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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9614#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 822 fasta sequence
[GCGGAAGAGATATATTATATGACAAGAGTTGTGCGTGGCCTGTCTGGCATTCGTCGACGACTCAATTGTAATGTTTTGAGAGGCTTGATGCAAGGGTACTTCCCAAATCCTTCTCCACAAAAGACTTATTTTTTGGAGTTTCTTCCTGAGGCAATGGACACTGACTGTCTATTATCTTCGTTCCGTCCTCGTGCCGGAAAGCTTAACACTCCATTAATACCGGAGGTGGAGGTATACTTGCATCTACTTCTTGTGATGTTTTTGATTGATGAAAACCACCTAGAAGAGGCATGCAAATGTTCCAACCTCCTAATGGATCGTTTAAGTGCCACTGGTCGACGCTCTATGGCACTCCTTGCAAGTCGGTGTTATTATTACCACAGTCGTAGCTACGAACTTGTTGGACGCTTGGATTCTGTACGATCA-TTTTTTCATGCTCGTTTATCAACGGCTACTCTTAGATCAAATTTTGATACTAAAGCTGTGCTAATTAACTTATTATTGCGCAACTATTTGCATTATCAATTGCATGAACAAGCACATAAACTTGTCTCACGTGTAGTATTCCCGGAAAGTGCGCCAAATAACGAATGGGCTAGATATTTGTATTATTTAGGTAGAATCAAGGCAATCCAATTAGACTATTCGTCAGCTCATGAACATCTAGTCTCTGCTTTGCGTAAAGCTCCTCAACACACAGCCACTGGTTTTAAACAAACCTTACACAAATTAAATACAGTTGTAGAATTATTGCTAGGTGAACAGCCAGATCGTTCTATATTTCGTCAAACGACATTTAAAGCTGCTCTACAACCATATTTT]
[+] EMBL CD131783 [GCGGAAGAGATATATTATATGACAAGAGTTGTGCGTGGCCTGTCTGGCATTCGTCGACGACTCAATTGTAATGTTTTGAGAGGCTTGATGCAAGGGTACTTCCCAAATCCTTCTCCACAAAAGACTTATTTTTTGGAGTTTCTTCCTGAGGCAATGGACACTGACTGTCTATTATCTTCGTTCCGTCCTCGTGCCGGAAAGCTTAACACTCCATTAATACCGGAGGTGGAGGTATACTTGCATCTACTTCTTGTGATGTTTTTGATTGATGAAAATCACCTAGAAGAGGCATGCAAATGTTCCAACCTCCTAATGGATCGTTTAAG ]
[+] EMBL CD189089 [ ACGACTCAATTGTAATGTTTTGAGAGGCTTGATGCAAGGGTACTTCCCAAATCCTTCTCCACAAAAGACTTATTTTTTGGAGTTTCTTCCTGAGGCAATGGACACTGACTGTCTATTATCTTCGTTCCGTCCTCGTGCCGGAAAGCTTAACACTCCATTAATACCGGAGGTGGAGGTATACTTGCATCTACTTCTTGTGATGTTTTTGATTGATGAAAACCACCTAGAAGAGGCATGCAAATGTTCCAACCTCCTAATGGATCGTTTAAGTGCCACTGGTCGACGCTCTATGGCACTCCTTGCAAGTCGGTGTTATTATTACCACAGTCGTAGCTACGAACTTGTTGGACGCTTGGATTCTGTACGATCA TTTTTTCATGCTCGTTTATCAACGGCTACTCTTAGATCAAATTTTGATACTAAAGCTGTGCTAATTAACTTATTATTGCGCAACTATTTGCATTATCAATTGCATGAACAAGCACATAAACTTGTCTCACGTGTAG ]
[+] EMBL CD166361 [ CCAATTCCTTCTCCACAAAAGACTTATTTTTTGGAGTTTCTTCCTGAGGCAATGGACACTGACTGTCTATTATCTTCGTTCCGTCCTCGTGCCGGAAAGCTTAACACTCCATTAATACCGGAGGTGGAGGTATACTTGCATCTACTTCTTGTGATGTTTTTGATTGATGAAAACCACCTAAAAGAGGCATGCAAATGTTCCAACCTCCTAATGGATCGTTTAAGTGCCACTGGTCGACGCTCTATGGCACTCCTTGCAAGTCGGTGTTATTATTACCACAGTCGTAGCTACAAACTTGTTGGACGCTTGGATTCTGTACGATCATTTTTTTCATGCTCGTTTATCAACGGCTACTCTTAGATCAAATTTTGATACTAAAGCTGTGCTAATTAACTTATTATTGCGCAACTATTTGCATTATCAATTGCATGAACAAGCACATAAACTTGTCTCACGTGTAGTATTCCCGGAAAGTGCGCCAAATAACGAATGGGCTAGATAT ]
[-] EMBL CD152294 [ CCTCGTGCCGGAAAGCCTAACACTCCA TAATACCGGAGGTGGAGGTATACTTGCATCTACTTCTTGTGATGTTTTTGATTGATGAAAACCACCTAGAAGAGGCATGCAAATGTTCCAACCTCCTAATGGATCGTTTAAGTGCCACTGGTCGACGCTCTATGGCACTCCTTGCAAGTCGGTGTTATTATTACCACAGTCGTAGCTACGAACTTGTTGGACGCTTGGATTCTGTACGATCA TTTTTTCATGCTCGTTTATCAACGGCTACTCTTAGATCAAATTTTGATACTAAAGCTGTGCTAATTAACTTATTATTGCGCAACTATTTGCATTATCAATTGCATGAACAAGCACATAAACTTGTCTCACGTGTAGTATTCCCGGAAAGTGCGCCAAATAACGAATGGGCTAGATATTTGTATTATTTAGGTAGAATCAAGGCAATCCAATTAGACTATTCGTCAGCTCATGAACATCTAGTCTCTGCTTT ]
[-] EMBL CD121050 [ TATCAACGGCTACTCTTAGATCAAATTTTGATACTAAAGCTGTGCTAATTAACTTATTATTGCGCAACTATTTGCATTATCAATTGCATGAACAAGCACATAAACTTGTCTCACGTGTAGTATTCCCGGAAAGTGCGCCAAATAACGAATGGGCTAGATATTTGTATTATTTAGGTAGAATCAAGGCAATCCAATTAGACTATTCGTCAGCTCATGAACATCTAGTCTCTGCTTTGCGTAAAGCTCCTCAACACACAGCCACTGGTTTTAAACAAACCTTACACAAATTAAATACAGTTGTAGAATTATTGCTAGGTGAACAGCCAGATCGTTCTATATTTCGTCAAACGACATTTAAAGCTGCTCTACAACCATATTTT]
consensusID : consensus_9614#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 695 fasta sequence
[TCTGGCACGTTTAACGAATGGGCTAGATATTTGTATTATTTAGGTAGAATCAAGGCAATCCAATTAGACTATTCGTCAGCTCATGAACATCTAGTCTCTGCTTTGCGTAAAGCTCCTCGACACACAGCCACTGGTTTTAAACAAACCTTACACAAATTAAATACAGTTGTAGAATTATTGCTAGGTGAACAGCCAGATCGTTCTATATTTCGTCAAACGACATTTAAAGCTGCTCTGCAACCATATTTTCAGCTAACTCAAGCAATTCATGCAGGAGATTTATCTCGATTTAACGATACCCTTCGAGTTCATGGAGCTCAGTTTTCAGCTGACAAAATGTATACTCTAATTATTCGATTACGTCATAATGTCATTAAAACCGGTGTTCGACGAATATCCTTAAGCTATTCTAGAATTTCTCTAGCAGATATCGCCAAAAAACTCCAACTGGACAGTGTCGAAGATGCAGAATACATAGTTGCAAAGGCTATTCGCGATGGTGTGATTGATGCTATAATTAATCATANAGAAGGTCATGTAACTACAAATGAAACGTTAGATNTATATTCAACACGTGAACCTTTTTAATCAGTTTTACCAAACGTATTAAATTTTGCCTCAGCATACATAATCAAGCCGTCAAAGCAATGCGTTATCCCCCGAAAACATACTCTTAAGATATTGGATCTGCTGAA]
[+] EMBL CD115670 [TCTGGCACGTTTAACGAATGGGCTAGATATTTGTATTATTTAGGTAGAATCAAGGCAATCCAATTAGACTATTCGTCAGCTCATGAACATCTAGTCTCTGCTTTGCGTAAAGCTCCTCGACACACAGCCACTGGTTTTAAACAAACCTTACACAAATTAAATACAGTTGTAGAATTATTGCTAGGTGAACAGCCAGATCGTTCTATATTTCGTCAAACGACATTTAAAGCTGCTCTGCAACCATATTTTCAGCTAACTCAAGCAATTCATGCAGGAGATTTATCTCGATTTAACGATACCCTTCGAGTTCATGGAGCTCAGTTTTCAGCTGACAAAATGTATACTCTAATTATTCGATTACGTCATAATGTCATTAAAACCGGTGTTCGACGAATATCCTTAAGCTATTCTAGAATTTCTCTAGCAGATATCGCCAAAAAACTCCAACTGGACAGTGTCGAAGATGCAGAATACATAGTTGCAAAGGCTATTCGCGATGGTGTGATTGATGCTATAATTAATCATANAGAAGGTCATGTAACTACAAATGAAACGTTAGATNTATATTCAACACGTGAACCTTTTTAATCAGTTTTACCAAACGTATTAAATTTTGCCTCAGCATACATAATCAAGCCGTCAAAGCAATGCGTTATCCCCCGAAAACATACTCTTAAGATATTGGATCTGCTGAA]
[-] EMBL CD144419 [ ACAAACCTTACACAAATTAAATACAGTTGTAGAATTATGGCTAGGTGAACAGCCAGATCGTTCTATATTTCGTCAAACGACATTTAAAGCTGCTCTACAACCATATTTTCAGCTAACTCAAGCAATTCATGCAGGAGATTTATCTCGATTTAACGATACCCTTCGAGTTCATGGAGCTCAGTTTTCAGCTGACAAAATGTATACTCTAATTATTCGATTACGTCATAATGTCATTAAAACCGGTGTTCGACGAATATCCTTAAGCTATTCTAGAATTTCTCTAGCAGATATCGCCAAAAAACTCC ]
[-] EMBL CD163779 [ TATCTCGATTTAACGATACCCTTCGAGTTCATGGAGCTCAGTTTTCAGCTGACAAAATGTATACTCTAATTATTCGATTACGTCATAATGTCATTAAAACCGGTGTTCGACGAATATCCTTAAGCTATTCTAGAATTTCTCTAGCAGATATCGCCAAAAAACTCCAACTGGACAGTGTCGAAGATGCAGAATACATAGTTGCAAAGGCTATTCGCGATGGTGTGATTGATGCTATAATTAATCGTAAAGAAGGTCATGTAACTACAAATGAAACGTTAGATTTATATTCAACACGTGAACC TTTTAATCAGTTTCACC AACGTATTAAATTTTGCCTCAGCATA ]
consensusID : consensus_9614#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 600 fasta sequence
[AAACGACAGTGGCGCTACAGCTGACTTAGCATACCAACAGGAAATGAAAAGTGGGACTCAGCAACTTCCTGAGAATGATATGGGTCCCCTAGCGGCTTCAGATAAGTTAATAGATGGGTCGCCCAGTGAAAATCTGAACGATGCAGACGAGTTATTATTAGAAGATATCCGTGATCAGATCCGATATATTGAAGAATCTGTAATGACCAAAGAGATATATTATATGACAAGAGTTGTGCGTGGCCTGTCTGGCATTCGTCGACGACTCAATTGTAATGTTTTGAGAGGCTTGATGCAAGGGTACTTCCCAAATCCTTCTCCACAAAAGACTTATTTTTTGGAGTTTCTTCCTGAGGTTTGTTCTCAGTTGTACTACTAGATTTTAGGCAATGGACACTGACTGTCTATTATCTTCGTTCCGTCCTCGTGCCGGAAAGCTTAACACTCCATTAATACCGGAGGTGGAGGTATACTTGCATCTACTTCTTGTGATGTTTTTGATTGATGAAAATCACCTAGAAGAGGCATGCAAATGTTCCAACCTCCTAATGGATCCGTAAGTGCCACTGGTCGACGCTCTATGGCACTCCTTGCAAGTCG]
[+] EMBL CD111418 [AAACGACAGTGGCGCTACAGCTGACTTAGCATACCAACAGGAAATGAAAAGTGGGACTCAGCAACTTCCTGAGAATGATATGGGTCCCCTAGCGGCTTCAGATAAGTTAATAGATGGGTCGCCCAGTGAAAATCTGAACGATGCAGACGAGTTATTATTAGAAGATATCCGTGATCAGATCCGATATATTGAAGAATCTGTAATGACCAAAGAGATA ]
[+] EMBL AI975423 [ ATACCAACAGGAAATGAAAAGTGGGACTCAGCAACTTCCTGAGAATGATATGGGTCCCCTAGCGGCTTCAGATAAGTTAATAGATGGGTCGCCCAGTGAAAATCTGAAGGATGCAGACGAGTTATTATTAGAAGATATCCGTGATCAGATCCGATATATTGAAAAATCTGTAATGACCAAAGAGATATATTATATGACAAGAGTTGTGCGTGGCCTGTCTGGCATTCGTCGACGACTCAATTGTAATGTTTTGAGAGGCTTGATGCAAGGGTACTTCCCAAATCCTTCTCCACAAAAGACTTATTTTTTGGAGTTTCTTCCTGAGGTTTGTTCTCAGTTGTACTACTAGATTTTAGGCAATGGACACTGACTGTCTATTATCTTCGTTCCGTCCTCGTGCCGGAAAGCTTAACACTCCATTAATACCGGAGGTGGAGGTATACTTGCATCTACTTCTTGTGATGTTTTTGATTGATGAAAATCACCTAGAAGAGGCATGCAAATGTTCCAACCTCCTAATGGATCCGTAAGTGCCACTGGTCGACGCTCTATGGCACTCCTTGCAAGTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9614#0 ------------------------------------------------------------
consensus_9614#2 AAACGACAGTGGCGCTACAGCTGACTTAGCATACCAACAGGAAATGAAAAGTGGGACTCA 60
consensus_9614#1 ---------------TCTGGCACGTTTAACGAATGGGCTAGATATTTGTATTA--TTTAG 43
consensus_9614#0 ------------------------------------------------------------
consensus_9614#2 GCAACTTCCTGAGAATGATATGGGTCCCCTAG-CGGCTTCAGATAAGTTAATAGATGGGT 119
consensus_9614#1 GTAGAATCAAGGCAATCCAATTAGACTATTCGTCAGCTCATGAACATCTAGTCTCTGCTT 103
consensus_9614#0 ------------------------------------------------------------
consensus_9614#2 CGCCCAGTGAAAATCTGAACGATGCAGACGAGTTATTATTAGAAGATATCCGTGATCAGA 179
consensus_9614#1 TGCGTAAAGCTCCTCGACACACAGCC-ACTGGTTTTAAACAAACCTTACACA-AATTAAA 161
consensus_9614#0 -------------------------------GCGGAAGAGATATATTATATGACAAGAGT 29
consensus_9614#2 TCCGATATATTGAAGAATCTGTA-----ATGACCAAAGAGATATATTATATGACAAGAGT 234
consensus_9614#1 TACAGT-TGTAGAATTATTGCTAGGTGAACAGCCAGATCGTTCTATATTTCGTCAAACGA 220
* * * * *** * * *** *
consensus_9614#0 TGTGCGTGGCCTGTCTG-----GCATTCGTCGACGACTCAATTGTAATGTTTTGAGAGG- 83
consensus_9614#2 TGTGCGTGGCCTGTCTG-----GCATTCGTCGACGACTCAATTGTAATGTTTTGAGAGG- 288
consensus_9614#1 CATTTAAAGCTGCTCTGCAACCATATTTTCAGCTAACTCAA--GCAATTCATGCAGGAGA 278
* ** **** *** * ****** * *** * ** *
consensus_9614#0 -----CTTGATGCAAGGGTACTTCCCAAATCC-----------TTCTCCACAAAAGACTT 127
consensus_9614#2 -----CTTGATGCAAGGGTACTTCCCAAATCC-----------TTCTCCACAAAAGACTT 332
consensus_9614#1 TTTATCTCGATTTAACGATACCCTTCGAGTTCATGGAGCTCAGTTTTCAGCTGACAAAAT 338
** *** ** * *** * * * * ** ** * * * *
consensus_9614#0 ATTTTTTGGAGTTTCTTCCTGAGG-------------------------------CAATG 156
consensus_9614#2 ATTTTTTGGAGTTTCTTCCTGAGGTTTGTTCTCAGTTGTACTACTAGATTTTAGGCAATG 392
consensus_9614#1 GTATACTCTAATTATTCGATTACGTCATAATGTCATTAAA--ACCGGTGTTCGACGAATA 396
* * * * ** * * * * ***
consensus_9614#0 GACACTGACTGTCTATTATCTTCGTTCCGTCCTCGTGCCGGAAAGCTTAACACTCCATTA 216
consensus_9614#2 GACACTGACTGTCTATTATCTTCGTTCCGTCCTCGTGCCGGAAAGCTTAACACTCCATTA 452
consensus_9614#1 TCCTTAAGCTATTCTAGAATTTCTCTAGCAGATATCGCCAAAAAACTC--CAACTGGACA 454
* ** * * *** * * *** *** ** ** *
consensus_9614#0 ATACCGGAGGTGGAGG---TATACTTGCATCTACTTCTTGTGATGTTTTTGATTGATG-- 271
consensus_9614#2 ATACCGGAGGTGGAGG---TATACTTGCATCTACTTCTTGTGATGTTTTTGATTGATG-- 507
consensus_9614#1 GTGTCGAAGATGCAGAATACATAGTTGCAAAGGCTATTCGCGATGGTGT-GATTGATGCT 513
* ** ** ** ** *** ***** ** * * **** * * ********
consensus_9614#0 AAAACCA--CCTAGAAGAGG-CATGCAAATGTTCCAACCTCCTAATGGATCGTTTAAGTG 328
consensus_9614#2 AAAATCA--CCTAGAAGAGG-CATGCAAATGTTCCAACCTCCTAATGGATC-CGTAAGTG 563
consensus_9614#1 ATAATTAATCATANAGAAGGTCATGTAACTA--CAAATGAAACGTTAGATN---TATATT 568
* ** * * ** * *** **** ** * * ** * *** ** *
consensus_9614#0 CCACTGGTCGACGCTCTATGGCACTCCTTGCAAGTCGGTGTTATTATTACCACAGTCGTA 388
consensus_9614#2 CCACTGGTCGACGCTCTATGGCACTCCTTGCAAGTCG----------------------- 600
consensus_9614#1 CAACACGTGAAC-CTTTTTAATCAGTTTTACCAAACGTATTAAATTTTGCCTCAGCATAC 627
* ** ** ** ** * * ** * * **
consensus_9614#0 GCTACGAACTTGTTGGACGCTTGGATTCTGTACGATCATTTTTTCATGCTCGTTTATCAA 448
consensus_9614#2 ------------------------------------------------------------
consensus_9614#1 ATAATCAAGCCGTCAAAGCAATGCGTTATCCCCCGAAAACATACTCTTAAGATATTGGAT 687
consensus_9614#0 CGGCTACTCTTAGATCAAATTTTGATACTAAAGCTGTGCTAATTAACTTATTATTGCGCA 508
consensus_9614#2 ------------------------------------------------------------
consensus_9614#1 CTGCTGAA---------------------------------------------------- 695
consensus_9614#0 ACTATTTGCATTATCAATTGCATGAACAAGCACATAAACTTGTCTCACGTGTAGTATTCC 568
consensus_9614#2 ------------------------------------------------------------
consensus_9614#1 ------------------------------------------------------------
consensus_9614#0 CGGAAAGTGCGCCAAATAACGAATGGGCTAGATATTTGTATTATTTAGGTAGAATCAAGG 628
consensus_9614#2 ------------------------------------------------------------
consensus_9614#1 ------------------------------------------------------------
consensus_9614#0 CAATCCAATTAGACTATTCGTCAGCTCATGAACATCTAGTCTCTGCTTTGCGTAAAGCTC 688
consensus_9614#2 ------------------------------------------------------------
consensus_9614#1 ------------------------------------------------------------
consensus_9614#0 CTCAACACACAGCCACTGGTTTTAAACAAACCTTACACAAATTAAATACAGTTGTAGAAT 748
consensus_9614#2 ------------------------------------------------------------
consensus_9614#1 ------------------------------------------------------------
consensus_9614#0 TATTGCTAGGTGAACAGCCAGATCGTTCTATATTTCGTCAAACGACATTTAAAGCTGCTC 808
consensus_9614#2 ------------------------------------------------------------
consensus_9614#1 ------------------------------------------------------------
consensus_9614#0 TACAACCATATTTT 822
consensus_9614#2 --------------
consensus_9614#1 --------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||