|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9625#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 822 fasta sequence
[AGAACTAGGTGTTTTTTTATTTTTATCTATACATATACCTCCAAGTTTATTCATATGCACTTCTCTCGCACTGTGTGTGTGCCACTGTGTGTTTATGCGAATCTTCTTTGACCGAGTTTTTTTCTTTACTTGTTTATTAATCTCTGGAATGTATTGAAGGTCAACTAACCACGCATGTCTTCAATTTCACACCTCACACTGCTACCTTGTATACACCACTCTTTTCTCGTAAAGTAGTGTGGATTAATCAATCATCATTGTTATCATTATTATTATTATACATATGTGTGATTTATGACTAGTTTTCTACGAGGAATGTTTTAGTGTTATTTTCTTCTTTCTTCCTCTTCTCCCACCTCCTCGTACTCTTTTCTTTACATTAACGATGTAGTTTACAGAGTATTTTCTACTTTATTGTTTTGTTTCGAACATGTGTTGGTGAAAAATGAAGAAATGTTTCCCCTTATTGTCTTTATACTTCACACACACACATAGAGCCTTATGATGAATACCAGTAACAAAATATGTACAGTCGCATTCATTATTACTACTGCTATACTACCTATACAGCAATCTAGTTGGGAGTAAGCCACTGAATTTTTTTACAACTTTGGTGTTTTTTGATAGTCATTCTTTACAAAAAACTCGATGTCGATCATGTGTAACAGTGTTCTCTCTCTGTGTACGTGTGTATTTTACTCATAATTCTCATTGNTGNTNTTGNTGNTATTGCCTTTGTCATAAGCTCTTTCTTAAAGAATTTTTTTTGTGAAATTCCTTGTACAGTTATCANTANTANTANTANTANTANTANTANTANTG]
[+] EMBL CD082896 [AGAACTAGGTGTTTTTTTATTTTTATCTATACATATACCTCCAAGTTTATTCATATGCACTTCTCTCGCACTGTGTGTGTGCCACTGTGTGTTTATGCGAATCTTCTTTGACCGAGTTTTTTTCTTTACTTGTTTATTAATCTCTGGAATGTATTGAAGGTCAACTAACCACGCATGTCTTCAATTTCACACCTCACACTGCTACCTTGTATACACCACTCTTTTCTCGTAAAGTAGTGTGGATTAATCAATCATCATTGTTATCATTATTATTATTATACATATGTGTGATTTATGACTAGTTTTCTACGAGGAATGTTTTAGTGTTATTTTCTTCTTTCTTCCTCTTCTCCCACCTCCTCGTACTCTTTTCTTTACATTAACGATGTAGTTTACAGAGTATTTTCTACTTTATTGTTTTGTTTCGAACATGTGTTGGTGAAAAATGAAGAAATGTTTCCCCTTATTGTC ]
[+] EMBL CD078820 [ GGAATGTATTGAAGGTCAACTAACCACGCATGTCTTCAATTTCACACCTCACACTGCTACCTTGTATACACCACTCTTTTCTCGTAAAGTAGTGTGGATTAATCAATCATCATTGTTATCATTATTATTATTATACATATGTGTGATTTATGACTAGTTTTCTACGAGGAATGTTTTAGTGTTATTTTCTTCTTTCTTCCTCTTCTCCCACCTCCTCGTACTCTTTTCTTTACATTAACGATGTAGTTTACAGAGTATTTTCTACTTTATTGTTTTGTTTCGAACATGTGTTGGTGAAAAATGAAGAAATGTTTCCCCTTATTGTCTTTATACTTCACACACACACATAGAGCCTTATGATGAATACCAGTAACAAAATATGTACAGTCGCATTCATTATTACTACTGCTATACTACCTATACAGCAATCTAGTTGGGAGTAAGCCACTGAATTTTTTTACAACTTTGGTGTTTTTTGATAGTCATTCTTTACAAAAAACTCGATGTCGATCATGTGTAACAGTGTTCTCTCTCTGTGTACGTGTGTATTTTACTCATAATTCTCATTGNTGNTNTTGNTGNTATTGCCTTTGTCATAAGCTCTTTCTTAAAGAATTTTTTTTGTGAAATTCCTTGTACAGTTATCANTANTANTANTANTANTANTANTANTANTG]
[-] EMBL CD073280 [ TTTTTCCTCTTCTCCCACCTCCTCGTACTCTTTTCTTTACATTAACGATGTAGTTTACAGAGTATTTTCTACTTTATTGTTTTGTTTCGAACATGTGTTGGTGAAAAATGAAGAAATGTTTCCCCTTATTGTCTTTATACTTCACACACACACATAGAGCCTTATGATGAATACCAGTAACAAAATATGTACAGTCGCATTCATTATTACTACTGCTATACTACCTATACAGCAATTTAGTTGGGAGTAAGCCACTGAATTTTTTTACAACTTTGGTGTTTTTTGATAGTCATTCTTTACAAAAAACTCGATGTCGATCATGTGTAACAGTGTTCTCTCTCTGTGTACGTGTGTATTTTACTCATAATTCTCATTGTTGTTTTTGTTGTTATTGCCTTTGTCATAAGCTCTTTCTTAAAGAATTTTTTTTGTGAAATTCCTTGTACAGTTATCAATAATAATAATAATAATAATAATAATAATG]
consensusID : consensus_9625#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 751 fasta sequence
[TGTAGTTTCCAGAGTATTTTCTACTTTATTGTTTTGTTTCGAACATGTGTTGGTGAAAAATAAAGAAATGTTTCCCCTTATTGTCTTTATACTTCCCCCCCCCCCATAGACCCTTATGATGAATCCCAGTACCAAAATATGTCCAGTCGCATTCATTATTACTACTGCTATACTCCCTATCCACCAATTTAGTTGGGAGTAACCCCCTGAATTTTTTTTCCAACTTTGGTGTTTTTTGATAGTCATTCTTTCCAAAAAACTCGATGTCGATCATGTGTAACAGTGTTCTCTCTCTGTGTACGTGTGTATTTTACTCATAATTCTCATTGTTGTTTTTGTTGTTATTGCCTTTGTCATAAGCTCTTTCTTAAAGAA-TTTTTTTTGTGAAATTCCTTGTACAGTTATCAATAATAATAATAATAATAATAATAATAATGGTAAAAGCCAACAATGATTGCTACTACTTACAATTTCGTTACACGTTACATGATCTGATGTCTGAAAAATCAAAGCGACCTATGAAAATATGAAGGGCAAGTTTGGGATTCATTTTTCTCAGCATACTTATAGGTGTTGCAAACATGCTGTTTGTTTTTATGCACACACCACAGTTTTTTTCTGTCCGTCTACGCTTACATATAATAATGATGATTATCTAGTCACACTATAAATAGCAATCAATAAAAAAGTACCCTGTGTTCCTCTGCTTATCAATCAGTGTAATCATTACTTCGAGTCGATTAGATGTGAT]
[-] EMBL CD076480 [TGTAGTTTCCAGAGTATTTTCTACTTTATTGTTTTGTTTCGAACATGTGTTGGTGAAAAATAAAGAAATGTTTCCCCTTATTGTCTTTATACTTCCCCCCCCCCCATAGACCCTTATGATGAATCCCAGTACCAAAATATGTCCAGTCGCATTCATTATTACTACTGCTATACTCCCTATCCACCAATTTAGTTGGGAGTAACCCCCTGAATTTTTTTTCCAACTTTGGTGTTTTTTGATAGTCATTCTTTCCAAAAAACTCGATGTCGATCATGTGTACCAGTGTTCTCTCTCTGGGTACGGGGGTATTTTACTCATAATTCTCATTGTTGTTTTTGTTGTTATTCCCTTTGTCATAAGCTCTTTTTTAAAGAATTTTTTTTTGTGAAATTCCTTGTCCAGTTATCAATAATAATAATAATAATAATAATg ]
[+] EMBL AA559544 [ agTTTTTTTTACAACTTTGGTGTTTTTTGATAGTCATNCTTTACAAAAAACTCGATGTCGATCATGTGTAACAGTGTCCTCTCTCTGTGTACGTGTGTATTTNACTCATAATNCTCATTGTTGTTTTTGTTGTTATTGCCTTTGTCATAAGCTCTTTCTTAAANAA TTTTTTTNGTGAAATNCCTTGTACAGTTATCAATAATAATAATAATAATAAT ]
[-] EMBL CD147110 [ TGTCGATCATGTGTAACAGTGTTCTCTCTCTGTGTACGTGTGTATTTTACTCATAATTCTCATTGTTGTTTTTGTTGTTATTGCCTTTGTCATAAGCTCTTTCTTAAAGAA TTTTTTTTGTGAAATTCCTTGTACAGTTATCAATAATAATAATAATAATAATAATAATAATGGTAAAAGCCAACAATGATTGCTACTACTTACAATTTCGTTACACGTTACATGATCTGATGTCTGAAAAATCAAAGCGACCTATGAAAATATGAAGGGCAAGTTTGGGATTCATTTTTCTCAGCATACTTATAGGTGTTGCAAACATGCTGTTTGTTTTTATGCACACACCACAGTTTTTTTCTGTCCGTCTACGCTTACATATAATAATGATGATTATCTAGTCACACTATAAATAGCAATCAATAAAAAAGTACCCTGTGTTCCTCTGCTTATCAATCAGTGTAATCATTACTTCGAGTCGATTAGATGTGAT]
[-] EMBL CD147051 [ TGTAACAGTGTTCTCTCTCTGTGTACGTGTGTATTTTACTCATAATTCTCATTGTTGTTTTTGTTGTTATTGCCTTTGTCATAAGCTCTTTCTTAAAGAA TTTTTTTTGTGAAATTCCTTGTACAGTTATCAATAATAATAATAATAATAATAATAATAATGGTAAAAGCCAACAATGATTGCTACTACTTACAATTTCGTTACACGTTACATGATCTGATGTCTGAAAAATCAAAGCGACCTATGAAAATATGAAGGGCAAGTTTGGGATTCATTTTTCTCAGCATACTTATAGGTGTTGCAAACATGCTGTTTGTTTTTATGCACACACCACAGTTTTTTTCTGTCCGTCTACGCTTACATATAATAATGATGATTATCTAGTCACACTATAAATAGCAATCAATAAAAAAGTACCCTGTGTTCCTCTGCTTATCAATCAGTGTAATCATTACTTCGAGTCGATTAGATGTGAT]
consensusID : consensus_9625#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence
[CCCCCCGNCCAGGGCTGTTATCCATTAAGGAGTTAANACAGTATGGTGTGGGGTATGACTAGGGNTTCNNCGAGGGGATGGGNNTAGTGGAANGNTCNNCTNTCCTNCCTCTTCTNCCACCTCCTCGNACTCNTTTCNTTACATTAGGCGATGTAGGGTTACAGAGTATTTTCTACGNTATTGTTTTGTNTCGNACATGTGTTGGTGAAAAATGAAGAAATGTTTCCCCTTATTGTCTTTATACTTCACACACACACATAGAGCCTTATGATGAATACCAGTAACCNAATATGTACAGTCGCATTCATTATTACTACTGCTATACTACCTATACAGCAATCTAGTTGGGAGTAAGCCACTGAATTTTTTTTTAACTCACATAAA]
[-] EMBL SMRAP146 [CCCCCCGNCCAGGGCTGTTATCCATTAAGGAGTTAANACAGTATGGTGTGGGGTATGACTAGGGNTTCNNCGAGGGGATGGGNNTAGTGGAANGNTCNNCTNTCCTNCCTCTTCTNCCACCTCCTCGNACTCNTTTCNTTACATTAGGCGATGTAGGGTTACAGAGTATTTTCTACGNTATTGTTTTGTNTCGNACATGTGTTGGTGAAAAATGAAGAAATGTTTCCCCTTATTGTCTTTATACTTCACACACACACATAGAGCCTTATGATGAATACCAGTAACCNAATATGTACAGTCGCATTCATTATTACTACTGCTATACTACCTATACAGCAATCTAGTTGGGAGTAAGCCACTGAATTTTTTTTTAACTCACATAAA]
consensusID : consensus_9625#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 124 fasta sequence
[TCATTAAGATTTATACATATGTGTGATTTGGACTAGTTTTCTACGAGGAATGTTTTAGTGTTATTTTCTTCTTTCTTCCTTNTGTTTCTAGCAAAACAAATATTTTTGCAAAAATAGTACAAGA]
[+] EMBL SMRAP176 [TCATTAAGATTTATACATATGTGTGATTTGGACTAGTTTTCTACGAGGAATGTTTTAGTGTTATTTTCTTCTTTCTTCCTTNTGTTTCTAGCAAAACAAATATTTTTGCAAAAATAGTACAAGA]
[+] EMBL SMRAP177 [TCATTAAGATTTATACATATGTGTGATTTGGACTAGTTTTCTACGAGGAATGTTTTAGTGTTATTTTCTTCTTTCTTCCTTNTGTTTCTAGCAAAACAAATATTTTTGCAAAAATAGTACAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9625#0 AGAACTAGGTGTTTTTTTATTTTTATCTATACATATACCTCCAAGTTTATTCATATGCAC 60
consensus_9625#3 ------------------------------------------------------------
consensus_9625#2 ------------------------------------------------------------
consensus_9625#1 ------------TGTAGTTTCCAGAGTATTTTCTACTTTATTGTTTTGTTTCGAACATGT 48
consensus_9625#0 TTCTCTCGCACTGTGTGTGTGCCACTGTGTGTTTATGCGAATCTTCTTTGACCGAGTTTT 120
consensus_9625#3 ------------------------------------------------------------
consensus_9625#2 ------------------------------------------------------------
consensus_9625#1 GTTGGTGAAAAATAAAGAAATGTTTCCCCTTATTGTCTTTATACTTCCCCCCCCCCCATA 108
consensus_9625#0 TTTCTTTACTTGTTTATTAATCTCTGGAATGTATTGAAGGTCAACTAACCACGCATGTCT 180
consensus_9625#3 ------------------------------------------------------------
consensus_9625#2 ------------------------------------------------------------
consensus_9625#1 GACCCTTATGATGAATCCCAGTACCAAAATATGTCCAGTCGCATTCATTATTACTACTGC 168
consensus_9625#0 TCAATTTCACACCTCACACTGCTACCTTGTATACACCACTCTTTTCTCGTAAAGTAGTGT 240
consensus_9625#3 ------------------------------------------------------------
consensus_9625#2 ------------------------------------------------------------
consensus_9625#1 TATACTCCCTATCCACCAATTTAGTTGGGAGTAACCCCCTGAATTTTTTTTCCAACTTTG 228
consensus_9625#0 GGATTAATCAATCATCATTGTTATCATTATTATTATTATACA-TATG-TGTGATTTATGA 298
consensus_9625#3 -----------------------TCATTAAGAT--TTATACA-TATG-TGTGATTTG-GA 32
consensus_9625#2 --CCCCCCGNCCAGGGCTGTTATCCATTAAGGAGTTAANACAGTATGGTGTGGGGTATGA 58
consensus_9625#1 GTGTTTTTTGATAGTCATTCTTTCCAAAAAACTCGATGTCGATCATG-TGTAACA---GT 284
** * * *** *** *
consensus_9625#0 CTAGT-TTTCTACG-AGGAAT--GTTTTAGTGTTATTTTCTTCTTTC-TTCCTCTTCTCC 353
consensus_9625#3 CTAGT-TTTCTACG-AGGAAT--GTTTTAGTGTTATTTTCTTCTTTC-TTCCTTNTGTT- 86
consensus_9625#2 CTAGGGNTTCNNCG-AGGGGATGGGNNTAGTGGAANGNTCNNCTNTCCTNCCTCTTCTNC 117
consensus_9625#1 GTTCTCTCTCTGTGTACGTGTGTATTTTACTCATAATTCTCATTGTTGTTTTTGTTGTTA 344
* ** * * * ** * * * * * * * *
consensus_9625#0 CACCTCCTCGTACTCTTTTCTTTACAT-TAACG------ATGTAGTTT-ACAGAGTATTT 405
consensus_9625#3 --TCTAGCAAAACAAATATTTTTGCAA-AAATA------GTACAAGA------------- 124
consensus_9625#2 CACCTCCTCGNACTCNTTTCNTTACATTAGGCG------ATGTAGGGTTACAGAGTATTT 171
consensus_9625#1 TTGCCTTTGTCATAAGCTCTTTCTTAAAGAATTTTTTTTGTGAAATTCCTTGTACAGTTA 404
* * * * * *
consensus_9625#0 TCTACTTTATTGTTTTGTTTCGAACATGTGTTGGTGAAAA--ATGAAGAAATGTTTCCCC 463
consensus_9625#3 ------------------------------------------------------------
consensus_9625#2 TCTACGNTATTGTTTTGTNTCGNACATGTGTTGGTGAAAA--ATGAAGAAATGTTTCCCC 229
consensus_9625#1 TCAATAATAATAATAATAATAATAATAATAATGGTAAAAGCCAACAATGATTGCTACTAC 464
consensus_9625#0 TTATTGTCTTTATACTTCACACACACACATAGAGCCTTATGATGAATACCAG-TAACAAA 522
consensus_9625#3 ------------------------------------------------------------
consensus_9625#2 TTATTGTCTTTATACTTCACACACACACATAGAGCCTTATGATGAATACCAG-TAACCNA 288
consensus_9625#1 TTACAATTTCGTTACACGTTACATGATCTGATGTCTGAAAAATCAAAGCGACCTATGAAA 524
consensus_9625#0 ATATGTACAGTCGCATTCATTATTACTACTGCTATACTACCTATACAGCAATCTAGTTGG 582
consensus_9625#3 ------------------------------------------------------------
consensus_9625#2 ATATGTACAGTCGCATTCATTATTACTACTGCTATACTACCTATACAGCAATCTAGTTGG 348
consensus_9625#1 ATATGAAGGGCAAGTTTGGGATTCATTTTTCTCAGCATACTTATAGGTGTTGCAAACATG 584
consensus_9625#0 GAGTAAGCCACTGAATTTTTTTACAACTTTGGTGTTTTTTGATAGTCATTCTTTACAAAA 642
consensus_9625#3 ------------------------------------------------------------
consensus_9625#2 GAGTAAGCCACTGAATTTTTTTTTAACTCACATAAA------------------------ 384
consensus_9625#1 CTGTTTGTTTTTATGCACACACCACAGTTTTTTTCTGTCCGTCTACGCTTACATATAATA 644
consensus_9625#0 AACTCGATGTCGATCATGTGTAACAGTGTTCTCTCTCTGTGTACGTGTGTATTTTACTCA 702
consensus_9625#3 ------------------------------------------------------------
consensus_9625#2 ------------------------------------------------------------
consensus_9625#1 ATGATGATTATCTAGTCACACTATAAATAGCAATCAATAAAAAAGTACCCTGTGTTCCTC 704
consensus_9625#0 TAATTCTCATTGNTGNTNTTGNTGNTATTGCCTTTGTCATAAGCTCTTTCTTAAAGAATT 762
consensus_9625#3 ------------------------------------------------------------
consensus_9625#2 ------------------------------------------------------------
consensus_9625#1 TGCTTATCAATCAGTGTAATCATTACTTCGAGTCGATTAGATGTGAT------------- 751
consensus_9625#0 TTTTTTGTGAAATTCCTTGTACAGTTATCANTANTANTANTANTANTANTANTANTANTG 822
consensus_9625#3 ------------------------------------------------------------
consensus_9625#2 ------------------------------------------------------------
consensus_9625#1 ------------------------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||