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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9621#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1076 fasta sequence
[TTGTATAAATTCCCTAGAGTGAGGAAAATGATGAGCGGACGATTCTAATGAGATGATATGCTTTTCTGAGGCTTTCAAAGACTTGTCAGCACAAATATTTGAATATTCTTTACTAACATCAGATGTTGTAGTATCATGAGCAATATCCAATGAAGAGGTGACGTTTTCTTCCTGAGGATGCGCCTCAGTATGTGGTAAGTGCTGTACACGGACTGCTTGGCCAAGAGGTCGGCTAACAGACTTGATGTTAAGAGATGAACTGACAGTTCCGCCACCTGATCCAAGTGTTACGGTTGATTGTGGATTATTTTGTCTTGTTAAACATTCTAACTGACGTAACTGTTTAGCTAATTGTTCAATCATTTGTTCAAGTAAAGCACAACGTTCATTTTGATGATTGAATATACGCTGCCATCGTACAAACTGTCCACGAGTAAAATGCGTAAATTCAGAACAAGAATTACCCATTGCCATACTGGCAACCTTGAAAACTGTGGCACGTTCACGAGCCAAGTTAAAACGTTGCAATAGTTCAGTGGGATCACGAGCAGATTCTACATCACCGACAGAACGCCGAAGTTCTTCACCTTTTCGATTCATTGTCAACTGATAACGTTCGAGATCAGTCACATGGGCTTCCAGTTTCACAAGCGCATCGTTAATAAACCTAATTCCATTCTCATCAGTCGTAGACGATGTCTTGTAATCATCATCATCTTCATATCCATCAGCATACGCATCCGAATCATAACCTTGCTTCCGTAAAGCCACTGCTGCTGTTTTAGAATTAGAGAGTGCTGACAACCATGCTAATTGCTCACTCTCAGAGTTAGCCTTTATATGAAATTTTTGTGCACTGCTATTTGAGATTTCGAAATAAACCGTTCCTATTTTTTTGACAGTAGCATCCGCAAGTTTGATAGTTCCACGACAGGTATGAGCCATCTCTGCTGGATTCCTGTAATACGACAACAAGCCATATTGTAATACGAACCATCTTTTTTGATATCCCTTCAAATAATTTGTCCACTTATAAAGGTAACCTTTCATACAATCCCTCTCGAGACTTAGGTCCA]
[+] EMBL CD111879 [TTGTATAAATTCCCTAGAGTGAGGAAAATGATGAGCGGACGATTCTAATGAGATGATATGCTTTTCTGAGGCTTTCAAAGACTTGTCAGCACAAATATTTGAATATTCTTTACTAACATCAGATGTTGTAGTATCATGAGCAATATCCAATGAAGAGGTGACGTTTTCTTCCTGAGGATGCGCCTCAGTATGTGGTAAGTGCTGTACACGGACTGCTTGGCCAAGAGGTCGGCTAACAGACTTGATGTTAAGAGATGAACTGACAGTTCCGCCACCTGATCCAAGTGTTACGGTTGATTGTGGATTATTTTGTCTTGTTAAACATTCTAACT ]
[+] EMBL CD111857 [TTGTATAAATTCCCTAGAGTGAGGAAAATGATGAGCGGACGATTCTAATGAGATGATATGCTTTTCTGAGGCTTTCAAAGACTTGTCAGCACAAATATTTGAATATTCTTTACTAACATCAGATGTTGTAGTATCATGAGCAATATCCAATGAAGAGGTGACGTTTTCTTCCTGAGGATGCGCCTCAGTATGTGGTAAGTGCTGTACACGGACTGCTTGGCCAAGAGGTCGGCTAACAGACTTGATGTTAAGAGATGAACTGACAGTTCCGCCACCTGATCCAAGTGTTACGGTTGATTGTGGATTATTTTGTCTTGGTAAACATTCTA ]
[-] EMBL CD195172 [ AATGAGATGATATGCTTTTTTGAGGCTTTCAAAGACTTGTCAGCACAAATATTTGAATATTCTTTACTAACATCAGATGTTGTAGTATCATGAGCAATATCCAATGAAGAGGTGACGTTTTCTTCCTGAGGATGCGCCTCAGTATGTGGTAAGTGCTGTACACGGACTGCTTGGCCAAGAGGTCGGCTAACAGACTTGATGTTAAGAGATGAACTGACAGTTCCGCCACCTGATCCAAGTGTTACGGTTGATTGTGGATTATTTTGTCTTGTTAAACATTCTAACTGACGTAACTGTTTAGCTAATTGTTCAATCATTTGTTCAAGTAAAGCACAACGTTCATTTTGATGATTGAATATACGCTGCCATCGTACAAACTGTCCACGAGTAAAATGCGTAAATTCAGAACAAGAATTACCCATTGCCATACTGGCAACCTTGAAAACTGTGGCACGTTCACGAGCCAAGTTAAAACGTTGCAATAGTTC ]
[-] EMBL CD162957 [ AAATTCAGAACAAGAATTAACCATTGCCATACTGGCAACCTTGAAAACTGTGGCACGTTCACGAGCCAAGTTAAAACGTTGCAATAGTTCAGTGGGATCACGAGCAGATTCTACATCACCGACAGAACGCCGAAGTTCTTCACCTTTTCGATTCATTGTCAACTGATAACGTTCGAGATCAGTCACATGGGCTTCCAGTTTCACAAGCGCATCGTTAATAAACCTAATTCCATTCTCATCAGTCGTAGACGATGTCTTGTAATCATCATCATCTTCATATCCATCAGCATACGCATCCGAATCATAACCTTGCTTCCGTA ]
[-] EMBL CD154003 [ GTTAAAACGTTGCAATAGTTCAGTGGGATAACGAGCAGATTCTACATCACCGACAGAACGCCGAAGTTCTTCACCTTTTCGATTCATTGTCAACTGATAACGTTCGAGATCAGTCACATGGGCTTCCAGTTTCACAAGCGCATCGTTAATAAACCTAATTCCATTCTCATCAGTCGTAGACGATGTCTTGTAATCATCATCATCTTCATATCCATCAGCATACGCATCCGAATCATAACCTTGCTTCCGTAAAGCCACTGCTGCTGTTTTAGAATTAGAGAGTGCTGACAACCATGCTAATTGCTCACTCTCAGAGTTAGCCTTCATATGAAATTTTTGTGCACTGCTATTTGAGATTTCGAAATAAACCGTTCCTATTTTTTTGACAGTAGCATCCGCAAGTTTGATAGTTCCACGACAGGTATGAGCCATCTCTGCTGGATTCCTG ]
[-] EMBL CD112027 [ ATTCATTGTCAACTGATAACGTTCGAGATCAGTCACATGGGCTTCCAGTTNCACAAGCGCATCGTTAATAAACCTAATTCCATTCTCATCAGTCGTAGACGATGTCTTGTAATCATCATCATCTTCATATCCATCAGCATACGCATCCGAATCATAACCTTGCTTCCGTAAAGCCACTGCTGCTGTTTTAGAATTAGAGAGTGCTGACAACCATGCTAATTGCTCACTCTCAGAGTTAGCCTTTATATGAAATTTTTGTGCACTGCTATTTGAGATTTCGAAATAAACCGTTCCTATTTTTTTGACAGTAGCATCCGCAAGTTTGATAGTTCCACGACAGG ]
[+] EMBL CD163027 [ CCGAATCATAACCTTGCTTCCGTAAAGCCACTGCTGCTGTTTTAGAATTAGAGAGTGCTGACAACCATGCTAATTGCTCACTCTCAGAGTTAGCCTTTATATGAAATTTTTGTGCACTGCTATTTGAGATTTCGAAATAAACCGTTCCTATTTTTTTGACAGTAGCATCCGCAAGTTTGATAGTTCCACGACAGGTATGAGCCATCTCTGCTGGATTCCTGTAATACGACAACAAGCCATATTGTAATACGAACCATCTTTTTTGATATCCCTTCAAATAATTTGTCCACTTATAAAGGTAACCTTTCATACAATCCCTCTCGAGACTTAGGTCCA]
consensusID : consensus_9621#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 656 fasta sequence
[AGTTAAAACGTTGCAATAGTTCAGTGGGATCACGAGCAGATTCTACATCACCGACAGAACGCCGAAGTTCTTCACCTTTTCGATTCATTGTCAACTGATAACGTTCGAGATCAGTCACATGGGCTTCCAGTTTCACAAGCGCATCGTTAATAAACCTAATTCCATTCTCATCAGTCGTAGACGATGTCTTGTAATCATCATCATCTTCATATCCATCAGCATACACATCCGAATCATAACCATATGTACACAAGATATATGCTATCGAATAACGAGGTTTTGCTGACTTGCTTCCGTAAAGCCACTGCTGCTGTTTTAGAATTAGAGAGTGCTGACAACCATGCTAATTGCTCACTCTCAGAGTATGCCTTTATATGAAATTTTTGTGCACTGCTATTTGAGATTTCGAAATAAACCGTTCCTATTTTTTTGACAGTAGCATCCGCAAGTTTGATAGTTCCACGACAGGTATGAGCCATCTCTGCTGGATTCCTGTAATACCGAC-ACAAGCCATTTTGTAATACGAACCATCTTTTTTGATATCCCTTC-AATAATTTGTCCACTTATAAAGGTAACCTTTCATACCATCCCTCTCGAGACTTAGATCCATTGGAATCCAAGGCCAACCAAGGTGCGTTTTTTTTTTTTTTTTTTTT]
[+] EMBL CD153851 [AGTTAAAACGTTGCAATAGTTCAGTGGGATCACGAGCAGATTCTACATCACCGACAGAACGCCGAAGTTCTTCACCTTTTCGATTCATTGTCAACTGATAACGTTCGAGATCAGTCACATGGGCTTCCAGTTTCACAAGCGCATCGTTAATAAACCTAATTCCATTCTCATCAGTCGTAGACGATGTCTTGTAATCATCATCATCTTCATATCCATCAGCATACACATCCGAATCATAACCATATGTACACAAGATATATGCTATCGAATAACGAGGTTTTGCTGACTTGCTTCCGTAAAGCCACTGCTGCTGTTTTAGAATTAGAGAGTGCTGACAACCATGCTAATTGCTCACTCTCAGAGTATGCCTTTATATGAAATTTTTGTGCACTGCTATTTGAGATTTCGAAATAAACCGTTCCTATTTTTTTGACAGTAGCATCCGCAAGTTTGATAGTTCCACGACAGGTATGAGCCATCTCTGCTGGATTCCTGTAATACCGAC ACAAGCCATTTTGTAATACGAACCATCTTTTTTGATATCCCTTC AATAATTTGTCCACTTATAAAGGTAACCTTTCATACCATCCCTCTCGAGACTTAGATCCATTGGA ]
[-] EMBL CD088803 [ AGAGAGTGCTGACAACCATGCTAATTGCTCACTCTCAGAGTTAGCCTTTATATGAAATTTTTGTGCACTGCTATTTTAGATTTCGAAATAAACCGTTCCTATTTTTTTGACAGTAGCATCCGCAAGTTTGATAGTTCCACGACAGGTATGAGCCATCTCTGCTGGATTCCTGTAATA CGACAACAAGCCATTTTGTAATACGAACCATCTTTTTTGATATCCCTTCAAATAATTTGTCCACTTATAAAGGTAACCTTTCATACAATCCCTCTCGAGACTTAGATCCATTGGAATCCAAGGCCAACCAAGGTGCGTTTTTTTTTTTTTTTTTTTT]
consensusID : consensus_9621#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence
[GAATTAGAGAGTGCTGACAACCATGCTAATTGTTCAATCATTTGTTCAAGTAAAGCACAACGTTCATTTTGATGATTGAATATACGCTGCCATCGTACAAACTGTCCACGAGTAAAATGGGTAAATTCAGAACAAGAATTAACCTTTGTCATACTGGCAACCTTGAAAACTGTGGGACGTTCACGAGCCAAGTTAAAACGT]
[-] EMBL CD160456 [GAATTAGAGAGTGCTGACAACCATGCTAATTGTTCAATCATTTGTTCAAGTAAAGCACAACGTTCATTTTGATGATTGAATATACGCTGCCATCGTACAAACTGTCCACGAGTAAAATGGGTAAATTCAGAACAAGAATTAACCTTTGTCATACTGGCAACCTTGAAAACTGTGGGACGTTCACGAGCCAAGTTAAAACGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9621#0 TTGTATAAATTCCCTAGAGTGAGGAAAATGATGAGCGGACGATTCTAATGAGATGATATG 60
consensus_9621#2 ------------------------------------------------------------
consensus_9621#1 ----AGTTAAAACGTTGCAATAGTTCAGTGGGATCACGAGCAGATTCTACATCACCGACA 56
consensus_9621#0 CTTTTCTGAGGCTTTCAAAGACTTGTCAGCACAAATATTTGAATATTCTTTACTAACATC 120
consensus_9621#2 ------------------------------------------------------------
consensus_9621#1 GAACGCCGAAGTTCTTCACCTTTTCGATTCATTGTCAACTGATAACGTTCGAGATCAGTC 116
consensus_9621#0 AGATGTTGTAGTATCATGAGCAATATCCAATGAAGAGGTGACGTTTTCTTCCTGAGGATG 180
consensus_9621#2 ------------------------------------------------------------
consensus_9621#1 ACATGGGCTTCCAGTTTCACAAGCGCATCGTTAATAAACCTAATTCCATTCTCATCAGTC 176
consensus_9621#0 CGCCTCAGTATGTGGTAAGTGCTGTACACGGACTGCTTGGCCAAGAGGTCGGCTAACAGA 240
consensus_9621#2 ------------------------------------------------------------
consensus_9621#1 GTAGACGATGTCTTGTAATCATCATCATCTTCATATCCATCAGCATACACATCCGAATCA 236
consensus_9621#0 CTTGATGTTAAGAGATGAACTGACAGTTCCGCCACCTGATCCAAGTGTTACGGTTGATTG 300
consensus_9621#2 ------------------------------------------------------------
consensus_9621#1 TAACCATATGTACACAAGATATATGCTATCGAATAACGAGGTTTTGCTGACTTGCTTCCG 296
consensus_9621#0 TGGATTATTTTGTCTTGTTAAACATTCTAACTGACGTAACTGTTTAGCTAATTGTTCAAT 360
consensus_9621#2 ----------------------GAATTAGAGAGTGCTGACAACCATGCTAATTGTTCAAT 38
consensus_9621#1 TAAAGCCACTGCTGCTGTTTTAGAATTAGAGAGTGCTGACAACCATGCTAATTGCTCACT 356
* * * * * ** ******** *** *
consensus_9621#0 C-------ATTTGTTCAAGTAAA------GCACAACGTTCATTTTGATGATTGAATATAC 407
consensus_9621#2 C-------ATTTGTTCAAGTAAA------GCACAACGTTCATTTTGATGATTGAATATAC 85
consensus_9621#1 CTCAGAGTATGCCTTTATATGAAATTTTTGTGCACTGCTATTTGAGATTTCGAAATAAAC 416
* ** ** * * ** * ** * * ** *** **** **
consensus_9621#0 -GCTGCCATCGTACAAACTGTC-CACGAGTAAAATGCGTAAATTCAGAACAAGAATTACC 465
consensus_9621#2 -GCTGCCATCGTACAAACTGTC-CACGAGTAAAATGGGTAAATTCAGAACAAGAATTAAC 143
consensus_9621#1 CGTTCCTATTTTTTTGACAGTAGCATCCGCAAGTTTGATAGTTCCACGACAGGTATGAGC 476
* * * ** * ** ** ** * ** * ** * ** *** * ** * *
consensus_9621#0 CATTGCCATACTGGCAACCTTGAAAACTGTGGCACGTTCACGAGCCAAGTTAAAACGTTG 525
consensus_9621#2 CTTTGTCATACTGGCAACCTTGAAAACTGTGGGACGTTCACGAGCCAAGTTAAAACGT-- 201
consensus_9621#1 CAT--CTCTGCTGGATTCCTGTAATACCGACACAAGC-CATTTTGTAATACGAACCATCT 533
* * * **** *** ** ** * * * ** ** ** * *
consensus_9621#0 CAATAGTTCAGTGGGATCACGAGCAGATTCTACATCACCGACAGAACGCCGAAGTTCTTC 585
consensus_9621#2 ------------------------------------------------------------
consensus_9621#1 TTTTTGATATCCCTTCAATAATTTGTCCACTTATAAAGGTAACCTTTCATACCATCCCTC 593
consensus_9621#0 ACCTTTTCGATTCATTGTCAACTGATAACGTTCGAGATCAGTCACATGGGCTTCCAGTTT 645
consensus_9621#2 ------------------------------------------------------------
consensus_9621#1 TCGAGACTTAGATCCATTGGAATCCAAGGCCAACCAAGGTGCGTTTTTTTTTTTTTTTTT 653
consensus_9621#0 CACAAGCGCATCGTTAATAAACCTAATTCCATTCTCATCAGTCGTAGACGATGTCTTGTA 705
consensus_9621#2 ------------------------------------------------------------
consensus_9621#1 TTT--------------------------------------------------------- 656
consensus_9621#0 ATCATCATCATCTTCATATCCATCAGCATACGCATCCGAATCATAACCTTGCTTCCGTAA 765
consensus_9621#2 ------------------------------------------------------------
consensus_9621#1 ------------------------------------------------------------
consensus_9621#0 AGCCACTGCTGCTGTTTTAGAATTAGAGAGTGCTGACAACCATGCTAATTGCTCACTCTC 825
consensus_9621#2 ------------------------------------------------------------
consensus_9621#1 ------------------------------------------------------------
consensus_9621#0 AGAGTTAGCCTTTATATGAAATTTTTGTGCACTGCTATTTGAGATTTCGAAATAAACCGT 885
consensus_9621#2 ------------------------------------------------------------
consensus_9621#1 ------------------------------------------------------------
consensus_9621#0 TCCTATTTTTTTGACAGTAGCATCCGCAAGTTTGATAGTTCCACGACAGGTATGAGCCAT 945
consensus_9621#2 ------------------------------------------------------------
consensus_9621#1 ------------------------------------------------------------
consensus_9621#0 CTCTGCTGGATTCCTGTAATACGACAACAAGCCATATTGTAATACGAACCATCTTTTTTG 1005
consensus_9621#2 ------------------------------------------------------------
consensus_9621#1 ------------------------------------------------------------
consensus_9621#0 ATATCCCTTCAAATAATTTGTCCACTTATAAAGGTAACCTTTCATACAATCCCTCTCGAG 1065
consensus_9621#2 ------------------------------------------------------------
consensus_9621#1 ------------------------------------------------------------
consensus_9621#0 ACTTAGGTCCA 1076
consensus_9621#2 -----------
consensus_9621#1 -----------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||