These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9617#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1308 fasta sequence [TATATACAATTATTTTCGTCTGTAATATAGACATTATTTGAAAGATATAAAATAAATGCACAGCAAAAATATACATGGTAGACTATTCAACACATTTTTTGTTATGGTAAACGGATTGGGTTGATTTGTTTTATCTTCAATTCATTTCCAGAGAACTTTACACCTTGTAAGGCTTTTACAAGACGGACTGCGGCCTCTGAAGTTTCCATAATGAGATAGGCGTAAATAGATGGGGGTTTACTCTTTTTACTGCCCACTATTTTTATTGTTTGAACTTTTCCGTACGGTGCACACATTTCCTTAATATCTACTGCTCGAACGCCTTGAGGGAGATTGCTTATCCATAAAAACTTTGACGAGGATAGATCGCTTTTTGATCCATCGCTTGTTAAATTTTTCGTATCAGATGGGGAACTAGAGCGATTGGAATGTTCAGGATGGAGTACAGTAGAAATACCATGAAGACTCTCACTGGACGATATACATAGGCGCTTAGAATCATGATGGTTATGAAATTCTAGCTTAGATTGAAGAACTGGATCACTGGCACAAGAGGATGCAATGTTAGGGGGAGGTGGTAATCCAGTGGGAGGGAAG-AAACTGGCTGTTGTTCACTAGATAGCGTAGGTGTGTAATTATGAACTTGTAAATAATAATTCAGATAGTGGTTAAAATAGCGATGCCACTGAGATGTATATTCCTGTGTATTAGGGGCTAGGTTACACCCGGTATTAGTAGACATAAACTTCAAAGTCTCTTGATAAGCCGAAGAATATGCCATCGAATAAGCAGTCTGTATACTAGCTGACTGTGCGTGGTTAGGAATAATTGCCGCTAGGTGAGGATTTTGACCAATGCATTGATTAGGTACATCTCTGAGAACGTCATGAGGAAGTTGAGACGCCGGGATGAATTTGGACGGGGACACAGATGCTGGACGTTCAACGGCGGTAACAGGCATCAGTGTCGGTGGAAATGATCGGAGAGACATAGGAGGAGGAGAACCAATAGGAGTGCCGAAAGGTGGGGGTTGTATGCTAACATTAGGTGTCGACCCAATAGTAGCTACAGCACGTTGATAGAGTTGACAGGCTTTCTGATACATCATATGCATCTTTTCAATTTCTTGTTGAGAACCTAATGCAGATGAAGGAGGAACGGCTACCTGCCAAGAGCCGGACAAACCAAAACGATTATCACCGTTTACGTTTTCTGAAACCGCTTTAACAGAAGCAACCATTTGCACAGAATTTTGTGCTAGTTTTTGTGTTCCACCAGGAAACANACCAGGAAGCACACTCTGATGTA] [+] EMBL CD074714 [TATATACAATTATTTTCGTCTGTAATATAGACATTATTTGAAAGATATAAAATAAATGCACAGCAAAAATATACATGGTAGACTATTCAACACATTTTTTGTTATGGTAAACGGATTGGGTTGATTTGTTTTATCTTCAATTCATTTCCAGAGAACTTTACACCTTGTAAGGCTTTTACAAGACGGACTGCGGCCTCTGAAGTTTCCATAATGAGATAGGCGTAAATAGATGGGGGTTTACTCTTTTTACTGCCCACTATTTTTATTGTTTGAACTTTTCCGTACGGTGCACACATTTCCTTAATATCTACTGCTCGAACGCCTTGAGGGAGATTGCTTATCCATAAAAACTTTGACGAGGATAGATCGCTTTTTGATCCATCGCTTGTTAAATTTTTCGTATCAGATGGGGAACTAGAGCGATTGGAATGTTCAGGATGGAGTACAGTAGAAATACCATGAAGACTCTCACTGGACGATATACATAGGCGCTTAGAATCATGATGGTTATGAAATTCTAGCTTAGATTGAAGAACTGGATCACTGGCACAAGAGGATGCAATGTTAGGGGGAGGTGGTAATCCAGTGGGAGGGAAG AAACTGGCTGT ] [+] EMBL CD195048 [ ATGCCATGAAGACTCTCACTGGACGATATACATAGGCGCTTAAAATCATGATGGTTATGAAATTCTAGCTTAGATTGAAGAACTGGATCACTGGCACAAGAGGATGCAATGTTAGGGGGAGGTGGTAATCCAGTGGGAGGGAAGAAAACTGGCTGGTGTTCACTAGATAGCGTAGGTGTGTAATTATGAACTTGTAAATAATAATTCAGATAGTGGTTAAAATAGCGATGCCACTGAGATGTATATTCCTGTGTATTAGGGGCTAGGTTACACCCGGTATTAGTAGACATAAACTTCAAAGTCTCTTGATAAGCCGAAGAATATGCCATCGAATAAGCAGTCTGTATACTAGCTGACTGTGCGTGGTTAGGAATAATTGCCGCTAGGTGAGGATTTTGACCAATGCATTGATTAGGTACATCTCTGAGAACGTCATGAGGAAGTTGAGACGCCGGGATGA ] [+] EMBL CD169230 [ TGAACTTGTAAATAATAATTCAGATAGTGGTTAAAATAGCGATGCCACTGAGATGTATATTCCTGTGTATTAGGGGCTAGGTTACACCCGGTATTAGTAGACATAAACTTCAAAGTCTCTTGATAAGCCGAAGAATATGCCATCGAATAAGCAGTCTGTATACTAGCTGACTGTGCGTGGTTAGGAATAATTGCCGCTAGGTGAGGATTTTGACCAATGCATTGATTAGGTACATCTCTGAGAACGTCATGAGGAAGTTGAGACGCCGGGATGAATTTGGACGGGGACACAGATGCTGGACGTTCAACGGCGGTAACAGGCATCAGTGTCGGTGGAAATGATCGGAGAGACATAGGAGGAGGAGAACCAATAGGAGTGCCGAAAGGTGGGGGTTGTATGCTAACATTAGGTGTCGACCCAATAGTAGCTACAGCACGTTGATAGAGTTGACAGGCTTTCTGATACATCATATGCATCTTTTCAATTTCTTGTTGAGAACCTAATGCAGATGAAGGAGGAACGGCTACCTGCCAAGAGCCGGACAAACCAAAACGATTATCACCGTTTACGTT ] [+] EMBL CD117223 [ TGAACTTGTAAATAATAATTCAGATAGTGGTTAAAATAGCGATGCCACTGAGATGTATATTCCTGTGTATTAGGGGCTAGGTTACACCCGGTATTAGTAGACATAAACTTCAAAGTCTCTTGATAAGCCGAAGAATATGCCATCGAATAAGCAGTCTGTATACTAGCTGACTGTGCGTGGTTAGGAATAATTGCCGCTAGGTGAGGATTTTGACCAATGCATTGATTAGGTACATCTCTGAGAACGTCATGAGGAAGTTGAGACGCCGGGATGAATTTGGACGGGGACACAGATGCTGGACGTTCAACGGCGGTAACAGGCATCAGTGTCGGTGGAAATGATCGGAGAGACATAGGAGGAGGAGAACCAATAGGAGTGCCGAAAGGTGGGGGTTGTATGCTAACATTAGGT ] [+] EMBL CD146033 [ GTACATCTCTGAGAACGTCATGAGGAAGTTGAGACGCCGGGATGAATTTGGACGGGGACACAGATGCTGGACGTTCAACGGCGGTAACAGGCATCAGTGTCGGTGGAAATGATCGGAGAGACATAGGAGGAGGAGAACCAATAGGAGTGCCGAAAGGTGGGGGTTGTATGCTAACATTAGGTGTCGACCCAATAGTAGCTACAGCACGTTGATAGAGTTGACAGGCTTTCTGATACATCATATGCATCTTTTCAATTTCTTGTTGAGAACCTAATGCAGATGAAGGAGGAACGGCTACCTGCCAAGAGCCGGACAAACCAAAACGATTATCACCGTTTACGTTTTCTGAAACCGCTTTAACAGAAGCAACCATTTGCACAGAATTTTGTGCTAGTTTTTGTGTTCCACCAGGAAACANACCAGGAAGCACACTCTGATGTA] [+] EMBL CD117743 [ AGAACGTCATGAGGAAGTTGAGACGCCGGGATGAATTTGGACGGGGACACAGATGCTGGACGTTCAACGGCGGTAACAGGCATCAGTGTCGGTGGAAATGGTCGGAGAGACATAGGAGGAGGAGAACCAATAGGAGTGCCGAAAGGTGGGGGTTGTATGCTAACATTAGGTGTCGACCCAATAGTAGCTACAGCACGTTGATAGAGTTGACAGGCTTTCTGATACATCATATGCATCTTTTCAATTT ] [-] EMBL CD117037 [ GAACGTCATGAGGAAGTTGAGACGCCGGGATGAATTTGGACGGGGACACAGATGCTGGACGTTCAACGGCGGTAACAGGCATCAGTGTCGGTGGAAATGATCGGAGAGACATAGGAGGAGGAGAACCAATAGGAGTGCCGAAAGGTGGGGGTTGTATGCTAACATTAGGTGTCGACCCAATAGTAGCTACAGCACGTTGATAGAGTTGACAGGCTTTCTGATACATCATATGCATCTTTTCAATTTC ] [-] EMBL CD117075 [ GAACGTCATGAGGAAGTTGAGACGCCGGGATGAATTTGGACGGGGACACAGATGCTGGACGTTCAACGGCGGTAACAGGCATCAGTGTCGGTGGAAATGATCGGAGAGACATAGGAGGAGGAGAACCAATAGGAGTGCCGAAAGGTGGGGGTTGTATGCTAACATTAGGTGTCGACCCAATAGTAGCTACAGCACGTTGATAGAGTTGACAGGCTTTCTGATACATCATATGCATCTTTTCAATTTC ] [-] EMBL CD117040 [ GAACGTCATGAGGAAGTTGAGACGCCGGGATGAATTTGGACGGGGACACAGATGCTGGACGTTCAACGGCGGTAACAGGCATCAGTGTCGGTGGAAATGATCGGAGAGACATAGGAGGAGGAGAACCAATAGGAGTGCCGAAAGGTGGGGGTTGTATGCTAACATTAGGTGTCGACCCAATAGTAGCTACAGCACGTTGATAGAGTTGACAGGCTTTCTGATACATCATATGCATCTTTTCAATTTC ] consensusID : consensus_9617#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence [TTTTCGTCTGTAATATAGACATTATTTGAAAGATATAAAATAAATGCACAGCAAAAATATACATGGTAGACTATTCAACACATTTTTTGTTATGGTAAACGGATTGGGTTGATTTGTTTTATCTTCAATTCATTTCCAGAGAACTTTACACCTTGTAAGGCTTCCATAATGAGATAGGCGTAAATAGATGGGGGTTTACTCTTTTTACTGCCCACTATTTTTATTGTTTGAACTTTTCCGTACGGTGCACACATTTCCTTAATATCTACTGCTCGAACGCCTTGAGGGAGATTGCTTATCCATAAAANNNNNNNNNNNNNNNNNNNNNNNNNTGATCCATCGCTTGTTAAATTTTTCGTATCAGATGGGGAACTAGAGCGATTGGAATGTTCAGGATGGAGTACAGTAGAAATACCATGAAGACTCTCACTGGACGATATACATAGGCGCTTAGAATCATGATGGTTATGGATCACTGGCACAAGAGGATGCAATGTTAGGGGGAGGTGGTAATCCAGTGGGAGGGAAGAAAACTGGCTGTTGTTCACTAGATAGCGTAGGTGTGTAATTATGAACTTGTAAATAATAATTCAGATAGT] [-] EMBL CD080880 [TTTTCGTCTGTAATATAGACATTATTTGAAAGATATAAAATAAATGCACAGCAAAAATATACATGGTAGACTATTCAACACATTTTTTGTTATGGTAAACGGATTGGGTTGATTTGTTTTATCTTCAATTCATTTCCAGAGAACTTTACACCTTGTAAGGCTTCCATAATGAGATAGGCGTAAATAGATGGGGGTTTACTCTTTTTACTGCCCACTATTTTTATTGTTTGAACTTTTCCGTACGGTGCACACATTTCCTTAATATCTACTGCTCGAACGCCTTGAGGGAGATTGCTTATCCATAAAANNNNNNNNNNNNNNNNNNNNNNNNNTGATCCATCGCTTGTTAAATTTTTCGTATCAGATGGGGAACTAGAGCGATTGGAATGTTCAGGATGGAGTACAGTAGAAATACCATGAAGACTCTCACTGGACGATATACATAGGCGCTTAGAATCATGATGGTTATGGATCACTGGCACAAGAGGATGCAATGTTAGGGGGAGGTGGTAATCCAGTGGGAGGGAAGAAAACTGGCTGTTGTTCACTAGATAGCGTAGGTGTGTAATTATGAACTTGTAAATAATAATTCAGATAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9617#0 TATATACAATTATTTTCGTCTGTAATATAGACATTATTTGAAAGATATAAAATAAATGCA 60 consensus_9617#1 ------------TTTTCGTCTGTAATATAGACATTATTTGAAAGATATAAAATAAATGCA 48 ************************************************ consensus_9617#0 CAGCAAAAATATACATGGTAGACTATTCAACACATTTTTTGTTATGGTAAACGGATTGGG 120 consensus_9617#1 CAGCAAAAATATACATGGTAGACTATTCAACACATTTTTTGTTATGGTAAACGGATTGGG 108 ************************************************************ consensus_9617#0 TTGATTTGTTTTATCTTCAATTCATTTCCAGAGAACTTTACACCTTGTAAGGCTTTTACA 180 consensus_9617#1 TTGATTTGTTTTATCTTCAATTCATTTCCAGAGAACTTTACACCTTGTAAGGCT------ 162 ****************************************************** consensus_9617#0 AGACGGACTGCGGCCTCTGAAGTTTCCATAATGAGATAGGCGTAAATAGATGGGGGTTTA 240 consensus_9617#1 ------------------------TCCATAATGAGATAGGCGTAAATAGATGGGGGTTTA 198 ************************************ consensus_9617#0 CTCTTTTTACTGCCCACTATTTTTATTGTTTGAACTTTTCCGTACGGTGCACACATTTCC 300 consensus_9617#1 CTCTTTTTACTGCCCACTATTTTTATTGTTTGAACTTTTCCGTACGGTGCACACATTTCC 258 ************************************************************ consensus_9617#0 TTAATATCTACTGCTCGAACGCCTTGAGGGAGATTGCTTATCCATAAAAACTTTGACGAG 360 consensus_9617#1 TTAATATCTACTGCTCGAACGCCTTGAGGGAGATTGCTTATCCATAAAANNNNNNNNNNN 318 ************************************************* consensus_9617#0 GATAGATCGCTTTTTGATCCATCGCTTGTTAAATTTTTCGTATCAGATGGGGAACTAGAG 420 consensus_9617#1 NNNNNNNNNNNNNNTGATCCATCGCTTGTTAAATTTTTCGTATCAGATGGGGAACTAGAG 378 ********************************************** consensus_9617#0 CGATTGGAATGTTCAGGATGGAGTACAGTAGAAATACCATGAAGACTCTCACTGGACGAT 480 consensus_9617#1 CGATTGGAATGTTCAGGATGGAGTACAGTAGAAATACCATGAAGACTCTCACTGGACGAT 438 ************************************************************ consensus_9617#0 ATACATAGGCGCTTAGAATCATGATGGTTATGAAATTCTAGCTTAGATTGAAGAACTGGA 540 consensus_9617#1 ATACATAGGCGCTTAGAATCATGATGGTTATG--------------------------GA 472 ******************************** ** consensus_9617#0 TCACTGGCACAAGAGGATGCAATGTTAGGGGGAGGTGGTAATCCAGTGGGAGGGAAGAAA 600 consensus_9617#1 TCACTGGCACAAGAGGATGCAATGTTAGGGGGAGGTGGTAATCCAGTGGGAGGGAAGAAA 532 ************************************************************ consensus_9617#0 -CTGGCTGTTGTTCACTAGATAGCGTAGGTGTGTAATTATGAACTTGTAAATAATAATTC 659 consensus_9617#1 ACTGGCTGTTGTTCACTAGATAGCGTAGGTGTGTAATTATGAACTTGTAAATAATAATTC 592 *********************************************************** consensus_9617#0 AGATAGTGGTTAAAATAGCGATGCCACTGAGATGTATATTCCTGTGTATTAGGGGCTAGG 719 consensus_9617#1 AGATAGT----------------------------------------------------- 599 ******* consensus_9617#0 TTACACCCGGTATTAGTAGACATAAACTTCAAAGTCTCTTGATAAGCCGAAGAATATGCC 779 consensus_9617#1 ------------------------------------------------------------ consensus_9617#0 ATCGAATAAGCAGTCTGTATACTAGCTGACTGTGCGTGGTTAGGAATAATTGCCGCTAGG 839 consensus_9617#1 ------------------------------------------------------------ consensus_9617#0 TGAGGATTTTGACCAATGCATTGATTAGGTACATCTCTGAGAACGTCATGAGGAAGTTGA 899 consensus_9617#1 ------------------------------------------------------------ consensus_9617#0 GACGCCGGGATGAATTTGGACGGGGACACAGATGCTGGACGTTCAACGGCGGTAACAGGC 959 consensus_9617#1 ------------------------------------------------------------ consensus_9617#0 ATCAGTGTCGGTGGAAATGATCGGAGAGACATAGGAGGAGGAGAACCAATAGGAGTGCCG 1019 consensus_9617#1 ------------------------------------------------------------ consensus_9617#0 AAAGGTGGGGGTTGTATGCTAACATTAGGTGTCGACCCAATAGTAGCTACAGCACGTTGA 1079 consensus_9617#1 ------------------------------------------------------------ consensus_9617#0 TAGAGTTGACAGGCTTTCTGATACATCATATGCATCTTTTCAATTTCTTGTTGAGAACCT 1139 consensus_9617#1 ------------------------------------------------------------ consensus_9617#0 AATGCAGATGAAGGAGGAACGGCTACCTGCCAAGAGCCGGACAAACCAAAACGATTATCA 1199 consensus_9617#1 ------------------------------------------------------------ consensus_9617#0 CCGTTTACGTTTTCTGAAACCGCTTTAACAGAAGCAACCATTTGCACAGAATTTTGTGCT 1259 consensus_9617#1 ------------------------------------------------------------ consensus_9617#0 AGTTTTTGTGTTCCACCAGGAAACANACCAGGAAGCACACTCTGATGTA 1308 consensus_9617#1 ------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||