These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9635#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 460 fasta sequence [TTTGCTTCCAATTTTATCATTAATCAAGTATAGTTAGATTGTATCGGTGAATCCTCTCCCTCTCTCTCTCTCACTCTTCATGTATATTTATGTATATCTGTAGTTGTGCTTATTAGTTGCTACATGATTTATACATAATACTTTCGAATGGTCTTGCTGCATCTTGTTTTCTTCTTCTTCTTCAATTTTTCTCTGTTTTTTTCTCTTTTTTCT-GCTG-CACATTTTAATTTCTATTGTAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCTTCTTTTCACCGTATACAATAAAATGAGGGTTCTTATATTTTTGTTTTCTTCAAGAGTTCACAAAAGATCTGTCCAATACAACAATCGATCATTTTTGATCTTTACACGCACATATACCTCTTTTATTGATATCATCAATGGTGGTAAGCATTGTCACTAATCGTCTCCTAGTA] [+] EMBL CD153536 [TTTGCTTCCAATTTTATCATTAATCAAGTATAGTTAGATTGTATCGGTGAATCCTCTCCCTCTCTCTCTCTCACTCTTCATGTATATTTATGTATATCTGTAGTTGTGCTTATTAGTTGCTACATGATTTATACATAATACTTTCGAATGGTCTTGCTGCATCTTGTTTTCTTCTTCTTCTTCAATTTTTCTCTGTTTTTTTCTCTTTTTTCT GCTG CACATTTTAATTTCTATTGTAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCTTCTTTTCACCGTATACAATAAAATGAGGGTTCTTATATTTTTGTTTTCTTCAAGAGTTCACAAAAGATCTGTCCAATACAACAATCGATCATTTTTGATCTTTACACGCACATATACCTCTTTTATTGATATCATCACTGGTGGTAAGCATTGTCACTAATCGT ] [+] EMBL CD153514 [TTTGCTTGCAATTTTATCATTAATCAAGTATAGTTAGATTGTATCGGTGAATCCTCTCCCTCTCTCTCTCTCACTCTTCATGTATATTTATGTATATCTGTAGTTGTGCTTATTAGTTGCTACATGATTTATACATAATACTTTCGAATGGTCTTGCTGCATCTTGTTTTCTTCTTCTTCTTCAATTTTTCTCTGTTTTTTTCTCTTTTTTCT GCTG CACATTTTAATTTCTATTGTAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCTTCTTTTCACCGTATACAATAAAATGAGGGTTCTTATATTTGTGTTTTCTTCAAGAGTTCACAAAAGATCTGTCCAATACAACAATCGGTCATTTTTGATCTTTACACGCACATATACCTCTTTTATTGATATCATCAATGGTGGTAAGCATTGTCACTAATCG ] [+] EMBL CD153512 [TTTGCTTCCAATTTTATCATTAATCAAGTATCGTTAGATTGTATCGGTGAATCCTCTCCCTCTCTCTCTCTCACTCTTCATGTATATTTATGTATATCTGTAGTTGTGCTTATTAGTTGCTACATGATTTATACATAATACTTTCGAATGGTCTTGCTGCATCTTGTTTTCTTCTTCTTCTTCAATTTTTCTCTGTTTTTTTCTCTTTTTTCT GCTG CACATTTTAATTTCTATTGTAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCTTCTTTTCACCGTATACAATAAAATGAGGGTTCTTATATTTTTGTTTTCTTCAAGAGTTCACAAAAGATCTGTCCAATACAACAATCGATCATTTTTGATCTTTACACGCACATATACCTCTTTTATTGATATCATCAATGGTGGGTAGCATTGTCAC ] [+] EMBL CD153563 [TTTGCTTCCAATTTTATCATTAATCAAGTATCGTTAGATTGTATCGGTGAATCCTCTCCCTCTCTCTCTCTCACTCTTCATGTATATTTATGTATATCTGTAGTTGTGCTTATTAGTTGCTACATGATTTATACATAATACTTTCGAATGGTCTTGCTGCATCTTGTTTTCTTCTTCTTCTTCAATTTTTCTCTGTTTTTTTCCCTTTTTTCT GCTG CACATTTTAATTTCTATTGTAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCTTCTTTTCACCGTATACAATAAAATGAGGGTTCTTATATTTGTGTTTTCTTCAAGAGTTCACAAAAGATCTGTCCAATACAACAATCGATCATTTTTGATCTTTACACGCACATATACCTCTTTTATTGATATCATCAATGGTGGTAAG ] [+] EMBL CD153504 [ TACATCATAGTTTCGAATGGTCTAGCTGCATCTTGTTTTCTTCTTCTTCTTCAATTTTTCTCTGTTTTTTTCTCTTTTTTCT GCTG CACATTTTAATTTCTATTGTAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCTTCTTTTCACCGTATACAATAAAATGAGGGTTCTTATATTTTTGTTTTCTTCAAGAGTTCACAAAAGATCTGTCCAATACAACAATCGATCATTTTTGATCTTTACACGCACATATACCTCTTTTATTGATATCATCAATGGTGGTAAGCATTG ] [+] EMBL AW171923 [ ACATAATACTTTCGAATGGTCTTGCTGCATCTTGTTTTCTTCTTCTTCTTCAATTTTTCTCTGTTTTTTTCTCTTTTTTCT GCTGACACATTTTAATTTCTATTGTAACCAATACATAAACTAAAGTGTATTCATCTATG ] [+] EMBL CD153498 [ CTTGTTTTCTTCTTCTTCTTCAATTTTTCTCTGTTTTTTTCTCTTTTTTCTCGCAG CGCATTTTAATTTCTATTGTAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCTTCTTTTCACCGTATACAATAAAATGAGGGTTCTTATATTTTAGTATTCTTCAAGAGTTCACAAAAGATCTGTCCAATACAACAATCGATCATTTTTGATCTTTACACGCACATATACCTCTTTTATTGATATCATCAATGGTGGTCAGCATTGTCACTAATCGTCTCCTAGTA] consensusID : consensus_9635#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [TGTACTTCTGATTCTCTCATTAATCATCTATAACCGGTCAGTGATGTCCATTGATCTCCGTGGTCGCACGTTTACGCTTCCATTGTCGTGTCATGTATTTCTGTAGTGAGGTCCTATTAGGATTCACCAGGACTGTTTCTTACCAGCTTTCACATTGGACAAGCCGCATCTTGTTTTCTTCTTCTTCTTCAATTTTTCTCTGTTTTTTTCTCTTTTTTCTGCTGCACATTTTAATTTCTATTGTAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCTTCTTTTCACCGTATACAATAAAATGAGGGTTCTTATATTTTTGTTTTCTTCAAGAGTTCACAAAAGATCTGTCCAATACAACAATCGATCATTTTTGATCTTTACACGCACATATACCTCTTTTATTGATATCATCAATGGTGGTAAGCAT] [+] EMBL CD153554 [TGTACTTCTGATTCTCTCATTAATCATCTATAACCGGTCAGTGATGTCCATTGATCTCCGTGGTCGCACGTTTACGCTTCCATTGTCGTGTCATGTATTTCTGTAGTGAGGTCCTATTAGGATTCACCAGGACTGTTTCTTACCAGCTTTCACATTGGACAAGCCGCATCTTGTTTTCTTCTTCTTCTTCAATTTTTCTCTGTTTTTTTCTCTTTTTTCTGCTGCACATTTTAATTTCTATTGTAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCTTCTTTTCACCGTATACAATAAAATGAGGGTTCTTATATTTTTGTTTTCTTCAAGAGTTCACAAAAGATCTGTCCAATACAACAATCGATCATTTTTGATCTTTACACGCACATATACCTCTTTTATTGATATCATCAATGGTGGTAAGCAT] consensusID : consensus_9635#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence [ATTAGTTGCTACATGATTTATACATAATACTCTGGAAATGGTCTTGCTGCATCTTGTTTTTCTTCTTCTTCAATTTTNCTCTGTTTTTTTTNCTCTTTTTNCTGCTGCACATTTTAATTTCTATTGGTAACCAATACATAAACTAAAGTGTATCCATCTATGTATTTATATCTTAGCTNCTTTNCACCGTATACAATAAAATGAGGGTTCTTATATTTTGGGTTTCCTCCAAAAGTTCACAAAANATCTGTCCAATAACAACAATCGATCATTTTNGAATCTTTACACGCACATN] [+] EMBL AA559736 [ATTAGTTGCTACATGATTTATACATAATACTCTGGAAATGGTCTTGCTGCATCTTGTTTTTCTTCTTCTTCAATTTTNCTCTGTTTTTTTTNCTCTTTTTNCTGCTGCACATTTTAATTTCTATTGGTAACCAATACATAAACTAAAGTGTATCCATCTATGTATTTATATCTTAGCTNCTTTNCACCGTATACAATAAAATGAGGGTTCTTATATTTTGGGTTTCCTCCAAAAGTTCACAAAANATCTGTCCAATAACAACAATCGATCATTTTNGAATCTTTACACGCACATN] consensusID : consensus_9635#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence [CGACGCCAGAAATTCGGCACGAGGCTGCATCTTGTTTTCTTCTTCTTCTTCAATTTTTCTCTGTTTTTTTCTCTTTTTTCTGCTGCACATTTTAATTTCTATTGTAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCTTCTTTTCACCGTATACAATAAAATGAGGGTCTTATATTTTTGTTTC] [+] EMBL CD077743 [CGACGCCAGAAATTCGGCACGAGGCTGCATCTTGTTTTCTTCTTCTTCTTCAATTTTTCTCTGTTTTTTTCTCTTTTTTCTGCTGCACATTTTAATTTCTATTGTAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCTTCTTTTCACCGTATACAATAAAATGAGGGTCTTATATTTTTGTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9635#1 TGTACTTCTGATTCTCTCATTAATCATCTATAACCGGTCAGTGATGTCCATTGATCTCCG 60 consensus_9635#3 ------------------------------------------------------------ consensus_9635#0 ---TTTGCTTCCAATTTTATCATTAATCAAGTATAGTTAGATTGTATCGGTGAATCCTCT 57 consensus_9635#2 ------------------------------------------------------------ consensus_9635#1 TGGTCGCACGTTTACGCTTCCATTGTCGTGTCATGTATTTCTGTAGTGAGGTCCTATTAG 120 consensus_9635#3 ------------------------------------------------------------ consensus_9635#0 CCCTCTCTCTCTCTCACTCTTCATGTATATTTATGTATATCTGTAGTT--GTGCTTATTA 115 consensus_9635#2 --------------------------------------------------------ATTA 4 consensus_9635#1 GATTCACCAGGACTGTTTCTTACCAGCTTTCACATTGGAC---AAGCCGCATCTTGTTTT 177 consensus_9635#3 ----------------------CGACGCCAGAAATTCGGCACGAGGCTGCATCTTGTTTT 38 consensus_9635#0 GTTGCTACATGATTTATACATAATACTTTCGAA--TGGTC---TTGCTGCATCTTGTTTT 170 consensus_9635#2 GTTGCTACATGATTTATACATAATACTCTGGAAA-TGGTC---TTGCTGCATCTTGTTTT 60 * * * * * ** ************ consensus_9635#1 CTTCTTCTTCTTCAATTTTTCTCTGTTTTTTT--CTCTTTTTTCTGCTGCACATTTTAAT 235 consensus_9635#3 CTTCTTCTTCTTCAATTTTTCTCTGTTTTTTT--CTCTTTTTTCTGCTGCACATTTTAAT 96 consensus_9635#0 CTTCTTCTTCTTCAATTTTTCTCTGTTTTTTT--CTCTTTTTTCTGCTGCACATTTTAAT 228 consensus_9635#2 --TCTTCTTCTTCAATTTTNCTCTGTTTTTTTTNCTCTTTTTNCTGCTGCACATTTTAAT 118 ***************** ************ ******** ***************** consensus_9635#1 TTCTATTG-TAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCT 294 consensus_9635#3 TTCTATTG-TAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCT 155 consensus_9635#0 TTCTATTG-TAACCAATACATAAACTAAAGTGTATTCATCTATGTATTTATATCTTAGCT 287 consensus_9635#2 TTCTATTGGTAACCAATACATAAACTAAAGTGTATCCATCTATGTATTTATATCTTAGCT 178 ******** ************************** ************************ consensus_9635#1 TCTTTTCACCGTATACAATAAAATGAGGGTTCTTATATTTTTG-TTTTCTTCAAGAGTTC 353 consensus_9635#3 TCTTTTCACCGTATACAATAAAATGAGGGT-CTTATATTTTTG-TTTC------------ 201 consensus_9635#0 TCTTTTCACCGTATACAATAAAATGAGGGTTCTTATATTTTTG-TTTTCTTCAAGAGTTC 346 consensus_9635#2 NCTTTNCACCGTATACAATAAAATGAGGGTTCTTATATTTTGGGTTTCCTCCAAAAGTTC 238 **** ************************ ********** * *** consensus_9635#1 ACAAAAGATCTGTCCAATA-CAACAATCGATCATTTTTGA-TCTTTACACGCACATATAC 411 consensus_9635#3 ------------------------------------------------------------ consensus_9635#0 ACAAAAGATCTGTCCAATA-CAACAATCGATCATTTTTGA-TCTTTACACGCACATATAC 404 consensus_9635#2 ACAAAANATCTGTCCAATAACAACAATCGATCATTTTNGAATCTTTACACGCACATN--- 295 consensus_9635#1 CTCTTTTATTGATATCATCAATGGTGGTAAGCAT---------------------- 445 consensus_9635#3 -------------------------------------------------------- consensus_9635#0 CTCTTTTATTGATATCATCAATGGTGGTAAGCATTGTCACTAATCGTCTCCTAGTA 460 consensus_9635#2 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||