|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9630#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1163 fasta sequence
[TGCTTTGAATACCGGTCACATTGGAGAATATGGTCAGAAATCTATATCGTCTAATCGACATCAGATGTTGCGAAGCCGCCGGATAAAATATTCGATGAATGAAATATTATTAGATCTCTTACCAAAATGAGGGTGATTCGCGGTAGTTTTTCAAATGTGGCCACATTAAATCTAGTTCGTTTCGTATTCCCTGCAAACGTCGAATATCAAAACGTAACGAACCAGTACAATTTGGTTGTCTATTGGGGAAAATGGTAGGCCTGAAAATATTGATATACATAATGCATTACACTTTATCAAACAATAACATCCATTCACTGACATGTACGTTTCGGAAACGTGATCACCCAAACTTATCACTAAACAGCTATAATGCCTGTGTTGAACGTGTGAAGCATTTGAAGTAATTAATTACCTCATAGTATTGGAAAGGCGTACATAAAGGTTCTCATTAAAATCTTATCAACGACACCAAACTGTTACACGGAATGCAGTATCCTTGTTGCGGTGGTCAGATATATTACTGTGAATCTAGGAACAGTGAGACTCAGACCATATAGTATTGTGATGCAAATCAATGGACTCCACAACCTGGATCGCGTTAGTCGTATGGGCGCGCAGAAAATCAATAGTTAGTGGTCAGCATTCACTTCATAATTCAACACGAATTCGTCAACAAGAAATTCCAACATTATTTCGTGGTTTGTAATAGTGTTGGAAAATCTGTGGTCCAAAATCTATATATCAGTGGTTTCAGTTCACATCCGGCATGATGATTGTGTGCAGCTCCAGGAATTCGGCGACTCTGTTCCATTTTCGGTTGTTAGTTCTAACACATACCAGTGCATTCTAGATAATACAGAGTCTATGTGTAATACACTGTTGGACAGACGGAAGATGATCTTAAGTAGACGTACAATCGATTACAGACACCTAAACTCGAATCCAAGCTGTGACGGATGTGGTGTTTATAAGAACCAATGATTCTTCAGTATTGATGGCTGTTTTTAACTCGAATGGCA-AATACAGTACAATCGTTCCTGCTCATCTAATACTTCTTGATGAAATTGCGTTATTGCTGGTATTGATAGTTTATACTTCAATCAAATACTTC-AATTATCATAATCCGCACGTATATCTTCATAAATCAAAGTAATCTTACC]
[+] EMBL CD115660 [TGCTTTGAATACCGGTCACATTGGAGAATATGGTCAGAAATCTATATCGTCTAATCGACATCAGATGTTGCGAAGCCGCCGGATAAAATATTCGATGAATGAAATATTATTAGATCTCTTACCAAAATGAGGGTGATTCGCGGTAGTTTTTCAAATGTGGCCACATTAAATCTAGTTCGTTTCGTATTCCCTGCAAACGTCGAATATCAAAACGTAACGAACCAGTACAATTTGGTTGTCTATTGGGGAAAATGGTAGGCCTGAAAATATTGATATACATAATGCATTACACTTTATCAAACAATAACATCCATTCACTGACATGTACGTTTCGG ]
[-] EMBL CD115878 [ GCTTTGAATACCGGTCACATTGGAGAATATGGTCAGAAATCTATATCGTCTAATCGACATCAGATGTTGCGAAGCCGCCGGATAAAATATTCGATGAATGAAATATTATTAGATCTCTTACCAAAATGAGGGTGATTCGCGGTAGTTTTTCAAATGTGGCCACATTAAATCTAGTTCGTTTCGTATTCCCTGCAAACGTCGAATATCAAAACGTAACGAACCAGTACAATTTGGTTGTCTATTGGGGAAAATGGTAGGCCTGAAAATAATGATATACATAATGCATTACACTTTATCAAACAATAACATCCATTCACTGACATGTACGTTTCGGAAACGTGATCACCCAAACTTATCACTAAACAGCTATAATGCCTGTGTTGAACGTGTGAAGCATTTGAAGTAATTAATTACCTCATAGTATTGGAAAGGCGTACATAAAGGTTCTCATTAAAATCTTATCAACGACACCA ]
[-] EMBL CD118966 [ CAGCTATAATGCCTGTGTTGAACGTGTGAAGCATTTGAAGTAATTAATTACCTCATAGTATTGGAAAGGCGTACATAAAGGTTCTCATTAAAATCTTATCAACGATACCAAACTGTTACACGGAATGCAGTATCCTTGTTGCGGTGGTCAGATATATTACTGTGAATCTAGGAACAGTGAGACTCAGACCATATAGTATTGTGATGCAAATCAATGGACTCCACAACCTGGATCGCGTTAGTCGTATGGGCGCGCAGAAAATCAATAGTTAGTGGTCAGCATTCACTTCATAATTCAACACGAATTCGTCAACAAGAAATTCCAACATTATTTCGTGGTTTGTAATAGTGTTGGAAAATCTGTGGTCCAAAATCTATATATCAGTGGTTTCAGTTCACATCCGGCATGATGATTGTGTGCAGCTCCAGGAATTCGGCGACTCTGTTCCATTTTCGGTTGTTAGTTCTAACA ]
[-] EMBL CD119035 [ GTTGAACGTGTGAAGCATTTGAAGTAATTAATTACCTCATAGTATTGGAAAGGCGTACATAAAGGTTCTCATTAAAATCTTATCAACGACACTAAACTGTTACACGGAATGCAGTATCCTTGTTGCGGTGGTCAGATATATTACTGTGAATCTAGGAACAGTGAGACTCAGACCATATAGTATTGTGATGCAAATCAATGGACTCCACAACCTGGATCGCGTTAGTCGTATGGGCGCGCAGAAAATCAATAGTTAGTGGTCAGCATTCACTTCATAATTCAACACGAATTCGTCAACAAGAAATTCCAACATTATTTCGTGGTTTGTAATAGTGTTGGAAAATCTGTGGTCCAAAATCTATATATCAGTGGTTTCAGTTCACATCCGGCATGATGATTGTGTGCAGCTCCAGGAATTCGGCGACTCTGTTCCATTTTCGGTTGTTAGTTCTAACA ]
[-] EMBL CD119247 [ gACTGTTACACGGAATGCAGTATCCTTGTTNCGGTGGTCAGATATATTACTGTGAATCTAGGAACAGTGAGACTCAGACCATATAGTATTGTGATGCAAATCAATGGACTCCACAACCTGGATCGCGTTAGTCGTATGGGCGCGCAGAAAATCAATAGTTAGTGGTCAGCATTCACTTCATAATTCAACACGAATTCGTCAACAAGAAATTCCAACATTATTTCGTGGTTTGTAATAGTGTTGGAAAATCTGTGGTCCAAAATCTATATATCAGTGGTTTCAGTTCACATCCGGCATGATGATTGTGTGCAGCTCCAGGAATTCGGCGACTCTGTTCCATTTTCGGTTGTTAGTTCTAACAC ]
[-] EMBL CD119282 [ ACGGAATGCAGTATCC TGTTTCGGTGGTCAGATATATTACTGTGAATCTAGGAACAGTGAGACTCAGACCATATAGTATTGTGATGCAAATCAATGGACTCCACAACCTGGATCGCGTTAGTCGTATGGGCGCGCAGAAAATCAATAGTTAGTGGTCAGCATTCACTTCATAATTCAACACGAATTCGTCAACAAGAAATTCCAACATTATTTCGTGGTTTGTAATAGTGTTGGAAAATCTGTGGTCCAAAATCTATATATCAGTGGTTTCAGTTCACATCCGGCATGATGATTGTGTGCAGCTCCAGGAATTCGGCGACTCTGTTCCATTTTCGGTTGTTAGTTCTAACAC ]
[+] EMBL CD121174 [ CTGTGAATCTAGGAACAGTGAGACTCAGACCATATAGTATTGTGATGCAAATCAATGGACTCCACAACCTGGATCGCGTTAGTCGTATGGGCGCGCAGAAAATCAATAGTTAGTGGTCAGCATTCACTTCATAATTCAACACGAATTCGTCAACAAGAAATTCCAACATTATTTCGTGGTTTGTAATAGTGTTGGAAAATCTGTGGTCCAAAATCTATATATCAGTGGTTTCAGTTCACATCCGGCATGATGATTGTGTGCAGCTCCAGGAATTCGGCGACTCTGTTCCATTTTCGGTTGTTAGTTCTAATACATACCAGTGCATTCTAGATAATACAGAGTCTATGTGTAATACACTGTTGGACAGACGGAAGATGATCTTAAGTAGACGTACAATCGATTACAGACACCTAAACTCGAATCCAAGCTGTGACGGATGTGGTGTTTATAAGAACCAATGATTCTTCAGTATTGATGGCTGTTTTTAACTCGAATGGCA AATACAGTACAATCGTTCCTGCTCATCTAATACTTCTTGATGAAATTGCGNTATTGCTGGTATTGATAGTTTATACTTCAATC AATACTTC AATTATCATAATCCGCACGTATATCTTCATAAATCAAAGTAATCTTACC]
[+] EMBL CD121208 [ CTGTGAATCTAGGAACAGTGAGACTCAGACCATATAGTATTGTGATGCAAATCAATGGACTCCACAACCTGGATCGCGTTAGTCGTATGGGCGCGCAGAAAATCAATAGTTAGTGGTCAGCATTCACTTCATAATTCAACACGAATTCGTCAACAAGAAATTCCAACATTATTTCGTGGTTTGTAATAGTGTTGGAAAATCTGTGGTCCAAAATCTATATATCAGTGGTTTCAGTTCACATCCGGCATGATGATTGTGTGCAGCTCCAGGAATTCGGCGACTCTGTTCCATTTTCGGTTGTTAGTTCTAATACATACCAGTGCATTCTAGATAATACAGAGTCTATGTGTAATACACTGTTGGACAGACGGAAGATGATCTTAAGTAGACGTACAATCGATTACAGACACCTAAACTCGAATCCAAGCTGTGACGGATGTGGTGTTTATAAGAACCAATGATTCTTCAGTATTGATGGCTGNTTTTAACTCGAAT GCANAATACAGTACAATCGTTCCTGCTCATCTAATACTTCTTGATGAAATTGCGTTATTGCTGGTATTGATAGTTTATACTTCAATCAAATACTTCAAATTAT ]
[+] EMBL CD124975 [ CGTATGGGCGCGCAGAAAATCAATAGTTAATGGTCAGCATTCACTTCATAATTCAACACGAATTCGTCAACAAGAAATTCCAACATTATTTCGTGGTTTGTAATAGTGTTGGAAAATCTGTGGTCCAAAATCTATATATCAGTGGTTTCAGTTCACATCCGGCATGATGATTGTGTGCAGCTCCAGGAATTCGGCGACTCTGTTCCATTTTCGGTTGTTAGTTCTAACACATACCAGTGCATTCTAGATAATACAGAGTCTATGTGTAATACACTGTTGGACAGACGGAAGATGATCTTAAGTAGACGTACAATCGATTACAGACACCTAAACTCGAATCCAAGCTGTGACGGATGTGGTGTTTATAAGAACCAATGATTCTTCAGTATTGATGGCTGTTTTTAACTCGAATGCAA AATACAGTACAATCGTTCCTGCTCATCTAATACTTCTTGATGAAATTGCGTTATTGCTGGTATTGATAGTTTATACTTCAATCGAATACTTC AAa ]
consensusID : consensus_9630#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 561 fasta sequence
[CGTTACAGCCCCTAACCTCGATCCAAGCTATGGGGGATGGGGTGTTATATGAACCCAATGACTCCTTTGCATTGAATAATTTTTTCATCTCGAATTCAAAATTCAGTACAATCGTTCCTGCTCATCTAATACTTCTTGGATGAAATTGCGTTATGGCTGGGATAGATAGTTTATACTTCAATCAAATACTTCAAATTATCATACTCACGCACGTATATTTTTCATAAATCAAAAGTAATCTTACCACAATCCATGAATGGTGAAATCTCTCAAATCTCTCGGTAGCCTACACTGAAAGAGAGAATTTCAAATAATTGTTACTCAGTTGAACAGAGATGTATATGAACATAATATGTGCTGAGACTTATCAAATGCGATTCCAGTGACTAGATAAATTTTAGAAGTGAAATAGGTAGTTTCAGTTAGTTGCCTTCACAAACTGACCCTTGATATGAACTTCACATTGCTTCACATTACCAACATAATAGACCTGAACACGGACAATATGATTGCACATCTACTAAATTGATTGAAATGGTTTACAATTTCAAGCAATCTGTG]
[-] EMBL AI390090 [CGTTACAGCCCCTAACCTCGATCCAAGCTATGGGGGATGGGGTGTTATATGAACCCAATGACTCCTTTGCATTGAATAATTTTTTCATCTCGAATTCAAAATTCAGTACAATCGTTCCTGCTCATCTAATACTTCTTGGATGAAATTGCGTTATGGCTGGGATAGATAGTTTATACTTCAATCAAATACTTCAAATTATCATACTCACGCACGTATATTTTTCATAAATCAAAAGTAATCTTACCACAATCCATGAATGGTGAAATCTCTCAAATCTCTCGGTAGCCTACACTGAAAGAGAGAATTTCAAATAATTGTTACTCAGTTGAACAGAGATGTATATGAACATAATATGTGCTGAGACTTATCAAATGCGATTCCAGTGACTAGATAAATTTTAGAAGTGAAATAGGTAGTTTCAGTTAGTTGCCTTCACAAACTGACCCTTGATATGAACTTCACATTGCTTCACATTACCAACATAATAGACCTGAACACGGACAATATGATTGCACATCTACTAAATTGATTGAAATGGTTTACAATTTCAAGCAATCTGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9630#0 TGCTTTGAATACCGGTCACATTGGAGAATATGGTCAGAAATCTATATCGTCTAATCGACA 60
consensus_9630#1 ------------------------------------------------------------
consensus_9630#0 TCAGATGTTGCGAAGCCGCCGGATAAAATATTCGATGAATGAAATATTATTAGATCTCTT 120
consensus_9630#1 --------------------------------------------CGTTAC--AGCCCCTA 14
*** * **
consensus_9630#0 ACCAAAATGAGGGTGATTCGCGGTAGTTTTTCAAATGTGGCCACATTAAATCTAGTTCGT 180
consensus_9630#1 ACCTCGATCCAAGCTATGGGGGATGGGGTGTT--ATATGAACCCAATGACTCCTTTGCAT 72
*** ** * ** * * * * * * ** ** * ** * * ** * * *
consensus_9630#0 TTCGTATTCCCTGCAAACGTCGAATATCAAAACGTAACG-AACCAGTACAATTTGGTTG- 238
consensus_9630#1 TGAATAATTTTTTC--ATCTCGAAT-TCAAAATTCAGTACAATCGTTCCTGCTCATCTAA 129
* ** * * * * ****** ****** * ** * * * * *
consensus_9630#0 --TCTATTGGGGAAAATGGTAGGCCTGAAAATATTGATA-TACATAATGCATTACACTTT 295
consensus_9630#1 TACTTCTTGGATGAAATTGCGTTATGGCTGGGATAGATAGTTTATACTTCAATCAAATAC 189
* **** **** * * ** **** * *** * ** * * *
consensus_9630#0 ATCAAACAATAACATCCATTCACTGACATGTACGTTTCGGAAACGTGATCACCCAAACTT 355
consensus_9630#1 TTCAAATTATCATACTCACGCA----CGTATATTTTTCATAAATCAAAAG---TAATCTT 242
***** ** * * ** ** * * ** **** *** * ** ***
consensus_9630#0 ATCACTAAACAGCTATAATGCCTGTGTTGAACGTGTGAAGCATTTGAAGTAATTAATTAC 415
consensus_9630#1 ACCACAATCCA----------------TGAATG-GTGAAATCTCTCAAATCTCTCGGTAG 285
* *** * ** **** * ***** * * ** * * **
consensus_9630#0 CTCATAGTATTGGAAAGGCGTACATAAAGGTTCTCATTAAAATCTTA-TCAACGACACCA 474
consensus_9630#1 CCTACACT----GAAAG--------AGAGAATTTCAAATAATTGTTACTCAGTTGAACAG 333
* * * * ***** * ** * *** ** * *** *** **
consensus_9630#0 AACTGTTACACGGAATGCAGTATCCTTGTTGCGGTGGTCAGATATATTAC-TGTGAATCT 533
consensus_9630#1 AGATGT-ATATG-AACATAATAT----------GTGCTGAGACTTATCAAATGCGATTCC 381
* *** * * * ** * *** *** * *** *** * ** ** **
consensus_9630#0 AGGAAC-AGTGAGACTCAGACCATATAGTATTGTGATGCAAATCAATGGACTCCACAACC 592
consensus_9630#1 AGTGACTAGATAAATTTTAGAAGTGAAATAG-GTAGTTTCAGTTAGTTGCCTTCACAAAC 440
** ** ** * * * * * ** ** * * * * * * ** ***** *
consensus_9630#0 TGGATCGCGTTAGTCGTATGGGCGCGCAGAAAATCAATAGTTAGTGGTCAGCATTCACTT 652
consensus_9630#1 TGACCCTTGATAT---------------GAACTTCA-----CATTGCTTCACATTACCAA 480
** * * ** *** *** * ** * **** *
consensus_9630#0 CATAATTCAACACGAATTCGTCAACAAGAAATTCCAACAT-TATTTCGTGGTTTGTAATA 711
consensus_9630#1 CATAATA-GACCTGAACACG--GACAATATGATTGCACATCTACTAAATTGATTGAAATG 537
****** ** *** ** **** * * **** ** * * * *** ***
consensus_9630#0 GTGTTGGAAAATCTGTGGTCCAAAATCTATATATCAGTGGTTTCAGTTCACATCCGGCAT 771
consensus_9630#1 GTTT---ACAATTTCAAGC----AATCTGTG----------------------------- 561
** * * *** * * ***** *
consensus_9630#0 GATGATTGTGTGCAGCTCCAGGAATTCGGCGACTCTGTTCCATTTTCGGTTGTTAGTTCT 831
consensus_9630#1 ------------------------------------------------------------
consensus_9630#0 AACACATACCAGTGCATTCTAGATAATACAGAGTCTATGTGTAATACACTGTTGGACAGA 891
consensus_9630#1 ------------------------------------------------------------
consensus_9630#0 CGGAAGATGATCTTAAGTAGACGTACAATCGATTACAGACACCTAAACTCGAATCCAAGC 951
consensus_9630#1 ------------------------------------------------------------
consensus_9630#0 TGTGACGGATGTGGTGTTTATAAGAACCAATGATTCTTCAGTATTGATGGCTGTTTTTAA 1011
consensus_9630#1 ------------------------------------------------------------
consensus_9630#0 CTCGAATGGCAAATACAGTACAATCGTTCCTGCTCATCTAATACTTCTTGATGAAATTGC 1071
consensus_9630#1 ------------------------------------------------------------
consensus_9630#0 GTTATTGCTGGTATTGATAGTTTATACTTCAATCAAATACTTCAATTATCATAATCCGCA 1131
consensus_9630#1 ------------------------------------------------------------
consensus_9630#0 CGTATATCTTCATAAATCAAAGTAATCTTACC 1163
consensus_9630#1 --------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||