cluster # 9639

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Schistosoma mansoni
cluster # 9639 cluster # 9639 Sequences # 10 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9639#0 length = 714 sequences # 8

consensus_9639#1 length = 372 sequences # 1
consensus_9639#2 length = 300 sequences # 1

consensusID : consensus_9639#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 714
fasta sequence

                              [TCAGTCTACGGAATCCGATCGCTTAGGATCAAACAAAAAAT-CTC-GGC-GGGCAAG-AAATAAAAATGTAACAAAACGTCCGTCCGAACATCCAGATTCTATTATGAGCAGTAAAGACCATTGTAGTGTAAACAATCAGAATTGTCTATCTCTACTCATCACCAACCTACCCAAACACATAAATTATTCAATGCTCAAAGACGCCATACCATCAGCTGCACGCTTGCATCTGTTCAGAAAGTCTGGGAAGCGTTTAGCTTTTGCCAATTTCAACACCGTGGATGACTATTCAAATGCTACTAG-TCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGCCATCGTTTAGGCAAGTTACGCGCCATGATAAAACTGAAAAGAAAA-AACCTGAGAGTGATGAATTAAGACTGACTATTCGCAACTTACCATACTCGATTACT-AAAACTGAGTTAGAAGATGAATTTCCTACAGCCAAATCAATCATAATAAATACGAAGAAAACTGGGGTTAACAAAGGATCCTGTTTACTTGAGTT-TGAATGTCATGATGATCTTCAAGTTGTTCTGGACGCTTGTCAAAATAAAGTGATTGGTGGTCGCCGTGTATCTGCCTTACCTGGTCTTCATTTTGAAATTAAATCCGAAAATATGAAAACAAATACTAAAGAAGCCTCTACATTTGGTATAAAAATATGCAAACTGTCTACAGTAATAGAAGA]

[+] EMBL CD064942             [TCAGTCTACGGAATCCGATCGCTTAGGATCAAACAAAAAAT CTC GGC GGGCAAG AAATAAAAATGTAACAAAACGTCCGTCCGAACATCCAGATTCTATTATGAGCAGTAAAGACCATTGTAGTGTAAACAATCAGAATTGTCTATCTCTACTCATCACCAACCTACCCAAACACATAAATTATTCAATGCTCAAAGACGCCATACCATCAGCTGCACGCTTGCATCTGTTCAGAAAGTCTGGGAAGCGTTTAGCTTTTGCCAATTTCAACACCGTGGATGACTATTCAAATGCTACTAG TCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGCCATCGTTTAGGCAAGTTACGCGCCATGATAAAACTGAAAAGAAAAGAACCTGAGAGTGATGAATTAAGACTGACTATTCGCAACTTACCATACTCGATTACT AAAACTGAGTTAGAAGATGAATTTCCTACAGCCAAATCAATCATAATAAATACGAAGAAAACTGGGGTTAACAAAGGATCCTGTTTACTTGAGTT TGAATGTCATGATGATCTTCAAGTTGTTCTGCACGCTTGTCAAAATAAAGTGATTGGTGGTCGCCGTGTATCTGCCTTACCT                                                                                                     ]
[+] EMBL CD127025             [                                     AAATGCTCGGGCGGGGCAAGTAAATAAAAATGTAACAAAACGTCCGTCCGAACATCCAGATTCTATTATGAGCAGTAAAGACCATTGTAGTGTAAACAATCAGAATTGTCTATCTCTACTCATCACCAATCTACCCAAACACATAAATTATTCAATGCTCAAAGACGCCATACCATCAGCTGCACGCTTGCATCTGTTCAGAAAGTCTGGGAAGCGTTTAGCTTTTGCCAATTTCAACACCGTGGATGACTATTCAAATGCTACTAGTTCGTTTGGAGGGACTTGAGTTTGACGGGGTCGAG                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD147447             [                                                                                                                                                                                                                        CTGCACGCTTGCATCTGTTCAGAAAGTCTGGGAAGCGTTTAGCTTTTGCCAATTTCAACACCGTGGATGACTATTCAAATGCTACTAG TCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGCCATTGTTTAGGCAAGTTACGCGCCATGATAAAACTGAAAAGAAAA AACCTGAGAGTGACGAATTAAGACTGACTATTCGCAACTTACCATACTCGATTACTAAAAACTGAGTTAGAAGATGAATTTCCTACAGCCAAATCAATCATAATAAATACGAAGAAAACTGGGGTTAACAAAGGATCCTGTTTACTTGAGTTCGGCATGTCATGATGATCTTCACGTTGTTCTGGACGCTTGTCAAAATCAAGTGATTGGTGGTCGCCGTGTAT                                                                                                                ]
[-] EMBL CD097404             [                                                                                                                                                                                                                         TGCACGCTTGCATCTGTTCAGAAAGTCTGGGAAGCGTTTAGCTTTTGCCAATTTCAACACCGTGGATGACTATTCAAATGCTACTAG TCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGCCATCGTTTAGGCAAGTTACGCGCCATGATAAAACTGAAAAGAAAA AACCTGAGAGTGATGAATCAAGACTGACTATTCGCAACTTACCATACTCAATTACT AAAACTGAGTTAGAAGATGAATTTCCTACAGCCAAATCAATCATAATAAATACGAAGAAAACTGGGGTTAACAAAGGATCCTGTTTACTTGAGTT TGAATGTCATGATGATCTTCAAGTTGTTCTGGACGCTTGTCAAAATAAAGTGATTAGTGGTCGCCGTGTATC                                                                                                               ]
[-] EMBL CD097382             [                                                                                                                                                                                                                         TGCACGCTTGCATCTGTTCAGAAAGTCTGGGAAGCGTTTAGCTTTTGCCAATTTCAACACCGTGGATGACTATTCAAATGCTACTAG TCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGCCATCGTTTAGGCAAGTTACGCGCCATGATAAAACTGAAAAGAAAA AACCTGAGAGTGATGAATTAAGACTGACTATTCGCAACTTACCATACTCGATTACT AAAACTGAGTTAGAAGATGAATTTCCTACAGCCAAATCAATCATAATAAATACGAAGAAAACTGGGGTTAACAAAGGATCCTGTTTACTTGAGTT TGAATGTCATGATGATCTTCAAGTTGTTCTGGACGCTCGTCAAAATAAAGTGATTAGTGGTCGCCGTGTATC                                                                                                               ]
[-] EMBL CD158859             [                                                                                                                                                                                                                                                                                                ATTCAAATGCTACTAG TCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGCCATCGTTTAGGCAAGTTACGCGCCATGATAAAACTGAAAAGAAAA AACCTGAGAGTGATGAATTAAGACCGACTATTCGCAACTTACCATACTCGATTACT AAAACTGAGTTAGAAGATGAATTTCCTACAGCCAAATCAATCATAATAAATACGAAGAAAACTGGGGTTAACAAAGGATCCTGTTTACTTGAGTT TGAATGTCATGATGATCTTCAAGTTGTTCTGGACGCTTGTCAAAATAAAGTG                                                                                                                                   ]
[+] EMBL CD145405             [                                                                                                                                                                                                                                                                                                                                                                                                      TGAGAGTGATGAATTAAGACTGACTATTCGCAACTTACCATACTCGATTACT AAAACTGAGTTAGAAGATGAATTTCCTACAGCCAAATCAATCATAATAAATACGAAGAAAACTGGGGTTAACAAAGGATCCTGTTTACTTGAGTT TGAATGTCATGATGATCTTCAAGTTGTTCTGGACGCTTGTCAAAATAAAGTGATTGGTGGTCGCCGTGTATCTGCCTTACCTGGTCTTCATTTTGAAATTAAATCCGAAAATATGAAAACAAATACTAAAGAAGCCTCTACATTTGGTATAAAAATATGCAAACTGTCTACAGTAATAGAAGA]
[-] EMBL CD126995             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGTTACAACATCAATTTCCTACAGCCAAATCAATCATAATAAATACCAAGAAAACTGGGGTTAACATAGGATCCTGTTCACTTGAGTT TGAATGTCATGATGATCTTCAAGTTGTTCTGCACGCTTGTCAAAATAAAGTGATTAGTGGTCGCCGTGTACCTGCCTTACCg                                                                                                     ]




>consensus_9639#0
TCAGTCTACGGAATCCGATCGCTTAGGATCAAACAAAAAATCTCGGCGGGCAAGAAATAA
AAATGTAACAAAACGTCCGTCCGAACATCCAGATTCTATTATGAGCAGTAAAGACCATTG
TAGTGTAAACAATCAGAATTGTCTATCTCTACTCATCACCAACCTACCCAAACACATAAA
TTATTCAATGCTCAAAGACGCCATACCATCAGCTGCACGCTTGCATCTGTTCAGAAAGTC
TGGGAAGCGTTTAGCTTTTGCCAATTTCAACACCGTGGATGACTATTCAAATGCTACTAG
TCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGCCATCGTTTAGGCAAGTTACGCGCCA
TGATAAAACTGAAAAGAAAAAACCTGAGAGTGATGAATTAAGACTGACTATTCGCAACTT
ACCATACTCGATTACTAAAACTGAGTTAGAAGATGAATTTCCTACAGCCAAATCAATCAT
AATAAATACGAAGAAAACTGGGGTTAACAAAGGATCCTGTTTACTTGAGTTTGAATGTCA
TGATGATCTTCAAGTTGTTCTGGACGCTTGTCAAAATAAAGTGATTGGTGGTCGCCGTGT
ATCTGCCTTACCTGGTCTTCATTTTGAAATTAAATCCGAAAATATGAAAACAAATACTAA
AGAAGCCTCTACATTTGGTATAAAAATATGCAAACTGTCTACAGTAATAGAAGA

consensusID : consensus_9639#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 372
fasta sequence

                              [TGCACGCTTGCATCTGTTCAGAAAGTCTGGGAAGCGTTTAGCTTTTGCCAATTTCAACACCGTGGATGACTATTCAAATGCTACTAGTCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGGTAAGATGATATCAGCAAAATTCCAGTTAGCAAGCAATGTTTCTTAAGAGTTTTAGACCAGGTTATTTAGTTTTTAACATCACCATATACAGCAAAGGGTTTGGTTTTTCTAAGTTGAGTAGTCGTGCTGAGTAACATTAGTAATGGATTCCAATTTTGGTCTGATTCTTGTTTTCGAAACTATTTGGTTACTTTTCTTGAGCTAGCTACCCCTCTTTGGACATAGGCTGCTGACCAAAAATCTCCAAGTA]

[-] EMBL CD086774             [TGCACGCTTGCATCTGTTCAGAAAGTCTGGGAAGCGTTTAGCTTTTGCCAATTTCAACACCGTGGATGACTATTCAAATGCTACTAGTCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGGTAAGATGATATCAGCAAAATTCCAGTTAGCAAGCAATGTTTCTTAAGAGTTTTAGACCAGGTTATTTAGTTTTTAACATCACCATATACAGCAAAGGGTTTGGTTTTTCTAAGTTGAGTAGTCGTGCTGAGTAACATTAGTAATGGATTCCAATTTTGGTCTGATTCTTGTTTTCGAAACTATTTGGTTACTTTTCTTGAGCTAGCTACCCCTCTTTGGACATAGGCTGCTGACCAAAAATCTCCAAGTA]




>consensus_9639#1
TGCACGCTTGCATCTGTTCAGAAAGTCTGGGAAGCGTTTAGCTTTTGCCAATTTCAACAC
CGTGGATGACTATTCAAATGCTACTAGTCGTTTGGAGGGACTTGAGTTTGACGGGGTCAA
GGTAAGATGATATCAGCAAAATTCCAGTTAGCAAGCAATGTTTCTTAAGAGTTTTAGACC
AGGTTATTTAGTTTTTAACATCACCATATACAGCAAAGGGTTTGGTTTTTCTAAGTTGAG
TAGTCGTGCTGAGTAACATTAGTAATGGATTCCAATTTTGGTCTGATTCTTGTTTTCGAA
ACTATTTGGTTACTTTTCTTGAGCTAGCTACCCCTCTTTGGACATAGGCTGCTGACCAAA
AATCTCCAAGTA

consensusID : consensus_9639#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 300
fasta sequence

                              [ATTCAAATGCTACTAGTCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGCCATCGTTTAGGCAAGTTACGCGCCATGATAAAACTGAAAAGAAAAAACCTGAGAGTGATGAATTAAGACCGACTATTCGCAGCAAGCCATACTATCATGGTAGATATCCGTTAAACCATTAAGCTCATTCAGTAGAATCCACCATACTAAGCTTTTCAATCAGTCTGTTTGACAAAAGTGCCTTCTCTACAAGAATATGAGCGTAGTGGAAATCCGCCAACTTCAGGCTCATTTGAAGAGTGTTGTTTC]

[-] EMBL CD158858             [ATTCAAATGCTACTAGTCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGCCATCGTTTAGGCAAGTTACGCGCCATGATAAAACTGAAAAGAAAAAACCTGAGAGTGATGAATTAAGACCGACTATTCGCAGCAAGCCATACTATCATGGTAGATATCCGTTAAACCATTAAGCTCATTCAGTAGAATCCACCATACTAAGCTTTTCAATCAGTCTGTTTGACAAAAGTGCCTTCTCTACAAGAATATGAGCGTAGTGGAAATCCGCCAACTTCAGGCTCATTTGAAGAGTGTTGTTTC]




>consensus_9639#2
ATTCAAATGCTACTAGTCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGCCATCGTTTA
GGCAAGTTACGCGCCATGATAAAACTGAAAAGAAAAAACCTGAGAGTGATGAATTAAGAC
CGACTATTCGCAGCAAGCCATACTATCATGGTAGATATCCGTTAAACCATTAAGCTCATT
CAGTAGAATCCACCATACTAAGCTTTTCAATCAGTCTGTTTGACAAAAGTGCCTTCTCTA
CAAGAATATGAGCGTAGTGGAAATCCGCCAACTTCAGGCTCATTTGAAGAGTGTTGTTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9639#0      TCAGTCTACGGAATCCGATCGCTTAGGATCAAACAAAAAATCTCGGCGGGCAAGAAATAA 60
consensus_9639#2      ------------------------------------------------------------
consensus_9639#1      ------------------------------------------------------------
                                                                                  

consensus_9639#0      AAATGTAACAAAACGTCCGTCCGAACATCCAGATTCTATTATGAGCAGTAAAGACCATTG 120
consensus_9639#2      ------------------------------------------------------------
consensus_9639#1      ------------------------------------------------------------
                                                                                  

consensus_9639#0      TAGTGTAAACAATCAGAATTGTCTATCTCTACTCATCACCAACCTACCCAAACACATAAA 180
consensus_9639#2      ------------------------------------------------------------
consensus_9639#1      ------------------------------------------------------------
                                                                                  

consensus_9639#0      TTATTCAATGCTCAAAGACGCCATACCATCAGCTGCACGCTTGCATCTGTTCAGAAAGTC 240
consensus_9639#2      ------------------------------------------------------------
consensus_9639#1      ---------------------------------TGCACGCTTGCATCTGTTCAGAAAGTC 27
                                                                                  

consensus_9639#0      TGGGAAGCGTTTAGCTTTTGCCAATTTCAACACCGTGGATGACTATTCAAATGCTACTAG 300
consensus_9639#2      --------------------------------------------ATTCAAATGCTACTAG 16
consensus_9639#1      TGGGAAGCGTTTAGCTTTTGCCAATTTCAACACCGTGGATGACTATTCAAATGCTACTAG 87
                                                                  ****************

consensus_9639#0      TCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGCCA---TCGTTTAGGCAAGTTACGCG 357
consensus_9639#2      TCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGCCA---TCGTTTAGGCAAGTTACGCG 73
consensus_9639#1      TCGTTTGGAGGGACTTGAGTTTGACGGGGTCAAGGTAAGATGATATCAGCAAAATTCCAG 147
                      **********************************  *   *  * *  ****  * *  *

consensus_9639#0      CCATGATAAAACTGAAAAGAAAAAACCTGAGAGTGATGAATTAAGACTGACTATTCGCAA 417
consensus_9639#2      CCATGATAAAACTGAAAAGAAAAAACCTGAGAGTGATGAATTAAGACCGACTATTCGCAG 133
consensus_9639#1      TTAGCAAGCAA-TGTTTCTTAAGAGTTTTAGACCAGGTTATTTAGTTT--TTAACATCAC 204
                        *  *   ** **      ** *   * ***       *** **      **    ** 

consensus_9639#0      CTTACCATACTCGATTACTAAAACTGAGTTAGAAGATGAATTTCCTACAGCCAAATCAAT 477
consensus_9639#2      CAAGCCATACTATCATGGTAGATATCCGTTAAACCATTAAGCTCATTCAGTAGAATCCAC 193
consensus_9639#1      CATAT-ACAGCAAAGGGTTTGGTTTTTCTAAGTTGAGTAGTCGTGCTGAGTAACATTAGT 263
                      *     * *         *     *   * *    *  *         **    **    

consensus_9639#0      CATA---ATAAATACGAAGAAAACTGGGGTTAACAAAGG-ATCCTGTTTACTTGAGTTTG 533
consensus_9639#2      CATA---CTAAGCTTTTCAATCAGTCTGTTTGACAAAAGTGCCTTCTCTACAAGAATATG 250
consensus_9639#1      AATGGATTCCAATTTTGGTCTGATTCTTGTTTTCGAAACTAT-TTGGTTACTTTTCT-TG 321
                       **       *           * *    **  * **       *   ***     * **

consensus_9639#0      AATGTCATGATGATCTTCAAGTTGTTCTGGACGCTTGTCAAAATAAAGTGATTGGTGGTC 593
consensus_9639#2      AGCGTAGTGGAAATCCGCCAACTTC-----AGGCTCATTTGAAGAGTGTTGTTTC----- 300
consensus_9639#1      AGCTAGCTACCCCTCTTTGGACATA---GGCTGCTGACCAAAAATCTCCAAGTA------ 372
                      *      *     **                 ***      **         *       

consensus_9639#0      GCCGTGTATCTGCCTTACCTGGTCTTCATTTTGAAATTAAATCCGAAAATATGAAAACAA 653
consensus_9639#2      ------------------------------------------------------------
consensus_9639#1      ------------------------------------------------------------
                                                                                  

consensus_9639#0      ATACTAAAGAAGCCTCTACATTTGGTATAAAAATATGCAAACTGTCTACAGTAATAGAAG 713
consensus_9639#2      ------------------------------------------------------------
consensus_9639#1      ------------------------------------------------------------
                                                                                  

consensus_9639#0      A 714
consensus_9639#2      -
consensus_9639#1      -