These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9614#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 822 fasta sequence [GCGGAAGAGATATATTATATGACAAGAGTTGTGCGTGGCCTGTCTGGCATTCGTCGACGACTCAATTGTAATGTTTTGAGAGGCTTGATGCAAGGGTACTTCCCAAATCCTTCTCCACAAAAGACTTATTTTTTGGAGTTTCTTCCTGAGGCAATGGACACTGACTGTCTATTATCTTCGTTCCGTCCTCGTGCCGGAAAGCTTAACACTCCATTAATACCGGAGGTGGAGGTATACTTGCATCTACTTCTTGTGATGTTTTTGATTGATGAAAACCACCTAGAAGAGGCATGCAAATGTTCCAACCTCCTAATGGATCGTTTAAGTGCCACTGGTCGACGCTCTATGGCACTCCTTGCAAGTCGGTGTTATTATTACCACAGTCGTAGCTACGAACTTGTTGGACGCTTGGATTCTGTACGATCA-TTTTTTCATGCTCGTTTATCAACGGCTACTCTTAGATCAAATTTTGATACTAAAGCTGTGCTAATTAACTTATTATTGCGCAACTATTTGCATTATCAATTGCATGAACAAGCACATAAACTTGTCTCACGTGTAGTATTCCCGGAAAGTGCGCCAAATAACGAATGGGCTAGATATTTGTATTATTTAGGTAGAATCAAGGCAATCCAATTAGACTATTCGTCAGCTCATGAACATCTAGTCTCTGCTTTGCGTAAAGCTCCTCAACACACAGCCACTGGTTTTAAACAAACCTTACACAAATTAAATACAGTTGTAGAATTATTGCTAGGTGAACAGCCAGATCGTTCTATATTTCGTCAAACGACATTTAAAGCTGCTCTACAACCATATTTT] [+] EMBL CD131783 [GCGGAAGAGATATATTATATGACAAGAGTTGTGCGTGGCCTGTCTGGCATTCGTCGACGACTCAATTGTAATGTTTTGAGAGGCTTGATGCAAGGGTACTTCCCAAATCCTTCTCCACAAAAGACTTATTTTTTGGAGTTTCTTCCTGAGGCAATGGACACTGACTGTCTATTATCTTCGTTCCGTCCTCGTGCCGGAAAGCTTAACACTCCATTAATACCGGAGGTGGAGGTATACTTGCATCTACTTCTTGTGATGTTTTTGATTGATGAAAATCACCTAGAAGAGGCATGCAAATGTTCCAACCTCCTAATGGATCGTTTAAG ] [+] EMBL CD189089 [ ACGACTCAATTGTAATGTTTTGAGAGGCTTGATGCAAGGGTACTTCCCAAATCCTTCTCCACAAAAGACTTATTTTTTGGAGTTTCTTCCTGAGGCAATGGACACTGACTGTCTATTATCTTCGTTCCGTCCTCGTGCCGGAAAGCTTAACACTCCATTAATACCGGAGGTGGAGGTATACTTGCATCTACTTCTTGTGATGTTTTTGATTGATGAAAACCACCTAGAAGAGGCATGCAAATGTTCCAACCTCCTAATGGATCGTTTAAGTGCCACTGGTCGACGCTCTATGGCACTCCTTGCAAGTCGGTGTTATTATTACCACAGTCGTAGCTACGAACTTGTTGGACGCTTGGATTCTGTACGATCA TTTTTTCATGCTCGTTTATCAACGGCTACTCTTAGATCAAATTTTGATACTAAAGCTGTGCTAATTAACTTATTATTGCGCAACTATTTGCATTATCAATTGCATGAACAAGCACATAAACTTGTCTCACGTGTAG ] [+] EMBL CD166361 [ CCAATTCCTTCTCCACAAAAGACTTATTTTTTGGAGTTTCTTCCTGAGGCAATGGACACTGACTGTCTATTATCTTCGTTCCGTCCTCGTGCCGGAAAGCTTAACACTCCATTAATACCGGAGGTGGAGGTATACTTGCATCTACTTCTTGTGATGTTTTTGATTGATGAAAACCACCTAAAAGAGGCATGCAAATGTTCCAACCTCCTAATGGATCGTTTAAGTGCCACTGGTCGACGCTCTATGGCACTCCTTGCAAGTCGGTGTTATTATTACCACAGTCGTAGCTACAAACTTGTTGGACGCTTGGATTCTGTACGATCATTTTTTTCATGCTCGTTTATCAACGGCTACTCTTAGATCAAATTTTGATACTAAAGCTGTGCTAATTAACTTATTATTGCGCAACTATTTGCATTATCAATTGCATGAACAAGCACATAAACTTGTCTCACGTGTAGTATTCCCGGAAAGTGCGCCAAATAACGAATGGGCTAGATAT ] [-] EMBL CD152294 [ CCTCGTGCCGGAAAGCCTAACACTCCA TAATACCGGAGGTGGAGGTATACTTGCATCTACTTCTTGTGATGTTTTTGATTGATGAAAACCACCTAGAAGAGGCATGCAAATGTTCCAACCTCCTAATGGATCGTTTAAGTGCCACTGGTCGACGCTCTATGGCACTCCTTGCAAGTCGGTGTTATTATTACCACAGTCGTAGCTACGAACTTGTTGGACGCTTGGATTCTGTACGATCA TTTTTTCATGCTCGTTTATCAACGGCTACTCTTAGATCAAATTTTGATACTAAAGCTGTGCTAATTAACTTATTATTGCGCAACTATTTGCATTATCAATTGCATGAACAAGCACATAAACTTGTCTCACGTGTAGTATTCCCGGAAAGTGCGCCAAATAACGAATGGGCTAGATATTTGTATTATTTAGGTAGAATCAAGGCAATCCAATTAGACTATTCGTCAGCTCATGAACATCTAGTCTCTGCTTT ] [-] EMBL CD121050 [ TATCAACGGCTACTCTTAGATCAAATTTTGATACTAAAGCTGTGCTAATTAACTTATTATTGCGCAACTATTTGCATTATCAATTGCATGAACAAGCACATAAACTTGTCTCACGTGTAGTATTCCCGGAAAGTGCGCCAAATAACGAATGGGCTAGATATTTGTATTATTTAGGTAGAATCAAGGCAATCCAATTAGACTATTCGTCAGCTCATGAACATCTAGTCTCTGCTTTGCGTAAAGCTCCTCAACACACAGCCACTGGTTTTAAACAAACCTTACACAAATTAAATACAGTTGTAGAATTATTGCTAGGTGAACAGCCAGATCGTTCTATATTTCGTCAAACGACATTTAAAGCTGCTCTACAACCATATTTT] consensusID : consensus_9614#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 695 fasta sequence [TCTGGCACGTTTAACGAATGGGCTAGATATTTGTATTATTTAGGTAGAATCAAGGCAATCCAATTAGACTATTCGTCAGCTCATGAACATCTAGTCTCTGCTTTGCGTAAAGCTCCTCGACACACAGCCACTGGTTTTAAACAAACCTTACACAAATTAAATACAGTTGTAGAATTATTGCTAGGTGAACAGCCAGATCGTTCTATATTTCGTCAAACGACATTTAAAGCTGCTCTGCAACCATATTTTCAGCTAACTCAAGCAATTCATGCAGGAGATTTATCTCGATTTAACGATACCCTTCGAGTTCATGGAGCTCAGTTTTCAGCTGACAAAATGTATACTCTAATTATTCGATTACGTCATAATGTCATTAAAACCGGTGTTCGACGAATATCCTTAAGCTATTCTAGAATTTCTCTAGCAGATATCGCCAAAAAACTCCAACTGGACAGTGTCGAAGATGCAGAATACATAGTTGCAAAGGCTATTCGCGATGGTGTGATTGATGCTATAATTAATCATANAGAAGGTCATGTAACTACAAATGAAACGTTAGATNTATATTCAACACGTGAACCTTTTTAATCAGTTTTACCAAACGTATTAAATTTTGCCTCAGCATACATAATCAAGCCGTCAAAGCAATGCGTTATCCCCCGAAAACATACTCTTAAGATATTGGATCTGCTGAA] [+] EMBL CD115670 [TCTGGCACGTTTAACGAATGGGCTAGATATTTGTATTATTTAGGTAGAATCAAGGCAATCCAATTAGACTATTCGTCAGCTCATGAACATCTAGTCTCTGCTTTGCGTAAAGCTCCTCGACACACAGCCACTGGTTTTAAACAAACCTTACACAAATTAAATACAGTTGTAGAATTATTGCTAGGTGAACAGCCAGATCGTTCTATATTTCGTCAAACGACATTTAAAGCTGCTCTGCAACCATATTTTCAGCTAACTCAAGCAATTCATGCAGGAGATTTATCTCGATTTAACGATACCCTTCGAGTTCATGGAGCTCAGTTTTCAGCTGACAAAATGTATACTCTAATTATTCGATTACGTCATAATGTCATTAAAACCGGTGTTCGACGAATATCCTTAAGCTATTCTAGAATTTCTCTAGCAGATATCGCCAAAAAACTCCAACTGGACAGTGTCGAAGATGCAGAATACATAGTTGCAAAGGCTATTCGCGATGGTGTGATTGATGCTATAATTAATCATANAGAAGGTCATGTAACTACAAATGAAACGTTAGATNTATATTCAACACGTGAACCTTTTTAATCAGTTTTACCAAACGTATTAAATTTTGCCTCAGCATACATAATCAAGCCGTCAAAGCAATGCGTTATCCCCCGAAAACATACTCTTAAGATATTGGATCTGCTGAA] [-] EMBL CD144419 [ ACAAACCTTACACAAATTAAATACAGTTGTAGAATTATGGCTAGGTGAACAGCCAGATCGTTCTATATTTCGTCAAACGACATTTAAAGCTGCTCTACAACCATATTTTCAGCTAACTCAAGCAATTCATGCAGGAGATTTATCTCGATTTAACGATACCCTTCGAGTTCATGGAGCTCAGTTTTCAGCTGACAAAATGTATACTCTAATTATTCGATTACGTCATAATGTCATTAAAACCGGTGTTCGACGAATATCCTTAAGCTATTCTAGAATTTCTCTAGCAGATATCGCCAAAAAACTCC ] [-] EMBL CD163779 [ TATCTCGATTTAACGATACCCTTCGAGTTCATGGAGCTCAGTTTTCAGCTGACAAAATGTATACTCTAATTATTCGATTACGTCATAATGTCATTAAAACCGGTGTTCGACGAATATCCTTAAGCTATTCTAGAATTTCTCTAGCAGATATCGCCAAAAAACTCCAACTGGACAGTGTCGAAGATGCAGAATACATAGTTGCAAAGGCTATTCGCGATGGTGTGATTGATGCTATAATTAATCGTAAAGAAGGTCATGTAACTACAAATGAAACGTTAGATTTATATTCAACACGTGAACC TTTTAATCAGTTTCACC AACGTATTAAATTTTGCCTCAGCATA ] consensusID : consensus_9614#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 600 fasta sequence [AAACGACAGTGGCGCTACAGCTGACTTAGCATACCAACAGGAAATGAAAAGTGGGACTCAGCAACTTCCTGAGAATGATATGGGTCCCCTAGCGGCTTCAGATAAGTTAATAGATGGGTCGCCCAGTGAAAATCTGAACGATGCAGACGAGTTATTATTAGAAGATATCCGTGATCAGATCCGATATATTGAAGAATCTGTAATGACCAAAGAGATATATTATATGACAAGAGTTGTGCGTGGCCTGTCTGGCATTCGTCGACGACTCAATTGTAATGTTTTGAGAGGCTTGATGCAAGGGTACTTCCCAAATCCTTCTCCACAAAAGACTTATTTTTTGGAGTTTCTTCCTGAGGTTTGTTCTCAGTTGTACTACTAGATTTTAGGCAATGGACACTGACTGTCTATTATCTTCGTTCCGTCCTCGTGCCGGAAAGCTTAACACTCCATTAATACCGGAGGTGGAGGTATACTTGCATCTACTTCTTGTGATGTTTTTGATTGATGAAAATCACCTAGAAGAGGCATGCAAATGTTCCAACCTCCTAATGGATCCGTAAGTGCCACTGGTCGACGCTCTATGGCACTCCTTGCAAGTCG] [+] EMBL CD111418 [AAACGACAGTGGCGCTACAGCTGACTTAGCATACCAACAGGAAATGAAAAGTGGGACTCAGCAACTTCCTGAGAATGATATGGGTCCCCTAGCGGCTTCAGATAAGTTAATAGATGGGTCGCCCAGTGAAAATCTGAACGATGCAGACGAGTTATTATTAGAAGATATCCGTGATCAGATCCGATATATTGAAGAATCTGTAATGACCAAAGAGATA ] [+] EMBL AI975423 [ ATACCAACAGGAAATGAAAAGTGGGACTCAGCAACTTCCTGAGAATGATATGGGTCCCCTAGCGGCTTCAGATAAGTTAATAGATGGGTCGCCCAGTGAAAATCTGAAGGATGCAGACGAGTTATTATTAGAAGATATCCGTGATCAGATCCGATATATTGAAAAATCTGTAATGACCAAAGAGATATATTATATGACAAGAGTTGTGCGTGGCCTGTCTGGCATTCGTCGACGACTCAATTGTAATGTTTTGAGAGGCTTGATGCAAGGGTACTTCCCAAATCCTTCTCCACAAAAGACTTATTTTTTGGAGTTTCTTCCTGAGGTTTGTTCTCAGTTGTACTACTAGATTTTAGGCAATGGACACTGACTGTCTATTATCTTCGTTCCGTCCTCGTGCCGGAAAGCTTAACACTCCATTAATACCGGAGGTGGAGGTATACTTGCATCTACTTCTTGTGATGTTTTTGATTGATGAAAATCACCTAGAAGAGGCATGCAAATGTTCCAACCTCCTAATGGATCCGTAAGTGCCACTGGTCGACGCTCTATGGCACTCCTTGCAAGTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9614#0 ------------------------------------------------------------ consensus_9614#2 AAACGACAGTGGCGCTACAGCTGACTTAGCATACCAACAGGAAATGAAAAGTGGGACTCA 60 consensus_9614#1 ---------------TCTGGCACGTTTAACGAATGGGCTAGATATTTGTATTA--TTTAG 43 consensus_9614#0 ------------------------------------------------------------ consensus_9614#2 GCAACTTCCTGAGAATGATATGGGTCCCCTAG-CGGCTTCAGATAAGTTAATAGATGGGT 119 consensus_9614#1 GTAGAATCAAGGCAATCCAATTAGACTATTCGTCAGCTCATGAACATCTAGTCTCTGCTT 103 consensus_9614#0 ------------------------------------------------------------ consensus_9614#2 CGCCCAGTGAAAATCTGAACGATGCAGACGAGTTATTATTAGAAGATATCCGTGATCAGA 179 consensus_9614#1 TGCGTAAAGCTCCTCGACACACAGCC-ACTGGTTTTAAACAAACCTTACACA-AATTAAA 161 consensus_9614#0 -------------------------------GCGGAAGAGATATATTATATGACAAGAGT 29 consensus_9614#2 TCCGATATATTGAAGAATCTGTA-----ATGACCAAAGAGATATATTATATGACAAGAGT 234 consensus_9614#1 TACAGT-TGTAGAATTATTGCTAGGTGAACAGCCAGATCGTTCTATATTTCGTCAAACGA 220 * * * * *** * * *** * consensus_9614#0 TGTGCGTGGCCTGTCTG-----GCATTCGTCGACGACTCAATTGTAATGTTTTGAGAGG- 83 consensus_9614#2 TGTGCGTGGCCTGTCTG-----GCATTCGTCGACGACTCAATTGTAATGTTTTGAGAGG- 288 consensus_9614#1 CATTTAAAGCTGCTCTGCAACCATATTTTCAGCTAACTCAA--GCAATTCATGCAGGAGA 278 * ** **** *** * ****** * *** * ** * consensus_9614#0 -----CTTGATGCAAGGGTACTTCCCAAATCC-----------TTCTCCACAAAAGACTT 127 consensus_9614#2 -----CTTGATGCAAGGGTACTTCCCAAATCC-----------TTCTCCACAAAAGACTT 332 consensus_9614#1 TTTATCTCGATTTAACGATACCCTTCGAGTTCATGGAGCTCAGTTTTCAGCTGACAAAAT 338 ** *** ** * *** * * * * ** ** * * * * consensus_9614#0 ATTTTTTGGAGTTTCTTCCTGAGG-------------------------------CAATG 156 consensus_9614#2 ATTTTTTGGAGTTTCTTCCTGAGGTTTGTTCTCAGTTGTACTACTAGATTTTAGGCAATG 392 consensus_9614#1 GTATACTCTAATTATTCGATTACGTCATAATGTCATTAAA--ACCGGTGTTCGACGAATA 396 * * * * ** * * * * *** consensus_9614#0 GACACTGACTGTCTATTATCTTCGTTCCGTCCTCGTGCCGGAAAGCTTAACACTCCATTA 216 consensus_9614#2 GACACTGACTGTCTATTATCTTCGTTCCGTCCTCGTGCCGGAAAGCTTAACACTCCATTA 452 consensus_9614#1 TCCTTAAGCTATTCTAGAATTTCTCTAGCAGATATCGCCAAAAAACTC--CAACTGGACA 454 * ** * * *** * * *** *** ** ** * consensus_9614#0 ATACCGGAGGTGGAGG---TATACTTGCATCTACTTCTTGTGATGTTTTTGATTGATG-- 271 consensus_9614#2 ATACCGGAGGTGGAGG---TATACTTGCATCTACTTCTTGTGATGTTTTTGATTGATG-- 507 consensus_9614#1 GTGTCGAAGATGCAGAATACATAGTTGCAAAGGCTATTCGCGATGGTGT-GATTGATGCT 513 * ** ** ** ** *** ***** ** * * **** * * ******** consensus_9614#0 AAAACCA--CCTAGAAGAGG-CATGCAAATGTTCCAACCTCCTAATGGATCGTTTAAGTG 328 consensus_9614#2 AAAATCA--CCTAGAAGAGG-CATGCAAATGTTCCAACCTCCTAATGGATC-CGTAAGTG 563 consensus_9614#1 ATAATTAATCATANAGAAGGTCATGTAACTA--CAAATGAAACGTTAGATN---TATATT 568 * ** * * ** * *** **** ** * * ** * *** ** * consensus_9614#0 CCACTGGTCGACGCTCTATGGCACTCCTTGCAAGTCGGTGTTATTATTACCACAGTCGTA 388 consensus_9614#2 CCACTGGTCGACGCTCTATGGCACTCCTTGCAAGTCG----------------------- 600 consensus_9614#1 CAACACGTGAAC-CTTTTTAATCAGTTTTACCAAACGTATTAAATTTTGCCTCAGCATAC 627 * ** ** ** ** * * ** * * ** consensus_9614#0 GCTACGAACTTGTTGGACGCTTGGATTCTGTACGATCATTTTTTCATGCTCGTTTATCAA 448 consensus_9614#2 ------------------------------------------------------------ consensus_9614#1 ATAATCAAGCCGTCAAAGCAATGCGTTATCCCCCGAAAACATACTCTTAAGATATTGGAT 687 consensus_9614#0 CGGCTACTCTTAGATCAAATTTTGATACTAAAGCTGTGCTAATTAACTTATTATTGCGCA 508 consensus_9614#2 ------------------------------------------------------------ consensus_9614#1 CTGCTGAA---------------------------------------------------- 695 consensus_9614#0 ACTATTTGCATTATCAATTGCATGAACAAGCACATAAACTTGTCTCACGTGTAGTATTCC 568 consensus_9614#2 ------------------------------------------------------------ consensus_9614#1 ------------------------------------------------------------ consensus_9614#0 CGGAAAGTGCGCCAAATAACGAATGGGCTAGATATTTGTATTATTTAGGTAGAATCAAGG 628 consensus_9614#2 ------------------------------------------------------------ consensus_9614#1 ------------------------------------------------------------ consensus_9614#0 CAATCCAATTAGACTATTCGTCAGCTCATGAACATCTAGTCTCTGCTTTGCGTAAAGCTC 688 consensus_9614#2 ------------------------------------------------------------ consensus_9614#1 ------------------------------------------------------------ consensus_9614#0 CTCAACACACAGCCACTGGTTTTAAACAAACCTTACACAAATTAAATACAGTTGTAGAAT 748 consensus_9614#2 ------------------------------------------------------------ consensus_9614#1 ------------------------------------------------------------ consensus_9614#0 TATTGCTAGGTGAACAGCCAGATCGTTCTATATTTCGTCAAACGACATTTAAAGCTGCTC 808 consensus_9614#2 ------------------------------------------------------------ consensus_9614#1 ------------------------------------------------------------ consensus_9614#0 TACAACCATATTTT 822 consensus_9614#2 -------------- consensus_9614#1 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||