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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9626#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1185 fasta sequence
[AGAAAAACNTTTGTTGTTGTTTGTGCGGGATCGAAATGCAAATATTGCAATCCTTCATCATTTTNTGATGAAACCGAAATGCACTTAAATGGCTTATACTCTACTTGGTATTCATATTTTTACGTATAAGGTTTAGGATTACACAAAATATACTAGCAACATCTAGACCAAGTGAAAAAATAATTGAAGAATTTGATATAATTAAGCAGTTTAAAAGGTATAGTGAGTGATAGCACAGATTTTTGAAAGGATGAATATTTGCTCCATTTTTAACATGCAAACAGCAGGGGAACACAGTAGTTGTGGCTATGGTGTACTCAGTTCTGGATTTTCATATGACCCATTAAGCTTTATGAAAAACAATAGTAAGTGTATGATTAGCTGTGAAGATAAGATATACAGTTTCGTTTTACAATTTCAGCTGGTATGTATTAATTATTTAGATGAACATAAGGTAAAGGTGTGACTACGATGTCGCATCACTTCAGTTTATCTTGGATACAGTGACGGTAATCCAGTTCGCAATATTTAAAGGAAAAATCGCAGTTCACTGTCATGCAGGACTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCAGGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATATTTCGGATCACACGGACAGTTTAGTTTAGAAGCATTTCTCAAACGCCAGAACGTTTTATTGCATGGACCGGAAAGAAGAAGGCTAAGAAACATTCCAAAAATTATATACATGTGTTGCAAACTGCTTGTCAGAATCATTGTGACAGGATGCACATCAGTACAAATAGATTCTTCAAACCATAGAAATCGAATAGTGAGTGATGAAAACAACTGTCAATCAACAAAAAAACTTCCCACAACAAGTGTTACACAATCAGAAGTTTTTACTAGTTGTCAACCAGATGAAACAACTAAACTGACGAATGCAACTGTAGATTGTACATATGGAGAGAATTCCCANAATCANAATGTAGATAATAATCAGTCTATTGGCGCAAGCTCTGTTCTTGAAGCTCTGCTTACTACAGAATATCCTGAA]
[-] EMBL CD200430 [AGAAAAACNTTTGTTGTTGTTTGTGCGGGATCGAAATGCAAATATTGCAATCCTTCATCATTTTNTGATGAAACCGAAATGCACTTAAATGGCTTATACTCTACTTGGTATTCATATTTTTACGTATAAGGTTTAGGATTACACAAAATATACTAGCAACATCTAGACCAAGTGAAAAAATAATTGAAGAATTTGATATAATTAAGCAGTTTAAAAGGTATAGTGAGTGATAGCACAGATTTTTGAAAGGATGAATATTTGCTCCATTTTTAACATGCAAACAGCAGGGGAACACAGTAGTTGTGGCTATGGTGTACTCAGTTCTGGATTTTCATATGACCCATTAAGCTTTATGAAAAACAATAGTAAGT ]
[-] EMBL CD189111 [ GTAGTTGTGGCTATGGTGTACTCAGTTCTGGATTTTCATATGACCCATTAAGCTNTATGAAAAACAATAGTAAGTGTATGATTAGCTGTGAAGATAAGATATACAGTTTCGTTTTACAATTTCAGCTGGTATGTATTAATTATTTAGATGAACATAAGGTAAAGGTGTGACTACGATGTCGCATCACTTCAGTTTATCTTGGATACAGTGACGGTAATCCAGTTCGCAATATTTAAAGGAAAAATCGCAGTTCACTGTCATGCAGGACTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCAGGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACCATATGTTAGA ]
[+] EMBL CD158996 [ GGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATATTTCGGATCACACGGACAGTTTAGTTTAGAAGCATTTCTCAAACGCCAGAACGTTTTATTGCATGGACCGGAAAGAAGAAGGCTAAGAAACATTCCAAAAATTATATACATGTGTTGCAAACTGCTTGTCAGAATCATTGTGACAGGATGCACATCAGTACAAATAGATTCTTCAAACCATAGAAATCGAATAGTGAGTGATGAAAACAACTGTCAATCAACAAAAAAACTTCCCACAACAAGTGTTACACAATCAGAAGTTTTTACTAGTTGTCAACCAGATGAAACAACTAAACTGACGAATGCAACTGTAGATTGTACATATGGAGAGAATTCCCANAATCANAATGTAGATAATAATCAGTCTATTGGCGCAAGCTCTGTTCTTGAAGCTCTGCTTACTACAGAATATCCTGAA]
[+] EMBL CD137902 [ GGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATATTTCGGATCACACGGACAGTTTAG TTAGAAGCATTTCTCAAACGCCAGAACGTTTTATTGCATGGACCGGAAAGAAGAAGGCTAAGAAACATTCCAAAAATTATATACATGTGTTGCAAACTGCTTGTCAGAATCATTGTGACAGGATGCACATCAGTACAAATAGATTCTTCAAACCATAGAAATCGA ]
consensusID : consensus_9626#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 249 fasta sequence
[GTTTGTTTATGTGCATCTCCACATAGCTTTTCAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATACATAAATTTGAAAAGTATTTGTATCTTTACCGAATATATTTCGGATCACACGGACAGTTTAGTTTAGAGGCATTTCTCAAACGCCAGAACGTTTTATTGCATGGACCGGAAAGAAGAAGG]
[-] EMBL CD158983 [GTTTGTTTATGTGCATCTCCACATAGCTTTTCAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATACATAAATTTGAAAAGTATTTGTATCTTTACCGAATATATTTCGGATCACACGGACAGTTTAGTTTAGAGGCATTTCTCAAACGCCAGAACGTTTTATTGCATGGACCGGAAAGAAGAAGG]
consensusID : consensus_9626#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 238 fasta sequence
[ACTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCAGGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGGTTAGATGTAATAAACTATTTTATTTCGATAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATAT]
[+] EMBL CD199626 [ACTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCAGGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGGTTAGATGTAATAAACTATTTTATTTCGATAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATA ]
[+] EMBL CD199662 [ACTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCAGGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAGGAAGCGATACAATATGTTAGATTTCGAAGGTTAGATGTAATAAACTATTTTATTTCGATAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATA ]
[+] EMBL CD199688 [ACTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCAGGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGGTTAGATGTAATAAACTATTTTA TTCGATAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATA ]
[-] EMBL CD199699 [ CTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCAGGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGGTTAGATGTAATAAACTATTTTATTTCGATAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATAT]
[-] EMBL CD199782 [ CTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCAGGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAAGAAGCGATACAATATGTTAGATTTCGAAGGTTAGATGTAATAAACTATTTTATTTCGATAGACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATTTGTATCTTTACCGAATATAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9626#0 AGAAAAACNTTTGTTGTTGTTTGTGCGGGATCGAAATGCAAATATTGCAATCCTTCATCA 60
consensus_9626#1 ------------------------------------------------------------
consensus_9626#2 ------------------------------------------------------------
consensus_9626#0 TTTTNTGATGAAACCGAAATGCACTTAAATGGCTTATACTCTACTTGGTATTCATATTTT 120
consensus_9626#1 ------------------------------------------------------------
consensus_9626#2 ------------------------------------------------------------
consensus_9626#0 TACGTATAAGGTTTAGGATTACACAAAATATACTAGCAACATCTAGACCAAGTGAAAAAA 180
consensus_9626#1 ------------------------------------------------------------
consensus_9626#2 ------------------------------------------------------------
consensus_9626#0 TAATTGAAGAATTTGATATAATTAAGCAGTTTAAAAGGTATAGTGAGTGATAGCACAGAT 240
consensus_9626#1 ------------------------------------------------------------
consensus_9626#2 ------------------------------------------------------------
consensus_9626#0 TTTTGAAAGGATGAATATTTGCTCCATTTTTAACATGCAAACAGCAGGGGAACACAGTAG 300
consensus_9626#1 ------------------------------------------------------------
consensus_9626#2 ------------------------------------------------------------
consensus_9626#0 TTGTGGCTATGGTGTACTCAGTTCTGGATTTTCATATGACCCATTAAGCTTTATGAAAAA 360
consensus_9626#1 ------------------------------------------------------------
consensus_9626#2 ------------------------------------------------------------
consensus_9626#0 CAATAGTAAGTGTATGATTAGCTGTGAAGATAAGATATACAGTTTCGTTTTACAATTTCA 420
consensus_9626#1 ------------------------------------------------------------
consensus_9626#2 ------------------------------------------------------------
consensus_9626#0 GCTGGTATGTATTAATTATTTAGATGAACATAAGGTAAAGGTGTGACTACGATGTCGCAT 480
consensus_9626#1 ------------------------------------------------------------
consensus_9626#2 ------------------------------------------------------------
consensus_9626#0 CACTTCAGTTTATCTTGGATACAGTGACGGTAATCCAGTTCGCAATATTTAAAGGAAAAA 540
consensus_9626#1 ------------------------------------------------------------
consensus_9626#2 ------------------------------------------------------------
consensus_9626#0 TCGCAGTTCACTGTCATGCAGGACTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCA 600
consensus_9626#1 ---------------------------GTTTGTTTATGTGCATCTCCACATAGCTTTTCA 33
consensus_9626#2 ----------------------ACTTGGTTTGTTTATGTGCATCTCCACATAGCTTTTCA 38
*********************************
consensus_9626#0 GGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAA 660
consensus_9626#1 G---------------------------------TATTTAATAACCGCATCTCCGCTGAA 60
consensus_9626#2 GGTAGAACTGGTGTAATAATTGCCTGTTATCTAGTATTTAATAACCGCATCTCCGCTGAA 98
* **************************
consensus_9626#0 GAAGCGATACAATATGTTAGATTTCGAAG------------------------------- 689
consensus_9626#1 GAAGCGATACAATATGTTAGATTTCGAAG------------------------------- 89
consensus_9626#2 GAAGCGATACAATATGTTAGATTTCGAAGGTTAGATGTAATAAACTATTTTATTTCGATA 158
*****************************
consensus_9626#0 -ACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATT 748
consensus_9626#1 -ACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATACATAAATTTGAAAAGTATT 148
consensus_9626#2 GACCAGGATCTATACAAACCCAGAATCAAGTTGGATGCATATATAAATTTGAAAAGTATT 218
**************************************** ******************
consensus_9626#0 TGTATCTTTACCGAATATATTTCGGATCACACGGACAGTTTAGTTTAGAAGCATTTCTCA 808
consensus_9626#1 TGTATCTTTACCGAATATATTTCGGATCACACGGACAGTTTAGTTTAGAGGCATTTCTCA 208
consensus_9626#2 TGTATCTTTACCGAATATAT---------------------------------------- 238
********************
consensus_9626#0 AACGCCAGAACGTTTTATTGCATGGACCGGAAAGAAGAAGGCTAAGAAACATTCCAAAAA 868
consensus_9626#1 AACGCCAGAACGTTTTATTGCATGGACCGGAAAGAAGAAGG------------------- 249
consensus_9626#2 ------------------------------------------------------------
consensus_9626#0 TTATATACATGTGTTGCAAACTGCTTGTCAGAATCATTGTGACAGGATGCACATCAGTAC 928
consensus_9626#1 ------------------------------------------------------------
consensus_9626#2 ------------------------------------------------------------
consensus_9626#0 AAATAGATTCTTCAAACCATAGAAATCGAATAGTGAGTGATGAAAACAACTGTCAATCAA 988
consensus_9626#1 ------------------------------------------------------------
consensus_9626#2 ------------------------------------------------------------
consensus_9626#0 CAAAAAAACTTCCCACAACAAGTGTTACACAATCAGAAGTTTTTACTAGTTGTCAACCAG 1048
consensus_9626#1 ------------------------------------------------------------
consensus_9626#2 ------------------------------------------------------------
consensus_9626#0 ATGAAACAACTAAACTGACGAATGCAACTGTAGATTGTACATATGGAGAGAATTCCCANA 1108
consensus_9626#1 ------------------------------------------------------------
consensus_9626#2 ------------------------------------------------------------
consensus_9626#0 ATCANAATGTAGATAATAATCAGTCTATTGGCGCAAGCTCTGTTCTTGAAGCTCTGCTTA 1168
consensus_9626#1 ------------------------------------------------------------
consensus_9626#2 ------------------------------------------------------------
consensus_9626#0 CTACAGAATATCCTGAA 1185
consensus_9626#1 -----------------
consensus_9626#2 -----------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||