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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9631#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1291 fasta sequence
[TACCCATGTAGTACAATTTTCTCCAGAAGATTGTACTACATGGATGAGGTATGCTGAATTAGAAAGTCTTCTGGGAGAGACAGATCGTGCACGAGGTATTTATGAATTAGCGATCAACAGGAAATTGCTGGATATGCCGGAATTATTATGGAAGGCATATATTGACTTCGAGATTGAACAGTATGATTGGGAACGTGCTCGGTCACTTTATCGAAGACTGCTAAATCGAACACAACATGTCAAAGTATGGTTAAGTCTTGCAAAC-TTCGAGCT-GTGTGCGTTGAACAAACTCACAGCCGCTGATTTAGATGATGAAGATTTANAACATTTAAAAGATGTTGAACTGGACAAAGAGACATTAATACAAGAACATAATGAAAATGAAGTCAATAAAGCTGTAGAACGTTCACGTAAAATCTACCAAGAAGCAAATAAAGCTCTGAAATATGCAGAGGATAAGGAACAACGTGTTCGATTACTTGAAGCTTGGAAGGAATTTGAATATGAATATGGAACTGAAAAAACACAACGAGATGTTGATAAACTACAACCGCAGAAGGTCATCCGCAGTCGCCGACTTGGTGATGAACGTAGTGGTTGGGAAGAGTATATTGAGTATACATTCCCCGATACAGATGCAGAAAAGCCAAACCAAAAATTGCTGACAATGGCTGCTAGATGGGCAGAGCAAATGGAGAGGAAAAAAGCAGCTGCAGAGGCTGAGGGTAAAGAGGATAGCGATTCCAGCGAAGAATCTGAAGAAGAAGAAGAAGAGGAAGATGATTTACAAGGTGATGAAGATGATAATCGTATTCCTGAGAGAGAGCCTACATGGTTTGATCGAAAAAACAAAGAAGAAATTGAAATCGACGAAGACAGTGATTAAAAGAAAGCCTAATTTTATATTTTTGTATATTTTTAAAATATTGTACAGTCAAATACACATTTATTAAATCCAGTAGAAAAAAAAAAAAAAAAATTAATTGTAGTAGAGATATTCACTGGTTTATGACTCCTCATCTGGCGGTAACCAATCGACAGTAACTGAGCACTGTGATCCATTAAAAAAGTACCAGTTTCCATGCGGTGCACCTTTTCGTGTTATGGCCCTGATTATTTCCTGGGACACAACACCACCAAGTACTGGATTAACAGCTGGGATTGTAGGACCACAACAACATTCTAAATCTTCAATGGAAAGAATTGTTTCATCTACATCCAGAAACTTTGATACATTTTGCCATTGGGATTGTAAATATGGTAGTGTAAATGGTGCTTCGTCGATAGAGCA]
[+] EMBL CD150024 [TACCCATGTAGTACAATTTTCTCCAGAAGATTGTACTACATGGATGAGGTATGCTGAATTAGAAAGTCTTCTGGGAGAGACAGATCGTGCACGAGGTATTTATGAATTAGCGATCAACAGGAAATTGCTGGATATGCCGGAATTATTATGGAAGGCATATATTGACTTCGAGATTGAACAGTATGATTGGGAACGTGCTCGGTCACTTTATCGAAGACTGCTAAATCGAACACAACATGTCAAAGTATGGTTAAGTCTTGCAAAC TTCGAGCT GTGTGCGTTGAACAAACTCACAGCCGCTGATTTANATGATGAAGATTTANAACATTTAAAAGATGTTGAACTGGACA ]
[+] EMBL CD150025 [TACCCATGTAGTACAATTTTCTCCAGAAGATTGTACTACATGGATGAGGTATGCTGAATTANAAAGTCTTCTGGGAGAGACAGATCGTGCACGAGGTATTTATGAATTAGCGATCAACAGGAAATTGCTGGATATGCCGGAATTATTATGGAAGGCATATATTGACTTCGAGATTGAACAGTATGATTGGGAACGTGCTCGGTCACTTTATCGAAGACTGCTAAATCGAACACAACATGTCAAAGTATGGTTAAGTCTTGCAAAC TTCGAGCT GTGTGCGTTGAACAAACTCACAGCCGCTGATTTAGATGATGAAGATTTANAACATTTAAAAGATGTTGAACTGGACAAAGAGACATTAATACAAGAACATAATGAAAATGAAGT ]
[-] EMBL CD149995 [ CAAACTTTCGAGCTGGTGTGCGTTGAACAAACTCACAGCCGCTGATTTAGATGATGAAGATTTAGAACATTTAAAAGATGTTGAACTGGACAAAGAGACATTAATACAAGAACATAATGAAAATGAAGTCAATAAAGCTGTAGAACGTTCACGTAAAATCTACCAAGAAGCAAATAAAGCTCTGAAATATGCAGAGGATAAGGAACAACGTGTTCGATTACTTGAAGCTTGGAAGGAATTTGAATATGAATATGGAACTGAAAAAACACAACGAGATGTTGATAAACTACAACCGCAGAAGGTCATCCGCAGTCGCCGACTTGGTGATGAACGTAGTGGTTGGGAAGAGTATATTGAGTATACATTCCCCGATACAGATGCAGAAAAGCCAAACCAAAAATTGCTGACA ]
[-] EMBL CD150018 [ cCGAGCTGGTGTGCGTTGAACAAACTCACAGCCGCTGATTTAGATGATGAAGATTTAGAACATTTAAAAGATGTTGAACTGGACAAAGAGACATTAATACAAGAACATAATGAAAATGAAGTCAATAAAGCTGTAGAACGTTCACGTAAAATCTACCAAGAAGCAAATAAAGCTCTGAAATATGCAGAGGATAAGGAACAACGTGTTCGATTACTTGAAGCTTGGAAGGAATTTGAATATGAATATGGAACTGAAAAAACACAACGAGATGTTGATAAACTACAACCGCAGAAGGTCATCCGCAGTCGCCGACTTGGTGATGAACGTAGTGGTTGGGAAGAGTATATTGAGTATACATTCCCCGATACAGATGCAGAAAAGCCAAACCAAAAATTGCTGACA ]
[+] EMBL CD162555 [ AAGCAAATAAAGCTCTGAAATATGCAGAGGATAAGGAACAACGTGTTCGATTACTTGAAGCTTGGAAGGAATTTGAATATGAATATGGAACTGAAAAAACACAACGAGATGTTGATAAACTACAACCGCAGAAGGTCATCCGCAGTCGCCGACTTGGTGATGAACGTAGTGGTTGGGAAGAGTATATTGAGTATACATTCCCCGATACAGATGCAGGAAAGCCAAACCAAAAATTGCTGACAATGGCTGCTAGATGGGCAGAGCAAATGGAGAGGAA ]
[-] EMBL AI395257 [ aaaccCAGTCGCCGACTTGGTGATGAACGTAGTGGTTGGGAAGAGTATATTGAGTATACATTCCCCGATACAGATGCAGAAAAGCC AACCCAAAATTGCTGACAATGGCTGCTAGATGGGCAGAGCAAATGGAGAGGAAAAAAGCAGCTGCAGAGGCTGAGGGTAAAGAGGATAGCGATTCCAGCGAAGAATCTGAAGAAGAAGAAGAAGAGGAAGATGATTTACAAGGTGATGAAGATGATAATCGTATTCCTGAGAGAGAGCCTACATGGTTTGATCGAAAAAACAAAGAAGAAATTGAAATCGACGAAGACAGTGATTAAAAGAAAGCCTAATTTTATATTTTTGTATATTTTTAAAATATTGTACAGTCAAATACACATTTATTAAATCCAGTAGAAAAAAAAAAAAAAAAA ]
[+] EMBL AI976378 [ TTTTTGTATATTTTTAAAATATTGTACAGTCAAATACACATTTATTAAATCCAGTAGAAAAATAACTATTTTTCTTAATTGTAGTAGAGATATTCACTGGTTTATGACTCCTCATCTGGCGGTAACCAATCGACAGTAACTGAGCACTGTGATCCATTAAAAAAGTACCAGTTTCCATGCGGTGCACCTTTTCGTGTTATGGCCCTGATTATTTCCTGGGACACAACACCACCAAGTACTGGATTAACAGCTGGGATTGTAGGACCACAACAACATTCTAAATCTTCAATGGAAAGAATTGTTTCATCTACATCCAGAAACTTTGATACATTTTGCCATTGGGATTGTAAATATGGTAGTGTAAATGGTGCTTCGTCGATAGAGCA]
consensusID : consensus_9631#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 457 fasta sequence
[CACGTCAGGTGTACAGATTTTGCTTAAAGTTAATACCACACAGACGTTTCACATTTGCTAAAATTTGGCTATATGCAGCAAAGTTCGAAATCCGTCAAAAGAAATTAACAGATGCGAGGAAACTACTGGGTACTGCTCTGGGTATGTGTCCAAAAGACAAGCTATTCCGCGGTTATATTGAATTGGAGATCCAGTTGAGAGAATTCGATAGATGTCGTAAATTATATGAAAAATTCCTGGAATTTTCTCCAGAAAATTGTACTACATGGATGAGGTATGCTGAATTAGAAAGTCTTCTGGGAGAGACAGATCGTGCACGAGGTATTTATGAATTAGCGATCAACAGGAAATTGCTGGATATGCCGGAATTATTATGGAAGGCATATATTGACTTCGAGATTGAACAGTATGATTGGGAACGTGCTCGGTCACTTTATCGAAGACTGCTAAATCGAAC]
[-] EMBL CD192743 [CACGTCAGGTGTACAGATTTTGCTTAAAGTTAATACCACACAGACGTTTCACATTTGCTAAAATTTGGCTATATGCAGCAAAGTTCGAAATCCGTCAAAAGAAATTAACAGATGCGAGGAAACTACTGGGTACTGCTCTGGGTATGTGTCCAAAAGACAAGCTATTCCGCGGTTATATTGAATTGGAGATCCAGTTGAGAG ]
[+] EMBL CD065681 [ GTCAGGTGT CA TTTGCTTAAAGTTAATACCACACAGACGTTTCACATTTGCTAAAATTTGGCTATATGCAGCAAAGTTCGAAATCCGTCAAAAGAAATTAACAGATGCGAGGAGACTACTGGGTACTGCTCTGGGTATGTGTCCAAAAGACAAGCTATTCCGCGGTTATATTGAATTGGAGATCCAGTTGAGAGAATTCGATAGATGTCGTAAATTATATGAAAAATTCCTGGAATTTTCTCCAGAAAATTGTACTACATGGATGAGGTATGCTGAATTAGAAAGTCTTCTGGGAGAGACAGATCGTGCACGAGGTATTTATGAATTAGCGATCAACAGGAAATTGCTGGATATGCCGGAATTATTATGGAAGGCATATATTGACTTCGAGATTGAACAGTATGATTGGGAACGTGCTCGGTCACTTTATCGAAGACTGCTAAATCGAAC]
[-] EMBL CD192132 [ TTTCACATTTGCTAAAATTTGGCTATATGCAGCAAAGTTCGAAATCCGTCAAAAGAAATTAACAGATGCGAGGAAACTACTGGGTACTGCTCTGGGTATGTGTCCAAAAGACAAGCTATTCCGCGGTTATATTGAATTGGAGATCCAGTTGAGAG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9631#0 TACCCATGTAGTACAATTTTCTCCAGAAGATTGTACTACATGGATGAGGTATGCTGAATT 60
consensus_9631#1 CACGTCAGGTGTACAGATTTTGCTTAAAGTTAATACCACACAGACGTTTCACATTTGCT- 59
** * ***** *** * *** * *** *** ** * * * *
consensus_9631#0 AGAAAGTCTTCTGGGAGAGACAGATCGTGCACGAGGTATTTATGAATTAGCGATCAACAG 120
consensus_9631#1 --AAAATTT-------------GGCTATATGCAGCAAAGTTCGAAAT---CCGTCAA-AA 100
*** * * * * * * ** *** * **** *
consensus_9631#0 GAAATTGCTGGATATGCCGGAATTATTATGGAAGGCATATATTGACTTCGAGATTGAACA 180
consensus_9631#1 GAAATTAACAGATGCGAGGAAACTACTGGG---------TACTG-CTCTGGGTATGT--- 147
****** *** * * ** ** * * ** ** ** * * **
consensus_9631#0 GTATGATTGGGAACGTGCTCGGTCACTTTATCGAAGACTGCTAAATCGAACACAACATGT 240
consensus_9631#1 GTCCAAAAGACAAGCTATTCCGCGGTTATATTGAA---TTGGAGATCCAGT------TGA 198
** * * ** * ** * * *** *** * * *** * **
consensus_9631#0 CAAAGTATGGTTAAGTCTTGCAAACTTCGAGCTGTGTGCGTTGAACAAACTCACAGCCGC 300
consensus_9631#1 GAGAATTCGAT-AGATGTCGTAAATTATATGAAAAATTCCTGGAATTTTCTCCAGAAAAT 257
* * * * * * * * * *** * * * * * *** ***
consensus_9631#0 TGATTTAGATGATGAAGATTTANAACATTTAAAAGATGTTGAACTGGACAAAGAGACATT 360
consensus_9631#1 TGTACTACATGGATGAGGTATGCTGAATTAGAAAGTCTTCTG---GGAGAGACAGATCGT 314
** ** *** ** * * *** **** * *** * * *** *
consensus_9631#0 AATACAAGAACATAATGAAAATGAAGTCAATAAAGCTGTAGAACGTTCACGTAAAATCTA 420
consensus_9631#1 G-CACGAGGTATTTATGAATTAGCGATCAACAGGAAATTGCTGGATATGCCGGAATTATT 373
** ** * ***** * **** * * * * ** * *
consensus_9631#0 CCAAGAAGCAAATAAAGCTCTGAAATATGCAGAGGATAAGGAACAACGTGTTCGATTACT 480
consensus_9631#1 ATGGAAGGCATATATTGACTTCGAGATTGAACAGTATGATTGGGAACGTGCTCGGTCACT 433
* *** *** * * * ** * ** ** * ****** *** * ***
consensus_9631#0 TGAAGCTTGGAAGGAATTTGAATATGAATATGGAACTGAAAAAACACAACGAGATGTTGA 540
consensus_9631#1 TTA----TCGAAGACTGCTAAAT-CGAAC------------------------------- 457
* * * **** * *** ***
consensus_9631#0 TAAACTACAACCGCAGAAGGTCATCCGCAGTCGCCGACTTGGTGATGAACGTAGTGGTTG 600
consensus_9631#1 ------------------------------------------------------------
consensus_9631#0 GGAAGAGTATATTGAGTATACATTCCCCGATACAGATGCAGAAAAGCCAAACCAAAAATT 660
consensus_9631#1 ------------------------------------------------------------
consensus_9631#0 GCTGACAATGGCTGCTAGATGGGCAGAGCAAATGGAGAGGAAAAAAGCAGCTGCAGAGGC 720
consensus_9631#1 ------------------------------------------------------------
consensus_9631#0 TGAGGGTAAAGAGGATAGCGATTCCAGCGAAGAATCTGAAGAAGAAGAAGAAGAGGAAGA 780
consensus_9631#1 ------------------------------------------------------------
consensus_9631#0 TGATTTACAAGGTGATGAAGATGATAATCGTATTCCTGAGAGAGAGCCTACATGGTTTGA 840
consensus_9631#1 ------------------------------------------------------------
consensus_9631#0 TCGAAAAAACAAAGAAGAAATTGAAATCGACGAAGACAGTGATTAAAAGAAAGCCTAATT 900
consensus_9631#1 ------------------------------------------------------------
consensus_9631#0 TTATATTTTTGTATATTTTTAAAATATTGTACAGTCAAATACACATTTATTAAATCCAGT 960
consensus_9631#1 ------------------------------------------------------------
consensus_9631#0 AGAAAAAAAAAAAAAAAAATTAATTGTAGTAGAGATATTCACTGGTTTATGACTCCTCAT 1020
consensus_9631#1 ------------------------------------------------------------
consensus_9631#0 CTGGCGGTAACCAATCGACAGTAACTGAGCACTGTGATCCATTAAAAAAGTACCAGTTTC 1080
consensus_9631#1 ------------------------------------------------------------
consensus_9631#0 CATGCGGTGCACCTTTTCGTGTTATGGCCCTGATTATTTCCTGGGACACAACACCACCAA 1140
consensus_9631#1 ------------------------------------------------------------
consensus_9631#0 GTACTGGATTAACAGCTGGGATTGTAGGACCACAACAACATTCTAAATCTTCAATGGAAA 1200
consensus_9631#1 ------------------------------------------------------------
consensus_9631#0 GAATTGTTTCATCTACATCCAGAAACTTTGATACATTTTGCCATTGGGATTGTAAATATG 1260
consensus_9631#1 ------------------------------------------------------------
consensus_9631#0 GTAGTGTAAATGGTGCTTCGTCGATAGAGCA 1291
consensus_9631#1 -------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||