These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9615#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1243 fasta sequence [TCGGGCCAANATTCGGCACGAGGGTTCCAACCTATTTCGGAATAAAAGTTCCTTCACATCGTCCATCTGTCACTGGTTCTGTAACTTCATTGAAGTCGTCGAATTCCGGCACTGGTGTTTCCCATGGACTAGATAGCAGTACCATACCATTAAATGAACAATCATCTCAGAATGTTAACCAATTAATTGTTCCCAAAAAACCTGTTGGTGTTGACCATGATTCCGGTGTTCCTACTTGTCATTCAACTCAGTCTGCTATAACTTCCAGGATGTCAAATTTAAGTACTACTCCTATACTTCAACGAAAGAAAAATGCTGCTCCAAAACCACCAGTTCTTTTAAACCCAACCAATCATTCAATAACTCATGTGAGTAATAATGATCCTGAAAGATCGGAAAATCCCTCTGGCATTGACACGGAAAACAGAAATGATGGTGATAGTAACAGCATTTGTA-GCAGTAATAATTCAGAAGTATCAGTTCATCATTCTCATCATGAAAGTCTTCCACAACTTATCAATAGCTCAACCACTAGCTGCACAGAATTAACACCTAATGATCATATTCACAAATTGTCATTACCATCACAAATGATCACGTCACCAACTATTCAAGAAATGAAACTGAGTAGAGATCTACCTCCTAAACGACCCCCACCACCTGATGCTAACTCCAAGTCGAATAATTCTACATCAGAATTAGATACTGATAATGTAACTGTTATGTAGAATAATCGATTTGTGTTCAACTATGAGTGTGTCTGTTTTTTTTTCCTACTCAACAGAAATTATTATCAGTACTCTTCCACTTTTTTCGAAGTTTTTTTTCAAACGATTAAAAACTGCTGAATTTATGAAAACCCCTATTGATTGATTATGTTTGTAATACTTCTGACTACTACTTTTTTCATTTATAAGTAGTAATAGTAGTTTATTTATGAATTAAATGTGTAATTCTCCTCTCCTATCATTTGATATTGGTAACTTTTTCTAAATTCTCTATCATACATTTCCTGATACAAATCATTCATGTGTTTTGTTTTGTTTGTCAAAAGAAACTATAATATTTCTATTTATTACAATTTTGTAAACAATAAACAATATTTTGTTATGCATGATCATACATACATATGTATCCATTTACCAACTTCATCTATATTCGGCTTCATGTGTATCTCTAATGTACAACGACGTAAGTGAACAATGAATGTATGTTTAAATGANTTCACTAGATCGTTCTCAAT] [+] EMBL CD080443 [TCGGGCCAANATTCGGCACGAGGGTTCCAACCTATTTCGGAATAAAAGTTCCTTCACATCGTCCATCTGTCACTGGTTCTGTAACTTCATTGAAGTCGTCGAATTCCGGCACTGGTGTTTCCCATGGACTAGATAGCAGTACCATACCATTAAATGAACAATCATCTCAGAATGTTAACCAATTAATTGTTCCCAAAAAACCTGTTGGTGTTGACCATGATTCCGGTGTTCCTACTTGTCATTCAACTCAGTCTGCTATAACTTCCAGGATGTCAAATTTAAGTACTACTCCTATACTTCAACGAAAGAAAAATGCTGCTCCAAAACCACCAGTTCTTTTAAACCCAACCAATCATTCAATAACTCATGTGAGTAATAATGATCCTGAAAGATCGGAAAATCCCTCTGGCATTGACACGGAAAACAGAAATGATGGTGATAGTAACAGCATTTGTA GCAGTAATAATTCAGAAGTATCAGTTCATCATTCTCATCATGAAAGTCTTCCACAACTTATCAATAGCTCAACCACTAGCTGCACAGAATTAACACCTAATGATCATATTCACAAATTGTCATTACCATCACANATGATCACGTCACCAACTATTCAAGAAATGANACTGAGTAGAGATCTAC ] [+] EMBL CD070492 [ TCATTCAACTCAGTCTGCTATAACTTCCAGGATGTCAAATTTAAGTACTACTCCTATACTTCAACGAAAGAAAAATGCTGCTCCAAAACCACCAGTTCTTTTAAACCCAACCAATCATTCAATAACTCATGTGAGTAATAATGATCCTGAAAGATCGGAAAATCCCTCTGGCATTGACACGGAAAACAGAAATGATGGTGATAGTAACAGCATTTGTA GCAGTAATAATTCAGAAGTATCAGTTCATCATTCTCATCATGAAAGTCTTCCACAACTTATCAATAGCTCAACCACTAGC ] [-] EMBL CD155715 [ TCAATAACTCATGTGAGTAATAATGATCCTGAAAGATCGGAAAATCCCTCTGGCATTGACACGGAAAACAGAAATGATGGTGATAGTAACAGCATTTGTA GCAGTAATAATTCAGAAGTATCAGTTCATCATTCTCATCATGAAAGTCTTCCACAACTTATCAATAGCTCAACCACTAGCTGCACAGAATTAACACCTAATGATCATATTCACAAATTGTCATTACCATCACAAATGATCACGTCACCAACTATTCAAGAAATGAAACTGAGTA ] [+] EMBL CD192306 [ CAGAAATGATGGTGATAGTAACAGCATTTGTA GCAGTAATAATTCAGAAGTATCAGTTCATCATTCTCATCATGAAAGTCTTCCACAACTTATCAATAGCTCAACCACTAGCTGCACAGAATTAACACCTAATGATCATATTCACAAATTGTCATTACCATCACAAATGATCACGTCACCAACTATTCAAGAAATGAAACTGAGTAGAGATCTACCTCCTAAACGACCCCCACCACCTGATGCTAACTCCAAGTCGAATAATTCTACATCAGAATTAGATACTGATAATGTAACTGTTATGTAGAATAATCGATTTGTGTTCAACTATGAGTGTGTCTGTTTTTTTTTCCTACTCAACAGAAATTATTATCAGTACTCTTCCACTTTTTTCGAAGTTTTTTTTCAAACGATTAAAAACTGCTGAATTTATGAAAACCCCTATTGATTGATTATGTTTGTAATACTTCTGACTACTACTTTTTTCATTTATAAGTAGTAATAGTAGTTTATTTATGAATTAAATGTGTAATTCTCCTCTCCTATCATTTGATATTGGGAACTTTTTCTAAATTCTCT ] [+] EMBL CD192566 [ CAGAAATGATGGTGATAGTAACAGCATTTGTA GCAGTAATAATTCAGAAGTATCAGTTCATCATTCTCATCATGAAAGTCTTCCACAACTTATCAATAGCTCAACCACTAGCTGCACAGAATTAACACCTAATGATCATATTCACAAATTGTCATTACCATCACAAATGATCACGTCACCAACTATTCAAGAAATGAAACTGAGTAGAGATCTACCTCCTAAACGACCCCCACCACCTGATGCTAACTCCAAGTCGAATAATTCTACATCAGAATTAGATACTGATAATGTAACTGTTATGTAGAATAATCGATTTGTGTTCAACTATGAGTGTGTCTGTTTTTTTTTCCTACTCAACAGAAATTATTATCAGTACTCTTCCACTTTTTTCGAAGTTTTTTTTCAAACGATTAAAAACTGCTGAATTTATGAAAACCCCTATTGATTGATTATGTTTGTAATACTTCTGACTACTACTTTTTTCATTTATAAGTAGTAATAGTAGTTTATT ] [+] EMBL CD197801 [ TAACAGCATTTGTACGCAGTAATAATTCAGAAGTATCAGTTCGTCATTCTCATCATGAAAGTCTTCCACAACTTATCAATAGCTCAACCACTAGCTGCACAGAATTAACACCTAATGATCATATTCACAAATTGTCATTACCATCACAAATGATCACGTCACCAACTATTCAAGAAATGAAACTGAGTAGAGATCTACCTCCTAGACGACCCCCCCCACCTGATGCTAACTCCAAGTCGAATAATTCTACATCAGAATTAGATACTGATAATGTAACTGTTATGTAGAATAATCGATTTGTGCTCAACTATGAGTGTGTCTGTTTGTTTTTCCTACTCAACAGAAATTATTATCGGTACTCTTCCACTTTTT ] [+] EMBL CD140956 [ atatggGATCATATTCACAAATTGTCATTACCATCACAAATGATCACGTCACCAACTATTCAAGAAATGAAACTGAGTAGAGATCTACCTCCTAAACGACCCCCACCACCTGATGCTAACTCCAAGTCGAATAATTCTACATCAGAATTAGATACTGATAATGTAACTGTTATGTAGAATAATCGATTTGTGTTCAACTATGAGTGTGTCTGTTTTTTTTTCCTACTCAACAGAAATTATTATCAGTACTCTTCCACTTTTTTCGAAGTTTTTTTTCAAACAATTAAAAACCGCTGAATTTATGAAAACCCCTATTGATTGATTATGTTTGTAATACTTCTGACTACTACTTTTTTCATTTATAAGTAGTAATAGTAGTTTATTTATGAATTAAATGTGTAATTCTCCTCTCCTATCATTTGATATTGGTAACTTTTTCTAAATTCT ] [+] EMBL CD166603 [ cgacatcagAATG AACTGAGTAGAGATCTACCT CTAAACGACCCCCACCACCTGATGCT ACTCCAAGTCGAATAATTCTACATCAGAATTAGATACTGATAATGTAACTGTTATGTAGAATAATCGATTTG ] [+] EMBL CD082928 [ CCTAAACGACCCCCACCACCTGATGCTAACTCCAAGTCGAATAATTCTACATCAGAATTAGATACTGATAATGTAACTGTTATGTAGAATAATCGATTTGTGTTCAACTATGAGTGTGTCTGTTTTTTTTTCCTACTCAACAGAAATTATTATCAGTACTCTTCCACTTTTTTCGAAGTTTTTTTTCAAACAATTAAAAACTGCTGAATTTATGAAAACCCCTATTGATTGATTATGTTTGTAATACTTCTGACTACTACTTTTTTCATTTATAAGTAGTAATAGTAGTTTATTTATGAATTAAATGTGTAATTCTCCTCTCCTATCATTTGATATTGGTAACTTTTTCTAAATTCTCTATCATACATTTCCTGATACAAATCATTCATGTGTTTTGTTTTGTTTGTCAAAAGAAACTATAATATTTCTATTTATTACAATTTTGTAAACAATAAACAATATTTTGTTATGCATGATCATACATACATATGTATCCATTTACCAACTTCATCTATATTCGGCTTCATGTGTATCTCTAATGTACAACGACGTAAGTGAACAATGAATGTATGTTTAAATGANTTCACTAGATCGTTCTCAAT] consensusID : consensus_9615#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence [AACCGAATTCAACAGCGGTTAATCTACAGTTAATTCGTAGTTGCCTTGAAAAAATGCCTAAGGAGTTTCGTTTAAATTTAGGCTATTTAATGTGTTTCTTGCAGAAATTGTCTAGTCAATCAGATGTGAATAAAATGACTTCTGATAATTTATCAATAGTAATTGCACCAAACGTGTATAGACTTTCATCCTGTTCCATGAGTACTGGTAATAATATTGTCAATGGTAGTTCAGTACGACCAACTGAAGATTTAGGAAAATCTTTAGATTTCTTACAAAGCAATGGTCCAGGAATTCATTTAGTAGATATTCTTATTCAAAATGCAGAACAGTTATTTGGTCAAGAACAAGCCTCGTTTCGTCTAACTCATGTTCCAACCTATTTCGGAATAAAAGTTCCTTCACATCGTCCATCTGTCACTGGTTCTGTAACTTCATTGAAGTCGTCGAATTCCGGCACTGGTGTTTCCCATGGACTAGATAGCAGTACCATACCATTAAATGAACAATCATCTCAGAATGTTAACCAATTAATTGTTCCCAAAAAACCTGTTGGTGTTGACCATGATTCCGGTGTTCCTACTTGTCATTCAA] [+] EMBL CD153401 [AACCGAATTCAACAGCGGTTAATCTACAGTTAATTCGTAGTTGCCTTGAAAAAATGCCTAAGGAGTTTCGTTTAAATTTAGGCTATTTAATGTGTTTCTTGCAGAAATTGTCTAGTCAATCAGATGTGAATAAAATGACTTCTGATAATTTATCAATAGTAATTGCACCAAACGTGTATAGACTTTCATCCTGTTCCATGAGTACTGGTAATAATATTGTCAATGGTAGTTCAGTACGACCAACTGAAGATTTAGGAAAATCTTTAGATTTCTTACAAAGCAATGGTCCAGGAATTCATTTAGTAGATATTCTTATTCAAAATGCAGAACAGTTATTTGGTCAAGAACAAGCCTCGTTTCGTCTAACTCATGTTCCAACCTATTTCGGAATAAAAGTTCCTTCACATCGTCCATCTGTCACTGGTTCTGTAACTTCATTGAAGTCGTCGAATTCCGGCACTGGTGTTTCCCATGGACTAGATAGCAGTACCATACCATTAAATGAACAATCATCTCAGAATGTTAACCAATTAATTGTTCCCAAAAAACCTGTTGGTGTTGACCATGATTCCGGTGTTCCTACTTGTCATTCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9615#0 TCGGGCCAANATTCGGCACGAGGGTTCCAACCTATTTCGGAATAAAAGTTCCTTCACATC 60 consensus_9615#1 ------------------------------------------------------------ consensus_9615#0 GTCCATCTGTCACTGGTTCTGTAACTTCATTGAAGTCGTCGAATTCCGGCACTGGTGTTT 120 consensus_9615#1 ------------------------------------------------------------ consensus_9615#0 CCCATGGACTAGATAGCAGTACCATACCATTAAATGAACAATCATCTCAGAATGTTAACC 180 consensus_9615#1 ------------------------------------------------------------ consensus_9615#0 AATTAATTGTTCCCAAAAAACCTGTTGGTGTTGACCATGATTCCGGTGTTCCTACTTGTC 240 consensus_9615#1 ------------------------------------------------------------ consensus_9615#0 ATTCAACTCAGTCTGCTATAACTTCCAGGATGTCAAATTTAAGTACTACTCCTATACTTC 300 consensus_9615#1 ------------------------------------------------------------ consensus_9615#0 AACGAAAGAAAAATGCTGCTCCAAAACCACCAGTTCTTTTAAACCCAACCAATCATTCAA 360 consensus_9615#1 ------------------------------------------------------------ consensus_9615#0 TAACTCATGTGAGTAATAATGATCCTGAAAGATCGGAAAATCCCTCTGGCATTGACACGG 420 consensus_9615#1 ------------------------------------------------------------ consensus_9615#0 AAAACAGAAATGATGGTGATAGTAACAGCATTTGTAGCAGTAATAATTCAGAAGTATCAG 480 consensus_9615#1 ------------------------------------------------------------ consensus_9615#0 TTCATCATTCTCATCATGAAAGTCTTCCACAACTTATCAATAGCTCAACCACTAGCTGCA 540 consensus_9615#1 ------------------------------------------------------------ consensus_9615#0 CAGAATTAACACCTAATGATCATATTCACAAATTGTCATTACCATCACAAATGATCACGT 600 consensus_9615#1 -----------------AACCGAATTCAACAGCGGTTAAT----CTACAGTTAATT-CGT 38 * * ***** * ** * * *** * ** *** consensus_9615#0 CACCAACTATTCAAGAAATGAAACTGAGTAGAGATCTACCTCCTAAACGACCCCCACCAC 660 consensus_9615#1 AGTTGCCT--TGAAAAAATGC--CTAAGGAG-----TTTCGTTTAA---ATTTAGGCTAT 86 ** * ** ***** ** ** ** * * *** * * * consensus_9615#0 CTGATGCTAACTCCAAGTCGAATAATTCTACATCAGAATTAGATACTGATAATGTAACTG 720 consensus_9615#1 TTAATGT--GTTTCTTGCAGAAATTGTCTA-GTCA--ATCAGATGTGAATAAAATGACT- 140 * *** * * * *** **** *** ** **** **** * *** consensus_9615#0 TTATGTAGAATAATCGATTTGTGTTCAACTATGAGTGTGTCTGTTTTTTTTTCCTACTCA 780 consensus_9615#1 -TCTGATAATTTATCAATAGTAATTGCACCA--AACGTGTATAGACTTTCATCCTGTTCC 197 * ** * * *** ** ** ** * * **** * *** **** ** consensus_9615#0 ACAGAAATTATTATCAGTACTCTTCCACTTTTTTCGAAGTTTTTTTTCAAACGATTAAAA 840 consensus_9615#1 ATGAGTACTGGTAATAATATTGT--CAAT------GGTAGTTCAGTACGACCAACTGAAG 249 * * * ** * ** * * ** * * ** * * * * * * ** consensus_9615#0 ACTGCTGAATTTATGAAAACCCCTATTGATTGATTATGTTTGTAATACTTCTGACTACTA 900 consensus_9615#1 ATTTAGGAAAATCTTTAGATTTCTTACAAAGCAATGGTCCAGGAATTCATTTAGTAGATA 309 * * *** * * * * ** * * * * *** * * * ** consensus_9615#0 CTTTTTTCATTTATAAGTAGTAATAGTAGTTTATTTATGAATTAAATGTGTAATTCTCCT 960 consensus_9615#1 TTCTT---ATTCAAAATGCAGAACAGTTATTTGGTCAAGAAC---------AAGCCTCGT 357 * ** *** * ** ** *** *** * * *** ** *** * consensus_9615#0 CTCCTATCATTTGATATTGGTAACTTTTTCTAAATTCTCTATCATACATTTCCTGATACA 1020 consensus_9615#1 TTCGTCTAACTC-ATGTTCCAACCTATTTCGGAATAAAAGTTCCTTCACATCGTC-CATC 415 ** * * * * ** ** * ** **** *** ** * ** ** * * consensus_9615#0 AATCATTCATGTGTTTTGTTTTGTTTGTCAAAAGAAACTATAATATTTCTATTTATTACA 1080 consensus_9615#1 TGTCACTGGT-TCTGTAACTTCATTGAAGTCGTCGAATTCCGGCACTGGTGTTTCCCATG 474 *** * * * * * ** ** ** * * * * *** * consensus_9615#0 ATTTTGTAAACAATAAACAATATTTTGTTATGCATGATCATACATACATATGTATCCATT 1140 consensus_9615#1 GACTAGATAGCAGT--ACCATACCATTAAATGAACAATCATCTCAGAATGTTAACCAATT 532 * * * ** * ** *** * *** * ***** ** * * * *** consensus_9615#0 TACCAACTTCATCTATATT--CGGCTTCATGTGTATCTCTAATGTACAACGACGTAAGTG 1198 consensus_9615#1 AATTGTTCCCAAAAAACCTGTTGGTGTTGACCATGATTCCGGTGTTCCTACTTGTCATTC 592 * ** * * ** * * ** *** * ** * * consensus_9615#0 AACAATGAATGTATGTTTAAATGANTTCACTAGATCGTTCTCAAT 1243 consensus_9615#1 AA------------------------------------------- 594 ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||