cluster # 9640

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Schistosoma mansoni
cluster # 9640 cluster # 9640 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9640#0 length = 656 sequences # 7

consensus_9640#1 length = 637 sequences # 3

consensusID : consensus_9640#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 656
fasta sequence

                              [GAAAGGCTGGGCAGTGGAGCACCAACGGATTCCAGTTTCTCTCGTAATATTTTCTTTTCAGATTCAAGCTTTTCCATCTTTTTCCATAATCTGTTCACTAAAGCTTCCTGTTCCTGCTCAAGTGCATTCTCTAATTCGATTTTCTCTCTGCGTAAACGATCTAAACAATCCTGTTTGTGATTCATATCCGTTTCTAGTTTTTCAATTCTTCTCATTAATTTGCTGACTTGATTCTCTTGTTCGCGCGCTAAAGTACGCTCCAGAGCAACTTTTTCTTGTCTGAGTTGTGTGAATTTACGATTAAGTTCATTGGTAAGACATTCTTCTTCCTGTTCATAGTTCAATGCGAGTGATTCTTTTTCTTTTTTTAACTCAGTGATCTTTTTCAACAAAGTATTGCTAATATACTCTTCTTCCTGTTCTGCTTTTGCTTGTATACTAACACTATTACGTCTCAGTTGCTGATTTAAGTCGTTTAGACCTTTGATCTTTAGTTTCAAAGTTTCTACCTCAGTTTTTAAAACTCGATTTTCTTGCTGTAAAGAGTCAATACGTCGTAAAATCTGTTCATTTGTAACCAATGAGTCTTTGGTACCATCAACGGAACTCGCATCAGATTCCAGTTCTAATTCAGAAGCGCTATCCGTCATTACGAA]

[-] EMBL CD149464             [GAAAGGCTGGGCAGTGGAGCACCAACGGATTCCAGTTTCTCTCGTAATATTTTCTTTTCAGATTCAAGCTTTTCCATCTTTTTCCATAATCTGTTCACTAAAGCTTCCTGTTCCTGCTCAAGTGCATTCTCTAATTCGATTTTCTCTCTGCGTAAACGATCTAAACAATCCTGTTTGTGATTCATATCCGTTTCTAGTCTTTCAATTCTTCTCATTAATTTGCTGACTTGATTCTCTTGTTCGCGCGCTAAAGTACGCTCCAGAGCAACTTTTTCTTGTCTGAGTTGTGTGAATTTACGATTAAGTTCATTGGTAAGACATTCTTCTTCCTGTTCATAGTTCAATGCGAGTGATTCTTTTTCTTTTTTTAACTCAGTGATCTTTTTCAACAAAGTATTGCTAATATACTCTTCTTCCTGTTCTGCCCTCGCTTGTATACTAAC                                                                                                                                                                                                                     ]
[+] EMBL CD094821             [                                                                                                                                                                 TAAACAATCCTGTTTGTGATTCATATCCGTTTCTAGTTTTTCAATTCTTCTCATTAATTTGCTGACTTGATTCTCTTGTTCGCGCGCTAAAGTACGCTCCAGAGCAACTTTTTCTTGTCTGAGATGTGTGAATTTACGATTAAGTTCATTGGTAAGACATTCTTCTTCCTGTTCATAGTTCAATGCGAGTGATTCTTTTTCTTTTTTTAACTCAGTGATCTTTTTCAACAAAGTATTGCTAATATACTCTTCTTCCTGTTCTGCTTTTGCTTGTATACTAACACTATTACGTCTCAGTTGCTGATTTAAGTCGTTTAGACCTTTGATCTTTAGTTTCAAAGTTTCTACCTCAGTTTTTAAAACTCGATTTTCTTGCTGTAAAGAGTCAATACGTCGTAAAATCTGTTCATTTGTAACCAATGAGTCTTTGGTACCATCAACGGAACTCGCATCAGATTCCAGTTCTAATTCAGAAGCGCTATCCGTCATTACGA ]
[+] EMBL CD094918             [                                                                                                                                                                 TAAACAATCCTGTTTGTGATTCATATCCGTTTCTAGTTTTTCAATTCTTCTCATTAATTTGCTGACTTGATTCTCTTGTTCGCGCGCTAAAGTACGCTCCAGAGCAACTTTTTCTTGTCTGAGTTGTGTGAATTTACGATTAAGTTCATTGGTAAGACATTCTTCTTCCTGTTCATAGTTCAATGCGAGTGATTCTTTTTCTTTTTTTAACTCAGTGATCTTTTTCAACAAAGTATTGCTAATATACTCTTCTTCCTGTTCTGCTTTTGCTTGTATACTAACACTATTACGTCTCAGTTGCTGATTTAAGTCGTTTAGACCTTTGATCTTTAGTTTCAAAGTTTCTACCTCAGTTTTTAAAACTCGATTTTCTTGCTGTAAAGAGTCAATACGTCGTAAAATCTGTTCATTTGTAACCAATGAGTCTTTGGTACCATCAACGGAACTCGCATCAGATTCCAGTTCTAATTCAGAAGCGCTATCCGTCATTACGA ]
[+] EMBL CD095208             [                                                                                                                                                                 TAAACAATCCTGTTTGTGATTCATATCCGTTTCTAGTTTTTCAATTCTTCTCATTAATTTGCTGACTTGATTCTCTTGTTCGCGCGCTAAAGTACGCTCCAGAGCAACTTTTTCTTGTCTGAGTTGTGTGAATTTACGATTAAGTTCATTGGTAAGACATTCTTCTTCCTGTTCATAGTTCAATGCGAGTGATTCTTTTTCTTTTTTTAACTCAGTGATCTTTTTCAACAAAGTATTGCTAATATACTCTTCTTCCTGTTCTGCTTTTGCTTGTATACTAACACTATTACGTCTCAGTTGCTGATTTAAGTCGTTTAGACCTTTGATCTTTAGTTTCAAAGTTTCTACCTCAGTTTTTAAAACTCGATTTTCTTGCTGTAAAGAGTCAATACGTCGTAAAATCTGTTCATTTGTAACCAATGAGTCTTTGGTACCATCAACGGAACTCGCATCAGATTCCAGTTCTA                            ]
[-] EMBL CD149495             [                                                                                                                                                                            GTTTGTGATTCATATCCGTTTCTAGTCTTTCAATTCTTCTCATTAATTTGCTGACTTGATTCTCTTGTTCGCGCGCTAAAGTACGCTCCAGAGCAACTTTTTCTTGTCTGAGTTGTGTGAATTTACGATTAAGTTCATTGGTAAGACATTCTTCTTCCTGTTCATAGTTCAATGCGAGTGATTCTTTTTCTTTTTTTAACTCAGTGATCTTTTTCAACAAAGTATTGNTAATATACTCTTCTTCCTGTTCTGCCCCCGCTTGTATACTAAC                                                                                                                                                                                                                     ]
[-] EMBL CD149554             [                                                                                                                                                                                                                                               TTCGCGCGCTAAAGTACGCTCCAGAGCAACTTTTTATTGTCTAAGTTGTGTGAATTTACGATTAAGTTCATTGGTAAGACATTATTCTTCCTGTTCATAGTTCAATGCGAGTGATTCTTTTTCTTTTTTTAACTCAGTGATCTTTTTCAACAAAGTATTGATAATATACTCTTCTTCCTGTTCTGCTTTTGCTTGTATACTAAC                                                                                                                                                                                                                     ]
[-] EMBL CD095334             [                                                                                                                                                                                                                                                                                                                                                                             TTTAAACTCAGTGATCTTTTTCAACAAAGTATTGCTAATATACTCTTCTTCCTGTTCTGCTTTTGCTTGTATACTAACACTATTACGTCTCAGTTGCTGATTTAAGTCGTTTAGACCTTTGATCTTTAGTTTCAAAGTTTCTACCTCAGTTTTTAAAACTCGATTTTCTTGCTGTAAAGAGTCAATACGTCGTAAAATCTGTTCATTTGTAACCAATGAGTCTTTGGTACCATCAACGGAACTCGCATCAGATTCCAGTTCTAATTCAGAAGCGCTATCCGTCATTACGAA]




>consensus_9640#0
GAAAGGCTGGGCAGTGGAGCACCAACGGATTCCAGTTTCTCTCGTAATATTTTCTTTTCA
GATTCAAGCTTTTCCATCTTTTTCCATAATCTGTTCACTAAAGCTTCCTGTTCCTGCTCA
AGTGCATTCTCTAATTCGATTTTCTCTCTGCGTAAACGATCTAAACAATCCTGTTTGTGA
TTCATATCCGTTTCTAGTTTTTCAATTCTTCTCATTAATTTGCTGACTTGATTCTCTTGT
TCGCGCGCTAAAGTACGCTCCAGAGCAACTTTTTCTTGTCTGAGTTGTGTGAATTTACGA
TTAAGTTCATTGGTAAGACATTCTTCTTCCTGTTCATAGTTCAATGCGAGTGATTCTTTT
TCTTTTTTTAACTCAGTGATCTTTTTCAACAAAGTATTGCTAATATACTCTTCTTCCTGT
TCTGCTTTTGCTTGTATACTAACACTATTACGTCTCAGTTGCTGATTTAAGTCGTTTAGA
CCTTTGATCTTTAGTTTCAAAGTTTCTACCTCAGTTTTTAAAACTCGATTTTCTTGCTGT
AAAGAGTCAATACGTCGTAAAATCTGTTCATTTGTAACCAATGAGTCTTTGGTACCATCA
ACGGAACTCGCATCAGATTCCAGTTCTAATTCAGAAGCGCTATCCGTCATTACGAA

consensusID : consensus_9640#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 637
fasta sequence

                              [GATTGCAAGCCAATACTTCCACATGGACTAGCTGCGCCACTTGCATTAGGATCCAATGCATCAATATCCATAGGACTTTGAGGTGGTAGTGTAAATGGTGCGCCATTACATTCAGATACATTGGATTTCGAAGTCAAATCATTGGGGATAGAGGAAGACTGACTTGATTGGGGAGCCTTTTCCTCACTACCGGATGAGATAGATATTCTACCAGGAGAAACAGGACACGTAACAGCAGAAGAGGTACCAATTGAACTAGATGAAGTGTGCGGCGGGTGACTGTGTTGTTTGAAAGAGCTACAAAGAATACCAAGTCCACTACTGATAGGACGGGGAACTGTTGAACTGTTATTAGGTATACCATCTGAAATACTAGCAAGGTTTTGGGCACTTGAAAGGCTGGGCAGTGGAGCACCAACGGATTCCAGTTTCTCTCGTAATATTTTCTTTTCAGATTCAAGCTTTTCCATCTTTTTCCATAATCTGTTCACTAAAGCTCCCTGTTCCTGCTCAAGTGCATTCTCTAATTCGATTTTCTCTCTGCGTAAACGATCTAAACAGTCCTGTTTGTGATTCATATCCGTTTCTAGTTTTTCAATTCTTCTCATCCGGTAGTGAGGAAAAGGCTCCCCAATCA]

[+] EMBL CD088314             [GATTGCAAGCCAATACTTCCACATGGACTAGCTGCGCCACTTGCATTAGGATCCAATGCATCAATATCCATAGGACTTTGAGGTGGTAGTGTAAATGGTGCGCCATTACATTCAGATACATTGGATTTCGAAGTCAAATCATTGGGGATAGAGGAAGACTGACTTGATTGGGGAGCCTTTTCCTCACTACCGGATGAGATAGATATTCTACCAGGAGAAACAGGACACGTAACAGCAGAAGAGGTACCAATTGAACTAGATGAAGTGTGCGGCGGGTGACTGTGTTGTTTGAAAGAGCTACAAAGAATACCAAGTCC                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD116361             [                                                      AATGCATCAATATCCATAGGACTTTGAGGTGGTAGTGTAAATGGTGCGCCATTACATTCAGATACATTGGATTTCGAAGTCAAATCATTGGGGATAGAGGAAGACTGACTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD095807             [                                                                                                                                                                     GATTGGGGAGCCTTTTCCTCACTACCGGATGAGACAGATATTCTACCAGGAGAAACAGGACACGTAACAGCAGAAGAGGTACCAATTGAACTAGATGAAGTGTGCGGCGGGTGACTGTGTTGTTTGAAAGAGCTACGAAGACTACCAGGTCCACTACTGATAGGACGGGGAACTGTTGAACTGTTATTAGGTATACCATCTGAAATACTAGCAAGGTTTTGGGCACTTGAAAGGCTGGGCAGTGGAGCACCAACGGATTCCAGTTTCTCTCGTAATATTTTCTTTTCAGATTCAAGCTTTTCCATCTTTTTCCATAATCTGTTCACTAAAGCTCCCTGTTCCTGCTCAAGTGCATTCTCTAATTCGATTTTCTCTCTGCGTAAACGATCTAAACAGTCCTGTTTGTGATTCATATCCGTTTCTAGTTTTTCAATTCTTCTCATCCGGTAGTGAGGAAAAGGCTCCCCAATCA]




>consensus_9640#1
GATTGCAAGCCAATACTTCCACATGGACTAGCTGCGCCACTTGCATTAGGATCCAATGCA
TCAATATCCATAGGACTTTGAGGTGGTAGTGTAAATGGTGCGCCATTACATTCAGATACA
TTGGATTTCGAAGTCAAATCATTGGGGATAGAGGAAGACTGACTTGATTGGGGAGCCTTT
TCCTCACTACCGGATGAGATAGATATTCTACCAGGAGAAACAGGACACGTAACAGCAGAA
GAGGTACCAATTGAACTAGATGAAGTGTGCGGCGGGTGACTGTGTTGTTTGAAAGAGCTA
CAAAGAATACCAAGTCCACTACTGATAGGACGGGGAACTGTTGAACTGTTATTAGGTATA
CCATCTGAAATACTAGCAAGGTTTTGGGCACTTGAAAGGCTGGGCAGTGGAGCACCAACG
GATTCCAGTTTCTCTCGTAATATTTTCTTTTCAGATTCAAGCTTTTCCATCTTTTTCCAT
AATCTGTTCACTAAAGCTCCCTGTTCCTGCTCAAGTGCATTCTCTAATTCGATTTTCTCT
CTGCGTAAACGATCTAAACAGTCCTGTTTGTGATTCATATCCGTTTCTAGTTTTTCAATT
CTTCTCATCCGGTAGTGAGGAAAAGGCTCCCCAATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9640#0      GAAAGGCTGGGCAGTGGAGCACCAACGGATTCCAGTTTCTCTCGTAATATTTTCTTTTCA 60
consensus_9640#1      ----GATTGCAAGCCAATACTTCCACATGGACTAGCTGCGCCACTTGCATTAGGATCC-- 54
                          *  **          *  * **     * ** * * *   *   ***    *    

consensus_9640#0      GATTCAAGCTTTTCCATCTTTTTCCATAATCTGTTCACTAAAGCTTCCTGTTCCTGCTCA 120
consensus_9640#1      AATGCATCAATATCCATAGGACTTTGAGGTGGTAGTGTAAATGGTGCGCCATTACATTCA 114
                       ** **    * *****     *      *         ** * * *    *     ***

consensus_9640#0      AGTGCATTCTCTAATTCGATTTTCTCTCTGCGTAAACGATCTAAACAATCCTGTTTGTGA 180
consensus_9640#1      GATACATTGGATTTCGAAGTCAAATCATTGGGGATA-GAGGAAGACTGACTTGATTGGGG 173
                        * ****   *       *    **  ** * * * **   * **   * ** *** * 

consensus_9640#0      TTCATATCCGTTTCTAGTTTTTCAATTCTTCTCATTAATTTGCTGACTTGATTCTCTTGT 240
consensus_9640#1      AGCCTTTTCCTCACTA-----CCGGATGAGATAGATATTCTACCAGGAGAAACAGGACAC 228
                        * * * * *  ***      *   *    *   ** * * *       *         

consensus_9640#0      TCGCGCGCTAAAGTACGCTCCAGAGCAACTTTTTCTTGTCTGAGTTGTGTGAATTTACGA 300
consensus_9640#1      GTA-ACAGCAGAAGAGGTACCAATTGAACTAGATGAAGTGTGCGGCGGGTGACTGTGTTG 287
                           *   * *  * *  ***    ****   *   ** ** *  * **** * *    

consensus_9640#0      TTAAGTTCATTGGTAAGACATTCTTCTTCCTGTTCATAGTTCAATGCGAGTGATTCTTTT 360
consensus_9640#1      TTTGAAAGAGCTACAAAGAATACCAAGTCCACTACTGA---TAGGACGGGGAACTGTTGA 344
                      **      *     **   ** *    ***  * *  *    *   ** *  * * **  

consensus_9640#0      TCTTTTTTTAACTCAGTGATCTTTTTCAACAAAGTATTGCTAATATACTCTTCTTCCTGT 420
consensus_9640#1      ACTGTTATTAGGTATACCATCT--------GAAATACTAGCAAGGT-TTTGGGCACTTGA 395
                       ** ** ***  *     ****         ** ** *   **  *  *      * ** 

consensus_9640#0      TCTGCTTT-TGCTTGTATACTAACACTATTACGTCTCAGTTGCTGATTTAAGTCGTTTAG 479
consensus_9640#1      AAGGCTGGGCAGTGGAGCACCAACGGATTCCAGTTTCTCTCG-TAATATTTTCTTTTCAG 454
                         ***      * *   ** ***    *   ** **  * * * ** *      ** **

consensus_9640#0      ACCTTTGATCTTTAGTTTCAAAGTTTCTACCTCAGTTTTTAAAACTCGATTTTCTTGCTG 539
consensus_9640#1      A--TTCAAGCTTTTCCATCTTTTTCCATAATCTGTTCACTAAAGCTCCCTGTTCCTGCTC 512
                      *  **  * ****    **    *   **      *   **** ***  * *** **** 

consensus_9640#0      TAAAG-AGTCAATACGTCGTAAAATCTGTTCATTTGTAACCAATGAGTCTTTGGTACCAT 598
consensus_9640#1      AAGTGCATTCTCTAATTCG---ATTTTCTCTCTGCGTAAACGAT--CTAAACAGTCCTGT 567
                       *  * * **  **  ***   * * * *   *  **** * **   *     ** *  *

consensus_9640#0      CAACGGAACTCGCATCAGATTCCAGTTCTAATTCAGAAGCGCTATCCGTCATTACGAA-- 656
consensus_9640#1      T--TGTGATTCATATCCGTTTCTAGTTTT--TCAATTCTTCTCATCCGGTAGTGAGGAAA 623
                          *  * **  *** * *** **** *  *  *        *****  * *  * *  

consensus_9640#0      --------------
consensus_9640#1      AGGCTCCCCAATCA 637