAAATCGCC 120 * * * * * ** * * ** ************************** consensus_9611#0 CAGAGAAGTCGCGGTTTTCTTCGTGAGTTGAGGCTGAAAGGTTGTCGAAATGTTACCGAT 110 consensus_9611#1 CAGAGAAGTCGCGGTTCTCTTCGTGAGTTGAGGCTGAAAGGTTGTCGAAATGTTACCGAT 180 **************** ******************************************* consensus_9611#0 GAGGCTCTAAAATGTTTTACTGAACTTTGTCATATGATTGAAAGTTTGGACTTGTCAGGA 170 consensus_9611#1 GAGGCTCTAAAATGTTTTACTGAACTTTGTCATATGATTGAAAGTTTGGACTTGTCATGA 240 ********************************************************* ** consensus_9611#0 TGTCAAAACTTGACGAATGGAACTTGCAGTTATTTGGGAAAAAATTGTTCTCTTCTGACT 230 consensus_9611#1 TGTCAAAACTTGACGAATGGAACTTGCAATTGTTTGGGAAAAAAT--------------- 285 **************************** ** ************* consensus_9611#0 ACTTTGTCCCTGGAAAGTTGCTCTCGTATAGATGATGCTGGATTAGAAATGCTAAGCTCG 290 consensus_9611#1 ------------------------------------------------------------ consensus_9611#0 TGTTCAAATCTAACATGTTTGGATGTGTCATGGTGTAGTGTTGGAGATCGTGGACTAACT 350 consensus_9611#1 ------------------------------------------------------------ consensus_9611#0 GCTATCGCCAGAGGATGTAAAAGTTTGCAAAGATTTCGTGCTATAGGTTGTCAAGAGATA 410 consensus_9611#1 ------------------------------------------------------------ consensus_9611#0 ACAAGTCGTGGTGTAGAACAATTAGCACGTCACTGCCATGGTTTATTACTGTTGAACTTG 470 consensus_9611#1 ------------------------------------------------------------ consensus_9611#0 AATTACTGTGGACAGGGTGTCACAGATGAAGCTATGGTTCATCTTTCTATTGGTTGTCCC 530 consensus_9611#1 ------------------------------------------------------------ consensus_9611#0 GATCTACGTGTACCAGCTATATCACATTGTCCAATAACTGATCAAGGTCTTCGTGCAATC 590 consensus_9611#1 ------------------------------------------------------------ consensus_9611#0 GCTGGCACATTATCGCCAGCTGCAGCGGCAGCTATCGTTGGACAATCTACATCTGCCAGT 650 consensus_9611#1 ------------------------------------------------------------ consensus_9611#0 CAGCAAAATGGGATCCCTTTAATTCTTCCAGTAGTAACAAGCAATGGAAGTGTTAATCAT 710 consensus_9611#1 ------------------------------------------------------------ consensus_9611#0 CAAGATGCTTCATCACCAAACAATAATGATAATAATCATGGAGATCGAAATTCAACCGTA 770 consensus_9611#1 ------------------------------------------------------------ consensus_9611#0 AATAATAATCGACGTCAAAAAACTAATGATTCTAATAAGACAACATTGAATCCAGTTGGA 830 consensus_9611#1 ------------------------------------------------------------ consensus_9611#0 TGTGTTAGCTTAACAACTTTAGAAGTGGCTCGTTGTTCAGCTATCACAGATATTGGCCTA 890 consensus_9611#1 ------------------------------------------------------------ consensus_9611#0 TCAGCTATCGCACGTGTTTGCAATAAACTTGAAAAATTGGATCTAGAAGATTGTGCATTA 950 consensus_9611#1 ------------------------------------------------------------ consensus_9611#0 GTGACTGATTCAACTNTAGCTCAATTAGCTGTACATTGTCCACGTTTAAACACACTGGTA 1010 consensus_9611#1 ------------------------------------------------------------ consensus_9611#0 TTATCACACTGTGATCAAGTGACTGATGAAGGTATTG 1047 consensus_9611#1 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||