These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9621#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1076 fasta sequence [TTGTATAAATTCCCTAGAGTGAGGAAAATGATGAGCGGACGATTCTAATGAGATGATATGCTTTTCTGAGGCTTTCAAAGACTTGTCAGCACAAATATTTGAATATTCTTTACTAACATCAGATGTTGTAGTATCATGAGCAATATCCAATGAAGAGGTGACGTTTTCTTCCTGAGGATGCGCCTCAGTATGTGGTAAGTGCTGTACACGGACTGCTTGGCCAAGAGGTCGGCTAACAGACTTGATGTTAAGAGATGAACTGACAGTTCCGCCACCTGATCCAAGTGTTACGGTTGATTGTGGATTATTTTGTCTTGTTAAACATTCTAACTGACGTAACTGTTTAGCTAATTGTTCAATCATTTGTTCAAGTAAAGCACAACGTTCATTTTGATGATTGAATATACGCTGCCATCGTACAAACTGTCCACGAGTAAAATGCGTAAATTCAGAACAAGAATTACCCATTGCCATACTGGCAACCTTGAAAACTGTGGCACGTTCACGAGCCAAGTTAAAACGTTGCAATAGTTCAGTGGGATCACGAGCAGATTCTACATCACCGACAGAACGCCGAAGTTCTTCACCTTTTCGATTCATTGTCAACTGATAACGTTCGAGATCAGTCACATGGGCTTCCAGTTTCACAAGCGCATCGTTAATAAACCTAATTCCATTCTCATCAGTCGTAGACGATGTCTTGTAATCATCATCATCTTCATATCCATCAGCATACGCATCCGAATCATAACCTTGCTTCCGTAAAGCCACTGCTGCTGTTTTAGAATTAGAGAGTGCTGACAACCATGCTAATTGCTCACTCTCAGAGTTAGCCTTTATATGAAATTTTTGTGCACTGCTATTTGAGATTTCGAAATAAACCGTTCCTATTTTTTTGACAGTAGCATCCGCAAGTTTGATAGTTCCACGACAGGTATGAGCCATCTCTGCTGGATTCCTGTAATACGACAACAAGCCATATTGTAATACGAACCATCTTTTTTGATATCCCTTCAAATAATTTGTCCACTTATAAAGGTAACCTTTCATACAATCCCTCTCGAGACTTAGGTCCA] [+] EMBL CD111879 [TTGTATAAATTCCCTAGAGTGAGGAAAATGATGAGCGGACGATTCTAATGAGATGATATGCTTTTCTGAGGCTTTCAAAGACTTGTCAGCACAAATATTTGAATATTCTTTACTAACATCAGATGTTGTAGTATCATGAGCAATATCCAATGAAGAGGTGACGTTTTCTTCCTGAGGATGCGCCTCAGTATGTGGTAAGTGCTGTACACGGACTGCTTGGCCAAGAGGTCGGCTAACAGACTTGATGTTAAGAGATGAACTGACAGTTCCGCCACCTGATCCAAGTGTTACGGTTGATTGTGGATTATTTTGTCTTGTTAAACATTCTAACT ] [+] EMBL CD111857 [TTGTATAAATTCCCTAGAGTGAGGAAAATGATGAGCGGACGATTCTAATGAGATGATATGCTTTTCTGAGGCTTTCAAAGACTTGTCAGCACAAATATTTGAATATTCTTTACTAACATCAGATGTTGTAGTATCATGAGCAATATCCAATGAAGAGGTGACGTTTTCTTCCTGAGGATGCGCCTCAGTATGTGGTAAGTGCTGTACACGGACTGCTTGGCCAAGAGGTCGGCTAACAGACTTGATGTTAAGAGATGAACTGACAGTTCCGCCACCTGATCCAAGTGTTACGGTTGATTGTGGATTATTTTGTCTTGGTAAACATTCTA ] [-] EMBL CD195172 [ AATGAGATGATATGCTTTTTTGAGGCTTTCAAAGACTTGTCAGCACAAATATTTGAATATTCTTTACTAACATCAGATGTTGTAGTATCATGAGCAATATCCAATGAAGAGGTGACGTTTTCTTCCTGAGGATGCGCCTCAGTATGTGGTAAGTGCTGTACACGGACTGCTTGGCCAAGAGGTCGGCTAACAGACTTGATGTTAAGAGATGAACTGACAGTTCCGCCACCTGATCCAAGTGTTACGGTTGATTGTGGATTATTTTGTCTTGTTAAACATTCTAACTGACGTAACTGTTTAGCTAATTGTTCAATCATTTGTTCAAGTAAAGCACAACGTTCATTTTGATGATTGAATATACGCTGCCATCGTACAAACTGTCCACGAGTAAAATGCGTAAATTCAGAACAAGAATTACCCATTGCCATACTGGCAACCTTGAAAACTGTGGCACGTTCACGAGCCAAGTTAAAACGTTGCAATAGTTC ] [-] EMBL CD162957 [ AAATTCAGAACAAGAATTAACCATTGCCATACTGGCAACCTTGAAAACTGTGGCACGTTCACGAGCCAAGTTAAAACGTTGCAATAGTTCAGTGGGATCACGAGCAGATTCTACATCACCGACAGAACGCCGAAGTTCTTCACCTTTTCGATTCATTGTCAACTGATAACGTTCGAGATCAGTCACATGGGCTTCCAGTTTCACAAGCGCATCGTTAATAAACCTAATTCCATTCTCATCAGTCGTAGACGATGTCTTGTAATCATCATCATCTTCATATCCATCAGCATACGCATCCGAATCATAACCTTGCTTCCGTA ] [-] EMBL CD154003 [ GTTAAAACGTTGCAATAGTTCAGTGGGATAACGAGCAGATTCTACATCACCGACAGAACGCCGAAGTTCTTCACCTTTTCGATTCATTGTCAACTGATAACGTTCGAGATCAGTCACATGGGCTTCCAGTTTCACAAGCGCATCGTTAATAAACCTAATTCCATTCTCATCAGTCGTAGACGATGTCTTGTAATCATCATCATCTTCATATCCATCAGCATACGCATCCGAATCATAACCTTGCTTCCGTAAAGCCACTGCTGCTGTTTTAGAATTAGAGAGTGCTGACAACCATGCTAATTGCTCACTCTCAGAGTTAGCCTTCATATGAAATTTTTGTGCACTGCTATTTGAGATTTCGAAATAAACCGTTCCTATTTTTTTGACAGTAGCATCCGCAAGTTTGATAGTTCCACGACAGGTATGAGCCATCTCTGCTGGATTCCTG ] [-] EMBL CD112027 [ ATTCATTGTCAACTGATAACGTTCGAGATCAGTCACATGGGCTTCCAGTTNCACAAGCGCATCGTTAATAAACCTAATTCCATTCTCATCAGTCGTAGACGATGTCTTGTAATCATCATCATCTTCATATCCATCAGCATACGCATCCGAATCATAACCTTGCTTCCGTAAAGCCACTGCTGCTGTTTTAGAATTAGAGAGTGCTGACAACCATGCTAATTGCTCACTCTCAGAGTTAGCCTTTATATGAAATTTTTGTGCACTGCTATTTGAGATTTCGAAATAAACCGTTCCTATTTTTTTGACAGTAGCATCCGCAAGTTTGATAGTTCCACGACAGG ] [+] EMBL CD163027 [ CCGAATCATAACCTTGCTTCCGTAAAGCCACTGCTGCTGTTTTAGAATTAGAGAGTGCTGACAACCATGCTAATTGCTCACTCTCAGAGTTAGCCTTTATATGAAATTTTTGTGCACTGCTATTTGAGATTTCGAAATAAACCGTTCCTATTTTTTTGACAGTAGCATCCGCAAGTTTGATAGTTCCACGACAGGTATGAGCCATCTCTGCTGGATTCCTGTAATACGACAACAAGCCATATTGTAATACGAACCATCTTTTTTGATATCCCTTCAAATAATTTGTCCACTTATAAAGGTAACCTTTCATACAATCCCTCTCGAGACTTAGGTCCA] consensusID : consensus_9621#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 656 fasta sequence [AGTTAAAACGTTGCAATAGTTCAGTGGGATCACGAGCAGATTCTACATCACCGACAGAACGCCGAAGTTCTTCACCTTTTCGATTCATTGTCAACTGATAACGTTCGAGATCAGTCACATGGGCTTCCAGTTTCACAAGCGCATCGTTAATAAACCTAATTCCATTCTCATCAGTCGTAGACGATGTCTTGTAATCATCATCATCTTCATATCCATCAGCATACACATCCGAATCATAACCATATGTACACAAGATATATGCTATCGAATAACGAGGTTTTGCTGACTTGCTTCCGTAAAGCCACTGCTGCTGTTTTAGAATTAGAGAGTGCTGACAACCATGCTAATTGCTCACTCTCAGAGTATGCCTTTATATGAAATTTTTGTGCACTGCTATTTGAGATTTCGAAATAAACCGTTCCTATTTTTTTGACAGTAGCATCCGCAAGTTTGATAGTTCCACGACAGGTATGAGCCATCTCTGCTGGATTCCTGTAATACCGAC-ACAAGCCATTTTGTAATACGAACCATCTTTTTTGATATCCCTTC-AATAATTTGTCCACTTATAAAGGTAACCTTTCATACCATCCCTCTCGAGACTTAGATCCATTGGAATCCAAGGCCAACCAAGGTGCGTTTTTTTTTTTTTTTTTTTT] [+] EMBL CD153851 [AGTTAAAACGTTGCAATAGTTCAGTGGGATCACGAGCAGATTCTACATCACCGACAGAACGCCGAAGTTCTTCACCTTTTCGATTCATTGTCAACTGATAACGTTCGAGATCAGTCACATGGGCTTCCAGTTTCACAAGCGCATCGTTAATAAACCTAATTCCATTCTCATCAGTCGTAGACGATGTCTTGTAATCATCATCATCTTCATATCCATCAGCATACACATCCGAATCATAACCATATGTACACAAGATATATGCTATCGAATAACGAGGTTTTGCTGACTTGCTTCCGTAAAGCCACTGCTGCTGTTTTAGAATTAGAGAGTGCTGACAACCATGCTAATTGCTCACTCTCAGAGTATGCCTTTATATGAAATTTTTGTGCACTGCTATTTGAGATTTCGAAATAAACCGTTCCTATTTTTTTGACAGTAGCATCCGCAAGTTTGATAGTTCCACGACAGGTATGAGCCATCTCTGCTGGATTCCTGTAATACCGAC ACAAGCCATTTTGTAATACGAACCATCTTTTTTGATATCCCTTC AATAATTTGTCCACTTATAAAGGTAACCTTTCATACCATCCCTCTCGAGACTTAGATCCATTGGA ] [-] EMBL CD088803 [ AGAGAGTGCTGACAACCATGCTAATTGCTCACTCTCAGAGTTAGCCTTTATATGAAATTTTTGTGCACTGCTATTTTAGATTTCGAAATAAACCGTTCCTATTTTTTTGACAGTAGCATCCGCAAGTTTGATAGTTCCACGACAGGTATGAGCCATCTCTGCTGGATTCCTGTAATA CGACAACAAGCCATTTTGTAATACGAACCATCTTTTTTGATATCCCTTCAAATAATTTGTCCACTTATAAAGGTAACCTTTCATACAATCCCTCTCGAGACTTAGATCCATTGGAATCCAAGGCCAACCAAGGTGCGTTTTTTTTTTTTTTTTTTTT] consensusID : consensus_9621#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence [GAATTAGAGAGTGCTGACAACCATGCTAATTGTTCAATCATTTGTTCAAGTAAAGCACAACGTTCATTTTGATGATTGAATATACGCTGCCATCGTACAAACTGTCCACGAGTAAAATGGGTAAATTCAGAACAAGAATTAACCTTTGTCATACTGGCAACCTTGAAAACTGTGGGACGTTCACGAGCCAAGTTAAAACGT] [-] EMBL CD160456 [GAATTAGAGAGTGCTGACAACCATGCTAATTGTTCAATCATTTGTTCAAGTAAAGCACAACGTTCATTTTGATGATTGAATATACGCTGCCATCGTACAAACTGTCCACGAGTAAAATGGGTAAATTCAGAACAAGAATTAACCTTTGTCATACTGGCAACCTTGAAAACTGTGGGACGTTCACGAGCCAAGTTAAAACGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9621#0 TTGTATAAATTCCCTAGAGTGAGGAAAATGATGAGCGGACGATTCTAATGAGATGATATG 60 consensus_9621#2 ------------------------------------------------------------ consensus_9621#1 ----AGTTAAAACGTTGCAATAGTTCAGTGGGATCACGAGCAGATTCTACATCACCGACA 56 consensus_9621#0 CTTTTCTGAGGCTTTCAAAGACTTGTCAGCACAAATATTTGAATATTCTTTACTAACATC 120 consensus_9621#2 ------------------------------------------------------------ consensus_9621#1 GAACGCCGAAGTTCTTCACCTTTTCGATTCATTGTCAACTGATAACGTTCGAGATCAGTC 116 consensus_9621#0 AGATGTTGTAGTATCATGAGCAATATCCAATGAAGAGGTGACGTTTTCTTCCTGAGGATG 180 consensus_9621#2 ------------------------------------------------------------ consensus_9621#1 ACATGGGCTTCCAGTTTCACAAGCGCATCGTTAATAAACCTAATTCCATTCTCATCAGTC 176 consensus_9621#0 CGCCTCAGTATGTGGTAAGTGCTGTACACGGACTGCTTGGCCAAGAGGTCGGCTAACAGA 240 consensus_9621#2 ------------------------------------------------------------ consensus_9621#1 GTAGACGATGTCTTGTAATCATCATCATCTTCATATCCATCAGCATACACATCCGAATCA 236 consensus_9621#0 CTTGATGTTAAGAGATGAACTGACAGTTCCGCCACCTGATCCAAGTGTTACGGTTGATTG 300 consensus_9621#2 ------------------------------------------------------------ consensus_9621#1 TAACCATATGTACACAAGATATATGCTATCGAATAACGAGGTTTTGCTGACTTGCTTCCG 296 consensus_9621#0 TGGATTATTTTGTCTTGTTAAACATTCTAACTGACGTAACTGTTTAGCTAATTGTTCAAT 360 consensus_9621#2 ----------------------GAATTAGAGAGTGCTGACAACCATGCTAATTGTTCAAT 38 consensus_9621#1 TAAAGCCACTGCTGCTGTTTTAGAATTAGAGAGTGCTGACAACCATGCTAATTGCTCACT 356 * * * * * ** ******** *** * consensus_9621#0 C-------ATTTGTTCAAGTAAA------GCACAACGTTCATTTTGATGATTGAATATAC 407 consensus_9621#2 C-------ATTTGTTCAAGTAAA------GCACAACGTTCATTTTGATGATTGAATATAC 85 consensus_9621#1 CTCAGAGTATGCCTTTATATGAAATTTTTGTGCACTGCTATTTGAGATTTCGAAATAAAC 416 * ** ** * * ** * ** * * ** *** **** ** consensus_9621#0 -GCTGCCATCGTACAAACTGTC-CACGAGTAAAATGCGTAAATTCAGAACAAGAATTACC 465 consensus_9621#2 -GCTGCCATCGTACAAACTGTC-CACGAGTAAAATGGGTAAATTCAGAACAAGAATTAAC 143 consensus_9621#1 CGTTCCTATTTTTTTGACAGTAGCATCCGCAAGTTTGATAGTTCCACGACAGGTATGAGC 476 * * * ** * ** ** ** * ** * ** * ** *** * ** * * consensus_9621#0 CATTGCCATACTGGCAACCTTGAAAACTGTGGCACGTTCACGAGCCAAGTTAAAACGTTG 525 consensus_9621#2 CTTTGTCATACTGGCAACCTTGAAAACTGTGGGACGTTCACGAGCCAAGTTAAAACGT-- 201 consensus_9621#1 CAT--CTCTGCTGGATTCCTGTAATACCGACACAAGC-CATTTTGTAATACGAACCATCT 533 * * * **** *** ** ** * * * ** ** ** * * consensus_9621#0 CAATAGTTCAGTGGGATCACGAGCAGATTCTACATCACCGACAGAACGCCGAAGTTCTTC 585 consensus_9621#2 ------------------------------------------------------------ consensus_9621#1 TTTTTGATATCCCTTCAATAATTTGTCCACTTATAAAGGTAACCTTTCATACCATCCCTC 593 consensus_9621#0 ACCTTTTCGATTCATTGTCAACTGATAACGTTCGAGATCAGTCACATGGGCTTCCAGTTT 645 consensus_9621#2 ------------------------------------------------------------ consensus_9621#1 TCGAGACTTAGATCCATTGGAATCCAAGGCCAACCAAGGTGCGTTTTTTTTTTTTTTTTT 653 consensus_9621#0 CACAAGCGCATCGTTAATAAACCTAATTCCATTCTCATCAGTCGTAGACGATGTCTTGTA 705 consensus_9621#2 ------------------------------------------------------------ consensus_9621#1 TTT--------------------------------------------------------- 656 consensus_9621#0 ATCATCATCATCTTCATATCCATCAGCATACGCATCCGAATCATAACCTTGCTTCCGTAA 765 consensus_9621#2 ------------------------------------------------------------ consensus_9621#1 ------------------------------------------------------------ consensus_9621#0 AGCCACTGCTGCTGTTTTAGAATTAGAGAGTGCTGACAACCATGCTAATTGCTCACTCTC 825 consensus_9621#2 ------------------------------------------------------------ consensus_9621#1 ------------------------------------------------------------ consensus_9621#0 AGAGTTAGCCTTTATATGAAATTTTTGTGCACTGCTATTTGAGATTTCGAAATAAACCGT 885 consensus_9621#2 ------------------------------------------------------------ consensus_9621#1 ------------------------------------------------------------ consensus_9621#0 TCCTATTTTTTTGACAGTAGCATCCGCAAGTTTGATAGTTCCACGACAGGTATGAGCCAT 945 consensus_9621#2 ------------------------------------------------------------ consensus_9621#1 ------------------------------------------------------------ consensus_9621#0 CTCTGCTGGATTCCTGTAATACGACAACAAGCCATATTGTAATACGAACCATCTTTTTTG 1005 consensus_9621#2 ------------------------------------------------------------ consensus_9621#1 ------------------------------------------------------------ consensus_9621#0 ATATCCCTTCAAATAATTTGTCCACTTATAAAGGTAACCTTTCATACAATCCCTCTCGAG 1065 consensus_9621#2 ------------------------------------------------------------ consensus_9621#1 ------------------------------------------------------------ consensus_9621#0 ACTTAGGTCCA 1076 consensus_9621#2 ----------- consensus_9621#1 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||