These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9613#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1491 fasta sequence [TATGTTCATAAAGCAATCAAATTGTCGCATGATTTACGCAACAAGGATTTTTCAATAAAAACTACTCGTGATCTCCATATTAAGACTGCTCATGAAGGAATAAATTATCAATGTGGTCAATGTAATAGAAATTTTGCTTGTAAATCCAACTTACTTCAACATATTCATGTTCTTCATAATCGAATAAAATATTCATGTGTTCAATGTTATAAAACGTTTACAACTAAATCTCATTTAAATAAACACGTAAAACCTATTCACGAAAAATTGAAATATGCGTGTGATCAGTGTAGTGCAGAGTTTACATCTAAATTTTATTTGATTGAACATATGAAGGTGATCCATGAGGGAAAAAAATATCCATGTTATCAATGTGATAAAAATTTTTCATCTAAATGCAATTTAAATATACATGTAAAAGTTATTCATCAAGGTATAAGATTTATCTGTAATGTATGTAACAAACAGTTTGCTTTTAAAGGAAATCTAG--AGACATCACAAGAATATTCATGAAGGAATAAGATATGCATGTAATCGTTGTGATAGAAAGTTTACAACAAAATATGATTTAATTGGACACATAAAAGTTATTCATGAAGGGACAGAATATCGATGCGATCAATGTAATAGAAAATTTACATCTAAAGCCAACTTAAATGAACATCTGAGAAGTGTTCATACAGGAGTGAGGTTTGCTTGTGAACAATGCGATAGAAAATATATACAAAGAAGTGGGCTGAATAGACATATTAAAATGGTTCACGAAGGAGCAGAATTTTCATGTGTCTAGCACGAATATATAGCCTATTGAAAGATGTCCACTGAAAGAATCATACATGCAAAGCTATCTTCACTATTTACTGACTGGTTTTTGGAAGTCTTCGTTATCCAGCCCTTAGATGTAATGTTGTTAAAACAAAAAAAATACTCATTATCCACACAATCATTATAAGACAATAAAACAAACTTTAGTTTCTCATTTGGTTCAATAACCTTTCCTCTTTGTATGCTTATCAGAAGTACCTTTTG-TATAATATTTATTTTTTAATTG-TTTTTACTTTATATAATCTTCACTGTACAAATGAAGTTATTATTTTTTACTGAGTTTGTAGTTGCTATTCTGCGTTCTATTTACATATGCATGGGTAACGTATGCAATATTCTTTCTTATTTCATAAATCCGTACAAATCATATCATTTCGAAGCGTATTGACTTTCAACTAACTATTTTGCCAGCTACGACATTTTGATCCGGCGTTGTCAATCGTATTCGATTGTAAAACAGTATTAGTCCAGGAAGTAAATGAAATTAATGGAGATGAAGAAAAATGGAAGTCAGATTCAGCTATGATTGTAGTAGATTGATTGATCACGTTATATATGTGTAATGTAAGTGTAGTAGAACACAAATATCTGAAATTGTGTCAAAAAAAACAAACCCCTAATTAGTTATGTCAAATGTAGCTTCTTGAAAATAAATATGTTGTTTTT] [+] EMBL CD121774 [TATGTTCATAAAGCAATCAAATTGTCGCATGATTTACGCAACAAGGATTTTTCAATAAAAACTACTCGTGATCTCCATATTAAGACTGCTCATGAAGGAATAAATTATCAATGTGGTCAATGTAATAGAAATTTTGCTTGTAAATCCAACTTACTTCAACATATTCATGTTCTTCATAATCGAATAAAATATTCATGTGTTCAATGTTATAAAACGTTTACAACTAAATCTCATTTAAATAAACACGTAAAACCTATTCACGAAAAATTGAAATATGCGTGTGATCAGTGTAGTGCAGAGTTTACATCTAAATTTTATTTGATTGAACATATGAAGGTGATCCATGAGGGAAAAAAATATCCATGTTATCAATGTGATAAAAATTTTTCATCTAAATGCAATTTAAATATACATGTAAAAGTTATTCATCAAGGTATAAGATTT ] [+] EMBL AA566185 [ ATGATTTACGCAACAAGGATTTTTCAATAAAAACTACACGTGATCTCCATATTAAGACTGCTCATGAAGGAATAAATTATCAATGTGGTCAATGTAATAGAAATTTTGCTTGTAAATGCAACTTACTTCAACATATTCATGTTCTTCATAATCGAATAAAATATTCATGTGTTCAATGTTATAAAACGTTTACAACTAAATCTCATTTAAATAAACACGTAAAATCTATTCACGAAAA ] [+] EMBL CD079951 [ TTGAAATATGCGTGTGATCAGTGTAGTGCAGAGTTTACATCTAAATTTTATTTGATTGAACATATGAAGGTGATCCATGAGGGAAAAAAATATCCATGTTATCAATGTGATAAAAATTTTTCATCTAAATGCAATTTAAATATACATGTAAAAGTTATTCATCAAGGTATAAGATTTATCTGTAATGTATGTAACAAACAGTTTGCTTTTAAAGGAAATCTAG AGACATCACAAGAATATTCATGAAGGAATAAGATATGCATGTAATCGTTGTGATAGAAAGTTTACAACAAAATATGATTTAATTGGACACATAAAAGTTATTCATGAAGGGACAGAATATCGATGCGATCAATGTAATAGAAAATTTACATCTAAAGCCAACTTAAATGAACATCTGAGAAGTGTTCATACAGGAGTGAGGTTTGCTTGTGAACAATGCGATAGAAAATATATACAAAGAAGTGGGCTGAATAGACATATTAAAATGGTTCACGAAGGAGCAGAATTTTCATGTGTCTAGCACGAATATATAGCCTATTGAAAGATGTCCACTGAAAGAATCATACATGCAAAGCTATCTTCACTATTTACTGACTGGTTNTTGGAAGTCTTCGTTATCCAGCCCTTAGATGTAATGTTGTTAAAAC AAANANATACTCATTATCCACACAATCATTATTAGAACAT ANACANACTNTAGTTTCTCATTTGGTTCAATACCNTNTNCTCTTTGTATGCTTATCAGAAGTACCTTNTGNNAT ATA TTATTNNTTAATNGNTNNNTAC TTATATAAT ] [+] EMBL CD097339 [ TCAATGTGATAAAAATTTTTCATCTAAATGCAATTTAAATATACATGTAAAAGTTATTCATCAAGGTATAAGATTTATCAGTAATGTATGTAACAAACAGTTTGCTTTTAAAGGAAATCTAGATAGACATCACAAGAATATTCATGAAGGAATAAGATATGCATGTAATCGTTGTGATAGAAAGTTTACAACAAAATATGATTTAATTGGACACATAAAAGTTATTCATGAAGGGACAGAATATCGATGCGATCAATGTAATAGAAAATTTACATCTAAAGCCAACTTAAATGAACATCTGAGAAGTGTTCATACAGGAGTGAGGTTTGCTTGTGAACAATGCGATAGAAAATATATACAAAGAAGTGGGCTGAATAGACATATTAAAATGGTTCACGAAGGAGCAGAATTTTCATGTGTCTAGCACGAATATATAGCCTATTGAAAGATGTCCACTGAAAGAATCATACATGCAAAGCTATCTTCACTATTTACTGACTGGTTTTTGGAAGTCTTCGTTATCCAGCCCTTAGATGTAATGTTGT ] [-] EMBL CD074147 [ AGTTATTCATCAAGGTATAAGATTTATCTGTAATGTATGTAACAAACAGTTTGCTTTTAAAGGAAATCTAG AGACATCACAAGAATATTCATGAAGGAATAAGATATGCATGTAATCGTTGTGATAGAAAGTTTACAACAAAATATGATTTAATTGGACACATAAAAGTTATTCATGAAGGGACAGAATATCGATGCGATCAATGTAATAGAAAATTTACATCTAAAGCCAACTTAAATGAACATCTGAGAAGTGTTCATACAGGAGTGAGGTTTGCTTGTGAACAATGCGATAGAAAATATATACAAAGAAGTGGGCTGAATAGACATATTAAAATGGTTCACGAAGGAGCAGAATTTTCATGTGTCTAGCACGAATATATAGCCTATTGAAAGATGTCCACTGAAAGAATCATACATGCAAAGCTATCTTCACTATTTACTGACTGGTTTTTGGAAGTCTTCGTTATCCAGCCCTTAGATGTAATGTTGTTAAAACAAAAAAAATACTCATTATCCACACAATCATTATAAGACAATAAAACAAACTTTAGTTTCTCATTTGGTTCAATAACCTTTCCTCTTTGTATGCTTATCAGAAGTACCTTTTG TATAATATTTATTTTTTAATTG TTTTTACTTTATATAATCT ] [+] EMBL CD197210 [ TTATTCATGAAGGGACAGAATATCGATGCGATCAATGTAATAGAAAATTTACATCTAAAGCCAACTTAAATGAACATCTGAGAAGTGTTCATACAGGAGTGAGGTTTGCTTGTGAACAATGCGATAGAAAATATATACAAAGAAGTGGGCTGAATAGACATATTAAAATGGTTCACGAAGGAGCAGAATTTTCATGTGTCTAGCACGAATATATAGCCTATTGAAAGATGTCCACTGAAAGAATCATACATGCAAAGCTATCTTCACTATTTACTGACTGGTTTTTGGAAGTCTTCGTTATCCAGCCCTTAGATGTAATGTTGTTAAAACAAAAAAAATACTCATTATCCACACAATCATTATAAGACAATAAAACAAACTTTAGTCTCTCATTTGGTTCA ] [+] EMBL CD158484 [ ACAGAATATCGATGCGATCAATGTAATAGAAAATTTACATCTAAAGCCAACTTAAATGAACATCTGAGAAGTGTTCATACAGGAGTGAGGTTTGCTTGTGAACAATGCGATAGAAAATATATACAAAGAAGTGGGCTGAATAGACATATTAAAATGGTTCACGAAGGAGCAGAATTTTCATGTGTCTAGC ] [+] EMBL CD078563 [ TCGATGCGATCAATGTAATAGAAAATTTACATCTAAAGCCAACTTAAATGAACATCTGAGAAGTGTTCATACAGGAGTGAGGTTTGCTTGTGAACAATGCGATAGAAAATATATACAAAGAAGTGGGCTGAATAGACATATTAAAATGGTTCACGAAGGAGCAGAATTTTCATGTGTCTAGCACGAATATATAGCCTATTGAAAGATGTCCACTGAAAGAATCATACATGCAAAGCTATCTTCACTATTTACTGACTGGTTTTTGGAAGTCTTCGTTATCCAGCCCTTAGATGTAATGTTGTTAAAACAAAAAAAATACTCATTATCCACACAATCATTATAAGACAATAAAACAAACTTTAGTTTCTCATTTGGTTCAATAACCTTTCCTCTTTGTATGCTTATCAGAAGTACCTTTTG TATAATATTTATTTTTTAATTG TTTTTACTTTATATAATCTTCACTGTACAAATGAAGTTATTATTTTTTACTGAGTTTGTAGTTGCTATTCTGCGTTCTATTTACATATGCATGGGTAACGTATGCAATATTCTTTCTTATTTCATAAATCCGTACAAATCATATCATTTCGAAGCGTATTGACTTTCAACTAACTATTTTGC ] [-] EMBL CD073030 [ AGTTTCTCATTTGGTTCAATAACCTTTCCTCTTTGTATGCTTATCAGAAGTACCTTTTG TATAATATTTATTTTTTAATTG TTTTTACTTTATATAATCTTCACTGTACAAATGAAGTTATTATTTTTTACTGAGTTTGTAGTTGCTATTCTGCGTTCTATTTACATATGCATGGGTAACGTATGCAATATTCTTTCTTATTTCATAAATCCGTACAAATCATATCATTTCGAAGCGTATTGACTTTCAACTAACTATTTTGCCAGCTACGACATTTTGATCCGGCGTTGTCAATCGTATTCGATTGTAAAACAGTATTAGTCCAGGAAGTAAATGAAATTAATGGAGATGAAGAAAAATGGAAGTCAGATTCAGCTATGATTGTAGTAGATTGATTGATCACGTTATATATGTGTAATGTAAGTGTAGTAGAACACAAATATCTGAAATTGTGTCAAAAAAAACAAACCCCTAATTAGTTATGTCAAATGTAGCTTCTTGAAAATAAATATGTTGTTTTT] consensusID : consensus_9613#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 266 fasta sequence [ATTTTTGGCACTGAGGTTTCCCTTTATCAGGAATAAGATATGCATGTAATCGTTGTGATAGAAAGTTTACAACAAAATATGATTTAATTGGACACATAAAAGTTATTCATGAAGGGACAGAATATCGATGCGATCAATGTAATAGAAAATTACACTTATAACGCCAACTTAAATGAACATCTGAGAAGTGTTCATACAGGAGTGAGGTTTGCTTGTGAACAATGCGATAGAAAATATATACAAAGAAGTGGGCTGAATAGACATAT] [+] EMBL CD080833 [ATTTTTGGCACTGAGGTTTCCCTTTATCAGGAATAAGATATGCATGTAATCGTTGTGATAGAAAGTTTACAACAAAATATGATTTAATTGGACACATAAAAGTTATTCATGAAGGGACAGAATATCGATGCGATCAATGTAATAGAAAATTACACTTATAACGCCAACTTAAATGAACATCTGAGAAGTGTTCATACAGGAGTGAGGTTTGCTTGTGAACAATGCGATAGAAAATATATACAAAGAAGTGGGCTGAATAGACATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9613#0 TATGTTCATAAAGCAATCAAATTGTCGCATGATTTACGCAACAAGGATTTTTCAATAAAA 60 consensus_9613#1 ------------------------------------------------------------ consensus_9613#0 ACTACTCGTGATCTCCATATTAAGACTGCTCATGAAGGAATAAATTATCAATGTGGTCAA 120 consensus_9613#1 ------------------------------------------------------------ consensus_9613#0 TGTAATAGAAATTTTGCTTGTAAATCCAACTTACTTCAACATATTCATGTTCTTCATAAT 180 consensus_9613#1 ------------------------------------------------------------ consensus_9613#0 CGAATAAAATATTCATGTGTTCAATGTTATAAAACGTTTACAACTAAATCTCATTTAAAT 240 consensus_9613#1 ------------------------------------------------------------ consensus_9613#0 AAACACGTAAAACCTATTCACGAAAAATTGAAATATGCGTGTGATCAGTGTAGTGCAGAG 300 consensus_9613#1 ------------------------------------------------------------ consensus_9613#0 TTTACATCTAAATTTTATTTGATTGAACATATGAAGGTGATCCATGAGGGAAAAAAATAT 360 consensus_9613#1 ------------------------------------------------------------ consensus_9613#0 CCATGTTATCAATGTGATAAAAATTTTTCATCTAAATGCAATTTAAATATACATGTAAAA 420 consensus_9613#1 ------------------------------------------------------------ consensus_9613#0 GTTATTCATCAAGGTATAAGATTTATCTGTAATGTATGTAACAAACAGTTTGCTTTTAAA 480 consensus_9613#1 ------------------------------------------------------------ consensus_9613#0 GGAAATCTAGAGACATCACAAGAATATTCATGAAGGAATAAGATATGCATGTAATCGTTG 540 consensus_9613#1 ---ATTTTTGGCAC-TGAGGTTTCCCTTTATCA-GGAATAAGATATGCATGTAATCGTTG 55 * * * * ** * * ** ** * ************************** consensus_9613#0 TGATAGAAAGTTTACAACAAAATATGATTTAATTGGACACATAAAAGTTATTCATGAAGG 600 consensus_9613#1 TGATAGAAAGTTTACAACAAAATATGATTTAATTGGACACATAAAAGTTATTCATGAAGG 115 ************************************************************ consensus_9613#0 GACAGAATATCGATGCGATCAATGTAATAGAAAATT-TACATCTAAAGCCAACTTAAATG 659 consensus_9613#1 GACAGAATATCGATGCGATCAATGTAATAGAAAATTACACTTATAACGCCAACTTAAATG 175 ************************************ ** * *** ************* consensus_9613#0 AACATCTGAGAAGTGTTCATACAGGAGTGAGGTTTGCTTGTGAACAATGCGATAGAAAAT 719 consensus_9613#1 AACATCTGAGAAGTGTTCATACAGGAGTGAGGTTTGCTTGTGAACAATGCGATAGAAAAT 235 ************************************************************ consensus_9613#0 ATATACAAAGAAGTGGGCTGAATAGACATATTAAAATGGTTCACGAAGGAGCAGAATTTT 779 consensus_9613#1 ATATACAAAGAAGTGGGCTGAATAGACATAT----------------------------- 266 ******************************* consensus_9613#0 CATGTGTCTAGCACGAATATATAGCCTATTGAAAGATGTCCACTGAAAGAATCATACATG 839 consensus_9613#1 ------------------------------------------------------------ consensus_9613#0 CAAAGCTATCTTCACTATTTACTGACTGGTTTTTGGAAGTCTTCGTTATCCAGCCCTTAG 899 consensus_9613#1 ------------------------------------------------------------ consensus_9613#0 ATGTAATGTTGTTAAAACAAAAAAAATACTCATTATCCACACAATCATTATAAGACAATA 959 consensus_9613#1 ------------------------------------------------------------ consensus_9613#0 AAACAAACTTTAGTTTCTCATTTGGTTCAATAACCTTTCCTCTTTGTATGCTTATCAGAA 1019 consensus_9613#1 ------------------------------------------------------------ consensus_9613#0 GTACCTTTTGTATAATATTTATTTTTTAATTGTTTTTACTTTATATAATCTTCACTGTAC 1079 consensus_9613#1 ------------------------------------------------------------ consensus_9613#0 AAATGAAGTTATTATTTTTTACTGAGTTTGTAGTTGCTATTCTGCGTTCTATTTACATAT 1139 consensus_9613#1 ------------------------------------------------------------ consensus_9613#0 GCATGGGTAACGTATGCAATATTCTTTCTTATTTCATAAATCCGTACAAATCATATCATT 1199 consensus_9613#1 ------------------------------------------------------------ consensus_9613#0 TCGAAGCGTATTGACTTTCAACTAACTATTTTGCCAGCTACGACATTTTGATCCGGCGTT 1259 consensus_9613#1 ------------------------------------------------------------ consensus_9613#0 GTCAATCGTATTCGATTGTAAAACAGTATTAGTCCAGGAAGTAAATGAAATTAATGGAGA 1319 consensus_9613#1 ------------------------------------------------------------ consensus_9613#0 TGAAGAAAAATGGAAGTCAGATTCAGCTATGATTGTAGTAGATTGATTGATCACGTTATA 1379 consensus_9613#1 ------------------------------------------------------------ consensus_9613#0 TATGTGTAATGTAAGTGTAGTAGAACACAAATATCTGAAATTGTGTCAAAAAAAACAAAC 1439 consensus_9613#1 ------------------------------------------------------------ consensus_9613#0 CCCTAATTAGTTATGTCAAATGTAGCTTCTTGAAAATAAATATGTTGTTTTT 1491 consensus_9613#1 ---------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||