These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9641#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1040 fasta sequence [AAGGCAATGGAAATGACGGATGATCCTCTGGTTCTAGTTTTCAAAGCCTTAGACACAGAAAATAAGGGATATATTACTGTAGAGCAATTTGTATCTACTTTTAAAGAGTTTTATAATTCAAGTGGAGCTGATGGAGAAAGGAGATCATCACTTTCTTCAAATGACATCATGAAAGTAGTGCAAACTTTAGATCCAGAAAATGATGGAATTATACATTATGAAGATTTTAAGAAGGCTTTTGAGGGGAACATCAACTTTGATGAAGACAATACATCAAAGCATTCAAATTCTCTATCTAGGAATTTAGATGGGCAAAACGCATCCGTAAGGTCGAGCTTCCTTTCAGATGGTTTGGAGAACAAGACCGATGATAGTGGTGTGCATATGCACGATCCAACTTTATTTGATATTGACACTGACTCCGCCTTAAGCGCCGATGGACCAAACAACTTCTCATCCAGTGCAAATCCCTTATCAAGTCTACATCATGGTCCGGATTCTCCAGCGAGCGCTTCACAATCGGATATATTACTCGGTGATATGGAGTCTAATTTTGAATTGATTCGAGATCAAATGCGTCGAATGGAAGAACGTGTAGAAGGTCTAAAAATCAATAGAAATTCTGAAAGTGAAACACGTCTAGATCGTTTACGTGAAGAGAATGCTCGTTTAACTGCACAAATCACTGTTTTGGAAGAACGTCTTAAAGAAGCCGATGCAAGATCAAGTCGTGCATTAGAAGCTGAACGACAACATATGCAATCAATTTTGTCACGCTCTTCGCGAGAACATACTCAAGAATCAGAAACGTTACGTGCTCGGATTATTTCTTTAGAAAGTGAATGTTCTGAACTACGTGTTCAGTCAGCTCGTATCAAAGCAGACAACCAAGCGTATATTATCGTTATTGTTTCTAACACATTTAAATATAAAGAACATGTATAGTATCCAAACAAATTGTGTTTAGTATGCAAAAGTTTGTGGAGATTGCCTTCATTTTACATCATGAATTAACTTTAGTGAGACAATCACTAGAAACC] [+] EMBL CD116337 [AAGGCAATGGAAATGACGGATGATCCTCTGGTTCTAGTTTTCAAAGCCTTAGACACAGAAAATAAGGGATATATTACTGTAGAGCAATTTGTATCTACTTTTAAAGAGTTTTATAATTCAAGTGGAGCTGATGGAGAAAGGAGATCATCACTTTCTTCAAATGACATCATGAAAGTAGTGCAAACTTTAGATCCAGAAAATGATGGAATTATACATTATGAAGATTTTAAGAAGGCTTTTGAGGGGAACATCAACTTTGATGAAGACAATACATCAAAGCATTCAAATTCTCTATCTAGGAATTTAGATGGGCAAAACGCATCCGTAAGGTCGAGCTTCCTTTCAGATGGTTTGGAGAACAAGACCGATGATAGTGGTGTGCATATGCACGATCCAACTTTATTTGATATTGACACTGACTCCGCCTTAAGCGCCGATGGACAAAACAACTTCTCATCCAGTGCANATCCCTTATCAAGTCTACATCATGGTCCGGATTCTCCAGCGAGCGCTTCACAATCGGATATATTACTCGGTG ] [-] EMBL CD202555 [ TTCAAATTCTCTATCTAGGAATTTAGATGGGCAAAACGCATCCGTAAGGTCGAGCTTCCTTTCAGATGGTTTGGAGAACAAGACCGATGATAGTGGTGTGCATATGCACGATCCAACTTTATTTGATATTGACACTGACTCCGCCTTAAGCGCCGATGGACCAAACAACTTCTCATCCAGTGCAAATCCCTTATCAAGTCTACATCATGGTCCGGATTCTCCAGCGAGCGCTTCACAATCGGATATATTACTCGGTGATATGGAGTCTAATTTTGAATTGATTCGAGATCAAATGCGTCGAATGGAAGAACGTGTAGAAGGTCTAAAAATCAATAGAAATTCTGAAAGTGAAACACGTCTAGATCGTTTACGTGAAGAGAATGCTCGTTTAACTGCACAAATCACTGTTTTGGAAGAACGTCTTAAAGAAGCCGATGCAAGATCAAGTCGTGCATTAGAA ] [+] EMBL CD125509 [ TATCTAGGAATTTAGATGGGCAAAACGCATCCGTAAGGTCGAGCTTCCTTTCAGATGGTTTGGAGAACAAGACCGATGATAGTGGTGTGCATATGCACGATCCAACTTTATTTGATATTGACACTGACTCCGCCTTAAGCGCCGATGGACCAAACAACTTCTCATCCAGTGCAAATCCCTTATCAAGTCTACATCATGGTCCGGATTCTCCAGCGAGCGCTTCACAATCGGATATATTACTCGGTGATATGGAGTCTAATTCTGAATTGATTCGAGATCAAATGCGTCGAATGGAAGAACGTGTAGAAGGTCTAAAAATCAATAGAAATTCTGAAAGTGAAACACGTCTAGATCGTTTACGTGAGGAGAATGCTCGTTTAACTGCACAAATCACTGTTTTGGAAGAACGTCTTANAGAAGCCGATGCAAGATCAAGTCGTGCATTAGAAGCTGAAC ] [+] EMBL CD198142 [ GGATATATTACTCGGTGATATGGAGTCTAATTTTGAATTGATTCGAGATCAAATGCGTCGAATGGAAGAACGTGTATAATGTCTAAAGATCAATAAAAATTCTGAAAGTGAAACACGTCTAGATCGTTTACGTGAAGAGAATGCTCGTTTAACTGCACAAATCACTGCTGTGGAAGAACGTGTTAAAGAAGCCGATGCAAGATCAAGTCATGCATTATAAGCTGAACCACAACATGTGCAATCAATATTGTCACGCTCTTCACTAGAACATACTCATTAATCA ] [+] EMBL CD198137 [ GGATATATTACTCGGTGATATGGAGTCTAATTTTGAATTGATTCGAGATCAAATGCGTCGAATGGAAGAACGTGTAGAAGGTCTAAAAATCAATAGAAATTCTGAAAGTGAAACACGTCTAGATCGTTTACGTGAAGAGAATGCTCGTTTAACTGCACAAATCACTGTTTTGGAAGAACGTCTTAAAGAAGCCGATGCAAGATCAAGTCGTGCATTAGAAGCTGAACGACAACATATGCAATCAATTTTGTCACGCTCTTCGCGAGAACATACTCAAGAATCA ] [+] EMBL CD190680 [ GCTGAACGACAACATATGCAATCAATTTTGTCACGCTCTTCGCGAGAACATACTCAAGAATCAGAAACGTTACGTGCTCGGATTATTTCTTTAGAAAGTGAATGTTCTGAACTACGTGTTCAGTCAGCTCGTATCAAAGCAGACAACCAAGCGTATATTATCGTTATTGTTTCTAACACATTTAAATATAAAGAACATGTATAGTATCCAAACAAATTGTGTTTAGTATGCAAAAGTTTGTGGAGATTGCCTTCATTTTACATCATGAATTAACTTTAGTGAGACAATCACTAGAAACC] consensusID : consensus_9641#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 605 fasta sequence [ACCTCCCTGTAGGATCCCATTGTATATCACTAACAGTTGGATGTTCTCCCTTAGCTAAAATCTGACCATCATTTGCTGAAATGAATTCCAGTATCCCATCAGCACTTCTTAAACCTGCTGCTACAATAATGCCACCCTTAGATGACCAACGAAGATCATTGGTTCGAGGTGAGGCAAGATCAAGTCGTGCATTAGAAGCTGAACGACAACATATGCAATCAATTTTGTCACGCTCTTCGCGAGAACATACTCAAGAATCAGAAACGTTACGTGCTCGGATTATTTCTTTAGAAAGTGAATGTTCTGAACTACGTGTTCAGTCAGCTCGTATCAAAGCAGACAACCAAGCGTATATTATCGATCTTCGAAGAACTAATGAACAATTAACTGAATCACAAGAACAAGCACGTAGTTTTCAAGAAGAATTAAAATCATTAACAATTAAACATACTAGAGAAATAGAAGTTCTTCGAAAGGACCGTGATCATGCGGTACATGTATTAGAAGAGTTGAATGGTTCAATGGGTGGTAAACGAAGAAGTCGAGTCGGTTCAGGTTCGGGTACACTTACAGCAGCTGCAGCGAGCACTGGNTCAACTGAAGTA] [+] EMBL CD153298 [ACCTCCCTGTAGGATCCCATTGTATATCACTAACAGTTGGATGTTCTCCCTTAGCTAAAATCTGACCATCATTTGCTGAAATGAATTCCAGTATCCCATCAGCACTTCTTAAACCTGCTGCTACAATAATGCCACCCTTAGATGACCAACGAAGATCATTGGTTCGAGGTGAGGCAAGATCAAGTCGTGCATTAGAAGCTGAACGACAACATATGCAATCAATTTTGTCACGCTCTTCGCGAGAACATACTCAAGAATCAGAAACGTTACGTGCTCGGATTATTTCTTTAGAAAGTGAATGTTCTGAACTACGTGTTCAGTCAGCTCGTATCAAAGCAGACAACCAAGCGTATATTATCGATCTTCGAAGAACTAATGAACAATTAACTGAATCACAAGAACAAGCACGTAGTTTTCAAGAAGAATTAAAATCATTAACAATTAAACATACTAGAGAAATAGAAGTTCTTCGAAAGGACCGTGATCATGCG GTATTAGAAGAGTTGAATGGTTCAATGGGTGGTAAACGAAGAAGTCGAGTCGGTTCAGGTTCGGGTACACTTACAGCAGCTGCAGCGAGCACTGGNTCAACTGAAGTA] [+] EMBL CD181485 [ TATGCAATCAATTTTGTCACGCTCTTCGCGAGAACATACTCAAGAATCAGAAACGTTACGTGCTCGGATTATTTCTTTAGAAAGTGAATGTTCTGAACTACGTGTTCAGTCAGCTCGTATCAAAGCAGACAACCAAGCGTATATTATCGATCTTCGAAGAACTAATGAACAATTAACTGAATCACAAGAACAAGCACGTAGTTTTCAAGAAGAATTAAAATCATTAACAATTAAACATACTAGAGAAATAGAAGTTCTTCGAAAGGACCGTGATCATGCGGTACATGTATTAGAAGAGTTGAATGGTTCAATGGGTGGTAAACGAAGAAGTCGAGTCGGTTCAGGTTCGGGTACACTTAC ] [+] EMBL CD157032 [ TTGTCACGCTCTTCGCGAGAACATACTCAAGAATCAGAAACGTTACGTGCTCGGATTATTTCTTTAGAAAGTGAATGTTCTGAACTACGTGTTCAGTCAGCTCGTATCAAAGCAGACAACCAAGCGTATATTATCGATCTTCGAAGAACTAATGAACAATTAACTGAATCACAAGAACAAGCACGTAGTTTTCAAGAAGAATTAAAATCATTAACAATTAAACATACTAGAGAAATAGAAGTTCTTCGAAAGGACCGTGATCATGCGGTACATGTATTAGAAGAGTTGAATGGTTCAATGGGTGGTAAACG ] [+] EMBL CD180499 [ TTATCGATCTTCGAAGAACTAATGAACAATTAACTGAACCACAAGAACAAGCACGTAGTTTTCAAGAAGAATTAAAATCATTAACAATTAAACATACTAGAGAAATAGAAGTTCTTCGAAAGGACCGTGATCATGCGGTACATGTATTAGAAGAGTTGAATGGTTCAATGGGTGGTAAACGAAGAAGTCGAGTCG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9641#0 AAGGCAATGGAAATGACGGATGATCCTCTGGTTCTAGTTTTCAAAGCCTTAGACACAGAA 60 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 AATAAGGGATATATTACTGTAGAGCAATTTGTATCTACTTTTAAAGAGTTTTATAATTCA 120 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 AGTGGAGCTGATGGAGAAAGGAGATCATCACTTTCTTCAAATGACATCATGAAAGTAGTG 180 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 CAAACTTTAGATCCAGAAAATGATGGAATTATACATTATGAAGATTTTAAGAAGGCTTTT 240 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 GAGGGGAACATCAACTTTGATGAAGACAATACATCAAAGCATTCAAATTCTCTATCTAGG 300 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 AATTTAGATGGGCAAAACGCATCCGTAAGGTCGAGCTTCCTTTCAGATGGTTTGGAGAAC 360 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 AAGACCGATGATAGTGGTGTGCATATGCACGATCCAACTTTATTTGATATTGACACTGAC 420 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 TCCGCCTTAAGCGCCGATGGACCAAACAACTTCTCATCCAGTGCAAATCCCTTATCAAGT 480 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 CTACATCATGGTCCGGATTCTCCAGCGAGCGCTTCACAATCGGATATATTACTCGGTGAT 540 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 ATGGAGTCTAATTTTGAATTGATTCGAGATCAAATGC-GTCGAATGGAAGAACGTGTAGA 599 consensus_9641#1 ---ACCTCCCTGTAGGATCCCATTGTATATCACTAACAGTTGGATGTTCTCCCTTAGCTA 57 ** * ** *** * **** * ** * *** * * * consensus_9641#0 AGGTCTAAAAATCAATAGAAATTCTGAAAGTGAAACACGTCTAGATCGTTTACGTGAAGA 659 consensus_9641#1 AAATCTGACCATCATTTGCTGAAATGAAT-TCCAGTATCCCATCAGCACTT-CTTAAACC 115 * *** * **** * * **** * * * * * * ** * * ** consensus_9641#0 GAATGCTCGTTTAACTGCACAAATCACTGTTTTGGAAGAACGTCTTAAAGAAGCCGATGC 719 consensus_9641#1 TGCTGCTACAATAATGCCACCCTTAGATGACCAACGAAGATCATTGGTTCGAGGTGAGGC 175 **** *** *** * ** * * * ** ** ** consensus_9641#0 AAGATCAAGTCGTGCATTAGAAGCTGAACGACAACATATGCAATCAATTTTGTCACGCTC 779 consensus_9641#1 AAGATCAAGTCGTGCATTAGAAGCTGAACGACAACATATGCAATCAATTTTGTCACGCTC 235 ************************************************************ consensus_9641#0 TTCGCGAGAACATACTCAAGAATCAGAAACGTTACGTGCTCGGATTATTTCTTTAGAAAG 839 consensus_9641#1 TTCGCGAGAACATACTCAAGAATCAGAAACGTTACGTGCTCGGATTATTTCTTTAGAAAG 295 ************************************************************ consensus_9641#0 TGAATGTTCTGAACTACGTGTTCAGTCAGCTCGTATCAAAGCAGACAACCAAGCGTATAT 899 consensus_9641#1 TGAATGTTCTGAACTACGTGTTCAGTCAGCTCGTATCAAAGCAGACAACCAAGCGTATAT 355 ************************************************************ consensus_9641#0 TATCGTTATT---GTTTCTAAC--ACATTTAAATATA----AAGAACATGTA--TAGTAT 948 consensus_9641#1 TATCGATCTTCGAAGAACTAATGAACAATTAACTGAATCACAAGAACAAGCACGTAGTTT 415 ***** * ** **** *** **** * * ******* * * **** * consensus_9641#0 CCAAACA-------AATTGT-----GTTTAGTATGC---------AAAAGTTTGTGGAGA 987 consensus_9641#1 TCAAGAAGAATTAAAATCATTAACAATTAAACATACTAGAGAAATAGAAGTTCTTCGAAA 475 *** * *** * ** * ** * * ***** * ** * consensus_9641#0 TTGCCTTCATTTTACAT--CATGAATTA----ACTTTAGTGAGACAATCACTAGAAACC- 1040 consensus_9641#1 GGACCGTGATCATGCGGTACATGTATTAGAAGAGTTGAATGGTTCAATGGGTGGTAAACG 535 ** * ** * * **** **** * ** * ** **** * * ** * consensus_9641#0 ------------------------------------------------------------ consensus_9641#1 AAGAAGTCGAGTCGGTTCAGGTTCGGGTACACTTACAGCAGCTGCAGCGAGCACTGGNTC 595 consensus_9641#0 ---------- consensus_9641#1 AACTGAAGTA 605 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||