These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9620#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 864 fasta sequence [GCGATTGAATACGCCAATGTAAATATTCGCACGTAACAATTGGTCAACTTAGATCATATACTCCTCAACGTATCGACTATCTTTCGATTTCCATTGATTCTGAGGACTCACTTAAAGTTCTAATCGCTAAAAATACTCAAATAAACGAATTCTTTTAAATATCGAGCGCTATTTAGAATTTGCTGAATCGCAAACAGCTCAAGAGTAAAGTTTCATCGATAACCACTTGGCTTTTATATTTGCAAATCAATCTGGGACCAATGAAACATTGTCAACTGATTTTGCATGATGTCCCCGAAAACACAGAGTTAGGGATTGATCTGAAGTTTTGGAAGGTTGGCAAGCACTTTAAAGGCATCAAAGATATACCTCTGGGAATACACTTTGTCTACTATAGTGCTGTAAATTCAGATTGTATGTCAGGGCAACGTGTTGGATTCGTAGCTAATTTCTCTCAACCTGGTTTTATTGTTAAGAAGTGGCAAAAAGAAGAAGAGGATTTCATAGATATTAATTTAACTGATGACGAAATAGAACGTATTATTTCGAATTTCGATGAAATTTCTATGTGTCTGGGGCAGTATCCTGCAGAGTTACACAGAGATTGGATTTCGCTGTCTAATTTTATAACAACATGTACATTAACTCGTCTTGTTCCCTATTGTGGTCGTCTATATTCCTGTCCACACTTCTTATCTAAACCCTCGAATACCCAAGAACGCCTGGCTCTTAAAAGTTCCCATACGACTGACTGTTCAAATAAAAATTCAGAAGACCTCTTACCAAATTTATCTATTATTCCTGGTACAGAGGTACGTTTTACTTCAATTCCAACAAAACCACTTTATCCACCACTTTCATCTC] [-] EMBL CD160944 [GCGATTGAATACGCCAATGTAAATATTCGCACGTAACAATTGGTCAACTTAGATCATATACTCCTCAACGTATCGACTATCTTTCGATTTCCATTGATTCTGAGGACTCACTTAAAGTTCTAATCGCTAAAAATACTCAAATAAACGAATTCTTTTAAATATCGAGCGCTATTTAGAATTTGCTGAATCGCAAACAGCTCAAGAGTAAAGTTTCATCGATAACCACTTGGCTTTTATATTTGCAAATCAATCTGGGACCAATGAAACATTGTCAACTGATTTTGCATGATGTCCCCGAAAACACAGAGTTAGGGATTGATCTGAAGTTTTGGAAGGTTGGCAAGCACTTTAAAGGCATCAAAGATATACCTCTGGGAATACACTTTGTCTACTATAGTGCTGTAAATTCAGATTGTATGTCAGGGCAACGTGTTGGATTCGTAGCT ] [+] EMBL CD195717 [ GGACTCACTTAAAGTTCTAACCGCTAAAAATACTCAAATAAACGAATTCTTTTAAATATCGAGCGCTATTTAGAATTTGCTGAATCGCAAACAGCTCAAGAGTAAAGTTTCATCGATAACCACTTGGCTTTTATATTTGCAAATCAATCTGGGACCAATGAAACATTGTCAACTGATTTTGCATGATGTCCCCGAAAACACAGAGTTAGGGATTGATCTGAAGTTTTGGAGGGTTGGCAAGCACTTTAAAGGCATCAAAGATATAC ] [-] EMBL CD186155 [ GTCTACTATAGTGCTGTAAATTCAGATTGTATGTCAGGGCAACGTGTTGGATTCGTAGCTAATTTCTCTCAACCTGGTTTTATTGTTAAGAAGTGGCAAAAAGAAGAAGAGGATTTCATAGATATTAATTTAACTGATGACGAAATAGAACGTATTATTTCGAATTTCGATGAAATTTCTATGTGTCTGGGGCAGTATCCTGCAGAGTTACACAGAGATTGGATTTCGCTGTCTAATTTTATAACAACATGTACATTAACTC ] [-] EMBL CD195161 [ TTGGATTTCGCTGTCTAATTTTATAACAACATGTACATTAACTCGTCTTGTTCCCTATTGTGGTCGTCTATATTCCTGTCCACACTTCTTATCTAAACCCTCGAATACCCAAGAACGCCTGGCTCTTAAAAGTTCCCATACGACTGACTGTTCAAATAAAAATTCAGAAGACCTCTTACCAAATTTATCTATTATTCCTGGTACAGAGGTACGTTTTACTTCAATTCCAACAAAACCACT ] [-] EMBL BG932468 [ ACACTTCTTATCTAAACCCTCGAATACCCAAGAACGCCTGGCTCTTAAAAGTTCCCATACGACTGACTGTTCAAATAAAAATTCAGAAGACCTCTTACCAAATTTATCTATCATTCCTGGTACAGAGGTACGTTTTACTTCAATTCCAACAAAACCACTTTATCCACCACTTTCATCTC] consensusID : consensus_9620#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [GCATTTCATAGATATTAATTTAACTGATGACGAAATAGAACGTATTATTTCGAATTTCGATGAAATTTCTATGTGTCTGGGGCAGTATCCTGCAGAGTTACACAGAGATTGGATTTCGCTGTCTAATTTTATTCCCTATTGTGGTCGTCTATATTCCTTCCACACTTCTTATCTAAACCCTCGAATACCCAAGAACGCCTGGCTCTTAAAAGTTCCCATACGACTGACTGTTCAAATAAAAATTCAGAAGACCTCTTACCAAATTTATCNNNNNNNNNNNNNNNNNNNNNNNNNTTTACTTCAATTCCAACAAAACCACTTTATCCACCACTTTCATCTCCATCGGAAATCACTGCCCATTGTATGGATCAAACATATACCCTCTGTACTACTATAGACGTAATCTTCTCGAGCATCACATCTGAAAAGGCCAGTGGCCTGCTCGGTGAATTTCAGTTTGCTTTTCTCAATTTATTACTAAATCATTCAATAGAAGGCTGGGAACAGTGGCGTCGTATATTCCAATTACTTGCTAGTTGTGAGAAAGCGATTGTTGATTATCCTAATTTGTACATTGACTTCATTACAGTTATTTATCACCAGTTAAATAATGGTACTGGATATTTTCTTTTC] [+] EMBL CD080893 [GCATTTCATAGATATTAATTTAACTGATGACGAAATAGAACGTATTATTTCGAATTTCGATGAAATTTCTATGTGTCTGGGGCAGTATCCTGCAGAGTTACACAGAGATTGGATTTCGCTGTCTAATTTTATTCCCTATTGTGGTCGTCTATATTCCTTCCACACTTCTTATCTAAACCCTCGAATACCCAAGAACGCCTGGCTCTTAAAAGTTCCCATACGACTGACTGTTCAAATAAAAATTCAGAAGACCTCTTACCAAATTTATCNNNNNNNNNNNNNNNNNNNNNNNNNTTTACTTCAATTCCAACAAAACCACTTTATCCACCACTTTCATCTCCATCGGAAATCACTGCCCATTGTATGGATCAAACATATACCCTCTGTACTACTATAGACGTAATCTTCTCGAGCATCACATCTGAAAAGGCCAGTGGCCTGCTCGGTGAATTTCAGTTTGCTTTTCTCAATTTATTACTAAATCATTCAATAGAAGGCTGGGAACAGTGGCGTCGTATATTCCAATTACTTGCTAGTTGTGAGAAAGCGATTGTTGATTATCCTAATTTGTACATTGACTTCATTACAGTTATTTATCACCAGTTAAATAATGGTACTGGATATTTTCTTTTC] consensusID : consensus_9620#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 621 fasta sequence [AAAATAATTTTTATTTCAGACTTGTTTACAGCTGTACAATGACAGGTGCTTCATCCCCGTCCCAGTCAAATTCTTCAATAGGGATTTCAGTTATATTTGGAGTACACCTTTGTAATAACTGATATGAAGTGATCATATCCCATTTGAATCGATGTTTTATGTTATGAGCGAAGCCGTCTGCACGTTTAAAGAGATCATTCAGAATATTACTAGTTTCACTGGGACATGTTTTGTTAGTTATATCAGAAGTACAAACAGAATAAATATTTTTCAAAAGACGCCCAATCATAGTTGGTAGGAAGCCAGGTTCGGTTAACTTGCACTGGGTACTTGAGCTAGATGATTCCGAAAAGAAAATATCCAGTAACTCCACAGCTGAATCGCTACTTGACACCTCTGATCTATTTGCATTATTTAACTGGTGATAAATAACTGTAATGAAGTCAATGTACAAATTAGGATAATCAACAATCGCTTTCTCACAACTAGCAAGTAATTGGAATATACGACGCCACTGTTCCCAGCCTTCTATTGAATGATTTAGTAATAAATTGAGAAAAGCAAACTGAAATTCACCGAGCAGTTCCCGAGTAGATTCCAGTTCCTTATTTAGGCCACTGG] [+] EMBL CD074725 [AAAATAATTTTTATTTCAGACTTGTTTACAGCTGTACAATGACAGGTGCTTCATCCCCGTCCCAGTCAAATTCTTCAATAGGGATTTCAGTTATATTTGGAGTACACCTTTGTAATAACTGATATGAAGTGATCATATCCCATTTGAATCGATGTTTTATGTTATGAGCGAAGCCGTCTGCACGTTTAAAGAGATCATTCAGAATATTACTAGTTTCACTGGGACATGTTTTGTTAGTTATATCAGAAGTACAAACAGAATAAATATTTTTCAAAAGACGCCCAATCATAGTTGGTAGGAAGCCAGGTTCGGTTAACTTGCACTGGGTACTTGAGCTAGATGATTCCGAAAAGAAAATATCCAGTAACTCCACAGCTGAATCGCTACTTGACACCTCTGATCTATTTGCATTATTTAACTGGTGATAAATAACTGTAATGAAGTCAATGTACAAATTAGGATAATCAACAATCGCTTTCTCACAACTAGCAAGTAATTGGAATATACGACGCCACTGTTCCCAGCCTTCTATTGAATGATTTAGTAATAAATTGAGAAAAGCAAACTGAAATTCACCGAGCAGTTCCCGAGTAGATTCCAGTTCCTTATTTAGGCCACTGG] [+] EMBL CD147729 [ TTACTAGTTTCACTGGGACATGTTTTGTTAGTTATATCAGAAGTACAAACAGAATAAATATTTTTCAAAAGACGCCCAATCATAGTTGGTAGGAGGCCAGGTTCGGTTAACTTGCACTGGGTACTTGAGCTAGATGATTCCGAAAAGAGAATATCCAGTAACTCCACAGCTGAATCGCTACTTGACACCTCTGATCTATTTGCATTATTTAACTGGTGATAAATAACTGTAATGAAGTCAATGTACAAATTAGGATAATCAACAATCGCTTTCTCACAACTAGCAAGTAATTGGAATATACGACGCCACTGTTCCCAGCCTTCTATTGAATGATTTAGTAATAAATTGAGAAAAGCAAACTGAAATTCACCGAGCAGTTCCCGAGTAGATTCCAGTTCCTTA ] [+] EMBL CD147348 [ TTACTAGTTTCACTGGGACATGTTTTGTTAGTTATATCAGAAGTACAAACAGAATAAATATTTTTCAAAAGACGCCCAATCATAGTTGGTAGGAAGCCAGGTTCGGTTAACTTGCACTGGGTACTTGAGCTAGATGATTCCGAAGAGAAAATATCCAGTAACTCCACAGCTGAATCGCTACTTGACACCTCTGATCTATTTGCATTATTTAACTGGTGATAAATAACTGTAATGAAGTCAATGTACAAATTAGGATAATCAACAATCGCTTTCTCACAACTAGCAAGTAATTGGAATATACGACGCCACTGTTCCCAGCCTTCTATTGAATGATTTAGTAATAAATTGAGAAAAGCAAACTGAAATTCACCGAGCAGTTCCCGAGTAGATTCCAGTTCCTTA ] [+] EMBL CD134293 [ GGAATATACGACGCCACTGTTCCCAGCCTTCTATTGAATGATTTAGTAATAAATTGAGAAAAGCAAACTGAAATTCACCGAGCAGTTCCCGAGTAGATTCCAGat ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9620#0 GCGATTGAATACGCCAATGTAAATATTCGCACGTAACAATTGGTCAACTTAGATCATATA 60 consensus_9620#1 ------------------------------------------------------------ consensus_9620#2 ------------------------------------------------------------ consensus_9620#0 CTCCTCAACGTATCGACTATCTTTCGATTTCCATTGATTCTGAGGACTCACTTAAAGTTC 120 consensus_9620#1 ------------------------------------------------------------ consensus_9620#2 ------------------------------------------------------------ consensus_9620#0 TAATCGCTAAAAATACTCAAATAAACGAATTCTTTTAAATATCGAGCGCTATTTAGAATT 180 consensus_9620#1 ------------------------------------------------------------ consensus_9620#2 ------------------------------------------------------------ consensus_9620#0 TGCTGAATCGCAAACAGCTCAAGAGTAAAGTTTCATCGATAACCACTTGGCTTTTATATT 240 consensus_9620#1 ------------------------------------------------------------ consensus_9620#2 ------------------------------------------------------------ consensus_9620#0 TGCAAATCAATCTGGGACCAATGAAACATTGTCAACTGATTTTGCATGATGTCCCCGAAA 300 consensus_9620#1 ------------------------------------------------------------ consensus_9620#2 ------------------------------------------------------------ consensus_9620#0 ACACAGAGTTAGGGATTGATCTGAAGTTTTGGAAGGTTGGCAAGCACTTTAAAGGCATCA 360 consensus_9620#1 ------------------------------------------------------------ consensus_9620#2 ------------------------------------------------------------ consensus_9620#0 AAGATATACCTCTGGGAATACACTTTGTCTACTATAGTGCTGTAAATTCAGATTGTATGT 420 consensus_9620#1 ------------------------------------------------------------ consensus_9620#2 --------------------------------------------AAAATAATTTTTATTT 16 consensus_9620#0 CAGGGCAACGTGTTGGATTCGTAGCTAATTTCTCTCAACCTGGTTTTATTGTTAAGAAGT 480 consensus_9620#1 ------------------------------------------------------------ consensus_9620#2 CAGACTTGTTTACAGCTGTACAATGACAGGTGCTTCATCCCCGTCCCAGTCAAATTCTTC 76 consensus_9620#0 GGCAAAAAGAAGAAGAGGATTTCATAGATATTAATTTAACTGATGACGAAATAGAACGTA 540 consensus_9620#1 ----------------GCATTTCATAGATATTAATTTAACTGATGACGAAATAGAACGTA 44 consensus_9620#2 AATAGGGATTTCAGTTATATTTGGAGTACACCTTTGTAATAACTGAT---ATGAAGTG-A 132 **** * * * *** *** ** * * * consensus_9620#0 TTATTTCGAATTTCGATGAAATTTCTATGTGTCTGGGGCAGTATCCTGCAGAGTTACACA 600 consensus_9620#1 TTATTTCGAATTTCGATGAAATTTCTATGTGTCTGGGGCAGTATCCTGCAGAGTTACACA 104 consensus_9620#2 TCATATCCCATTTGAATCGATGTTTTATGTTATGAGCGAAGCCGTCTGCACGTTTAAAGA 192 * ** ** **** ** * ** ***** * * ** ***** *** * * consensus_9620#0 GAGATTGGATTTCGCTGTCTAATTTTATAACAACATGTACATTAACTCGTCTTGTTCCCT 660 consensus_9620#1 GAGATTGGATTTCGCTGTCTAATTTTAT---------------------------TCCCT 137 consensus_9620#2 GATCATTCAGAATATTA-CTAGTTTCACTGGGACATGTTTTGTTAGTTATATCA-GAAGT 250 ** * * * *** *** * * consensus_9620#0 ATTGTGGTCGTCTATATTCCTGTCCACACTTCTTATCTAAACCCTCGAATACCCAAGAAC 720 consensus_9620#1 ATTGTGGTCGTCTATATTCCT-TCCACACTTCTTATCTAAACCCTCGAATACCCAAGAAC 196 consensus_9620#2 ACAAACAGAATAAATATTTTTCAAAAGACGCCCAATCATAGTTGGTAGGAAGCCAGGTTC 310 * * ***** * * ** * *** * * *** * * consensus_9620#0 GCCTGGCTCTTAAAAGTTCCCATA--CGACTGACTGTTCAAATAAAA-ATTCAGAAGACC 777 consensus_9620#1 GCCTGGCTCTTAAAAGTTCCCATA--CGACTGACTGTTCAAATAAAA-ATTCAGAAGACC 253 consensus_9620#2 GGTTAACTTGCACTGGGTACTTGAGCTAGATGATTCCGAAAAGAAAATATCCAGTAACTC 370 * * ** * * * * * *** * *** **** ** *** * * consensus_9620#0 TCTTACCAAATT--TATCTATTATTCCTGGTACAGAGGTACGTTTTACTTCAATTCCAAC 835 consensus_9620#1 TCTTACCAAATT--TATCNNNNNNNNNNNNNNNNNNNNNNNNNTTTACTTCAATTCCAAC 311 consensus_9620#2 CACAGCTGAATCGCTACTTGACACCTCTGATCTATTTGCATTATTTAACTGGTGATAAAT 430 * *** ** **** * ** consensus_9620#0 AAAACCACTTTATCCACCACTTTCATCTC------------------------------- 864 consensus_9620#1 AAAACCACTTTATCCACCACTTTCATCTCCATCGGAAATCACTGCCCATT-GTATGGATC 370 consensus_9620#2 AACTGTAATGAAGTCAATGTACAAATTAGGATAATCAACAATCGCTTTCTCACAACTAGC 490 ** * * * ** ** consensus_9620#0 ------------------------------------------------------------ consensus_9620#1 AAACATATACCCTCTGTACTACTATAGACGTAATCTTCTCGAGCATCACATCTGAAAAGG 430 consensus_9620#2 AAGTAATTGGAATATACGACGCCACTGTTCCCAGCCTTCTATTGAATGATTTAGTAATAA 550 consensus_9620#0 ------------------------------------------------------------ consensus_9620#1 CCAGTGGCCTGCTCGGTGAATTTCAGTTTGCTTTTCTCAATTTATTACTAAATCATTCAA 490 consensus_9620#2 ATTGAGAAAAGCAAACTGAAATTCACCGAGCAGTTCCCGAGTAGATTCCAGTTCCTTATT 610 consensus_9620#0 ------------------------------------------------------------ consensus_9620#1 TAGAAGGCTGGGAACAGTGGCGTCGTATATTCCAATTACTTGCTAGTTGTGAGAAAGCGA 550 consensus_9620#2 TAGGCCACTGG------------------------------------------------- 621 consensus_9620#0 ------------------------------------------------------------ consensus_9620#1 TTGTTGATTATCCTAATTTGTACATTGACTTCATTACAGTTATTTATCACCAGTTAAATA 610 consensus_9620#2 ------------------------------------------------------------ consensus_9620#0 ----------------------- consensus_9620#1 ATGGTACTGGATATTTTCTTTTC 633 consensus_9620#2 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||