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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9633#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 914 fasta sequence
[NAGCCAAGAATGGGCACGACTTTGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTACAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATAATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTGGCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAAGTCCATTATTTAATGAAAATTCCAAAATGGATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTATCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAATAGCAGTAGCAGCGGTAGAATCAGTCCTACTCCAGATGACAGGAACTACTCTCGAAATACAATACCACCATCTATGAAATCTAAAAATAATCTCCATTATGTTAAAAGACTTACACATAAAGTAAAATGGAAATCTCCTATGGAAATATCAAAATCAAAACAACGTGTTATTGAATGGTTAAAACATCAAGAATCGTATATGTCACAATTTATTATGTGAATAATGAAAATATTATTGATTATTAATTTGTTAGTAGTATATTTTATTCTTTAGAAAATTACTTCCCCTATTGTACAGAATTTATATAATTAAATAAATAGATGATATTATAATGATATTCTTAATATTTGGGAAATCAATAAAGTTTGGACACTTCAGAAGTTTGGATCGTTACGTTACAAACGCCTGTTACTCTCA]
[+] EMBL CD081431 [NAGCCAAGAATGGGCACGAGGTCGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTACAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATAATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTGGCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAAGTCCATTATTTAATGAAAATTCCAAAATGGATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTATCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAATAGCAGTAGCAGCGGTAGAATCAGTCCTACTCCAGATGACAGGAACTACTCTCGAAATACAATACCACCATCTATGAAATCTAAAAATAATCTCCATTATGTTAAAAGACTTACACATAAAGTAAAATGGAAATCTCCTATGGAAATATCANAATCAAAACAACGTGTTATTGAATGGTTAAAACATCAAGAATCGTATATGTCACAA ]
[+] EMBL CD133099 [ aACTTTGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTACAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATAATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTGGCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAAGTCCATTATTTAATGAAAATTCCAAAATGGATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTATCTTCTTGGGAAAAGCGAAGGGTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAATAGCAGGAGCAGCGGGAGAAT ]
[+] EMBL CD133112 [ ACTTTGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTACAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAGAGTATAATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTGGCACATGCAGCGATACAGAAAAGGAAGAAGAAGA ]
[+] EMBL CD189822 [ ACTTTGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTACAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATAATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAA ]
[+] EMBL CD078313 [ ATTACGCTAAGAATCGTACAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATAATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTGGCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAAGTCCATTATTTAATGAAAATTCCAAAATGGATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTATCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAATAGCAGTAGCAGCGGNAGAATCAGTCCTACTCCAGATGACAGGAACTACTCTCGAAATACAATACCACCATCTATGAAATCTAAAAATAATCTCCATTATGTTAAAAGACTTACACATAAAGTAAAATGGAAATCTCCTATGGAAATATCAAAATC AAACCACGTGTT ]
[+] EMBL CD078235 [ ATTACGGTAAGAATCGTACAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATAATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTGGCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAAGTCCATTATTTAATGAAAATTCCAAAATGGATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTATCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAATAGCAGTAGCAGCGGTAGAATCAGTCCTACTCCAGATGACAGGAACTACTCTCGAAATACAATACCACCATCTATGAAATCTAAAAATAATCTCCATTATGTTAAAAGACTTACACATANAGTANAATGGAAATCTCCTATGGAAATATCAAAATCAA ]
[-] EMBL CD072872 [ GAAGAAGAGGGAGAGGANCGAGAAGTTGAAAGTCCATTATTTAATGAAAATTCCAAAATGGATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTATCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAATAGCAGTAGCAGCGGTAGAATCAGTCCTACTCCAGATGACAGGAACTACTCTCGAAATACAATACCACCATCTATGAAATCTAAAAATAATCTCCATTATGTTAAAAGACTTACACATAAAGTAAAATGGAAATCTCCTATGGAAATATCAAAATCAAAACAACGTGTTATTGAATGGTTAAAACATCAAGAATCGTATATGTCACAATTTATTATGTGAATAATGAAAATATTATTGATTATTAATTTGTTAGTAGTATATTTTATTCTTTAGAAAATTACTTCCCCTATTGTACAGAATTTATATAATTAAATAAATAGA ]
[-] EMBL CD084454 [ TAAAAATAATCTCCATTATGTTAAAAGACTTACACATAAAGTAAAATGGAAATCTCCTATGGAAATATCAAAATCAAAACAACGTGTTATTGAATGGTTAAAACATCAAGAATCGTATATGTCACAATTTATTATGTGAATAATGAAGATATTATTGATTATTAATTTGTTAGTAGTATATTTTGTTCTTTAGAAAATTACTTCCCCTATTGTACAGAATTTATATAATTAAATAAATAGATGATATTATAATGATATTCTTAATATTTGGGAAATCAATAAAGTTTGGACACTTCAGAAGTTTGGATCGTTACGTTACAAACGCCTGTTACTCTCA]
[-] EMBL CD075258 [ CATAAAGTAAAATGGGAATTTCCTATGGAAATATCAAAATCAAAACCACGTGTTATTGAATGGTTTAAACATCAAGAATTGGATATGTCCCCATTTATTATGTGAATAATGAAAAAATTATTGATTATTAATTTGTTAGTAGGATATTTTATTTTTTAGAAAATTACTTCCCCTATTGGACAGAATTTATATAATTTAATAAATAGATGAT ]
consensusID : consensus_9633#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence
[CTTTGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTACAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATAATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTGGCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAAGTCCATTATTTAATGAAAATTCCAAAATGGTAAGATTTACTTTAAGTTTTCAAATAAAAGTTTTGATTGTAGGATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTATCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAATAGCAGTAGCAGCGGTAGAATCAGTCCTA]
[-] EMBL CD133434 [CTTTGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTACAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATAATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAGGGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATGTTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTGGCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAAGTCCATTATTTAATGAAAATTCCAAAATGGTAAGATTTACTTTAAGTTTTCAAATAAAAGTTTTGATTGTAGGATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTATCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAATAGCAGTAGCAGCGGTAGAATCAGTCCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9633#0 NAGCCAAGAATGGGCACGACTTTGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTA 60
consensus_9633#1 -------------------CTTTGACCTTGGCGTTGAAGTTTATTACGGTAAGAATCGTA 41
*****************************************
consensus_9633#0 CAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATA 120
consensus_9633#1 CAATAACTATTATGGATCCCTCATTCATAATAAAGCTGAACAACATAGCAGAAAAGTATA 101
************************************************************
consensus_9633#0 ATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAG 180
consensus_9633#1 ATTATGAATTCCGTGATTGTGACATAGTCGATTTAACAGAGTTTTCAGTCACTAAAACAG 161
************************************************************
consensus_9633#0 GGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATG 240
consensus_9633#1 GGGATTTCCTGTCGTCATTACCAGATAGTATATTATCAGATGATGAAAATTGTTGTGATG 221
************************************************************
consensus_9633#0 TTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTG 300
consensus_9633#1 TTGAAAATGTCCAACCATCTATTACTAAAACAGGGTCTTCTACAAATACTACTATTATTG 281
************************************************************
consensus_9633#0 GCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAA 360
consensus_9633#1 GCACATGCAGTGATACAGAAAAGGAAGAAGAAGAAGAGGGAGAGAAACGAGAAGTTGAAA 341
************************************************************
consensus_9633#0 GTCCATTATTTAATGAAAATTCCAAAATGG------------------------------ 390
consensus_9633#1 GTCCATTATTTAATGAAAATTCCAAAATGGTAAGATTTACTTTAAGTTTTCAAATAAAAG 401
******************************
consensus_9633#0 -------------ATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTA 437
consensus_9633#1 TTTTGATTGTAGGATTTCAATGGTATAAAAGCTGCCTTATCTTCATTGGAGAAATCAGTA 461
***********************************************
consensus_9633#0 TCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAAT 497
consensus_9633#1 TCTTCTTGGGAAAAGCGAAGGTTTCGTCAAATTAATGGGTCAAACTTACATACGAGCAAT 521
************************************************************
consensus_9633#0 AGCAGTAGCAGCGGTAGAATCAGTCCTACTCCAGATGACAGGAACTACTCTCGAAATACA 557
consensus_9633#1 AGCAGTAGCAGCGGTAGAATCAGTCCTA-------------------------------- 549
****************************
consensus_9633#0 ATACCACCATCTATGAAATCTAAAAATAATCTCCATTATGTTAAAAGACTTACACATAAA 617
consensus_9633#1 ------------------------------------------------------------
consensus_9633#0 GTAAAATGGAAATCTCCTATGGAAATATCAAAATCAAAACAACGTGTTATTGAATGGTTA 677
consensus_9633#1 ------------------------------------------------------------
consensus_9633#0 AAACATCAAGAATCGTATATGTCACAATTTATTATGTGAATAATGAAAATATTATTGATT 737
consensus_9633#1 ------------------------------------------------------------
consensus_9633#0 ATTAATTTGTTAGTAGTATATTTTATTCTTTAGAAAATTACTTCCCCTATTGTACAGAAT 797
consensus_9633#1 ------------------------------------------------------------
consensus_9633#0 TTATATAATTAAATAAATAGATGATATTATAATGATATTCTTAATATTTGGGAAATCAAT 857
consensus_9633#1 ------------------------------------------------------------
consensus_9633#0 AAAGTTTGGACACTTCAGAAGTTTGGATCGTTACGTTACAAACGCCTGTTACTCTCA 914
consensus_9633#1 ---------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||