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Schistosoma mansoni
cluster # 9647 cluster # 9647       Sequences # 10       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9647#0 length = 1179 sequences # 9  
consensus_9647#1 length = 475 sequences # 1  

consensusID : consensus_9647#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1179
fasta sequence
                              [GCGATTCAACAAATTTATTGAACACAGAAAATAATGCGGAAAAATCAACTAAGAAGAATGCGATAGCAATATAATCGGAAACAGTCATTTCGAAATATCTGCGAAAAGCAATTACATGACTTACAAGATAATCCCTCAAGAGCATCTCGTAAAAAAACAAAACATTAAAGCAACACTATTAAAAAGTCCAGAAAAGGTTATATTTAAAAAACTCCAACAAAAGACAATCGAATTTTATTTTTCTCCTAACAAAATAAAAGTTGAAAGACAAATTACTTCAATTATGACGAATTAACTTTTAATAATTTGAAGAAAGCATGATCATTTGGTTCACGTCCAAGAAAATCTTTCAACATATCTGTAGCATCTTTAGAACCACCAGGACGAAGAATTTTTTCACGATAATCTCTTCCAACTGATTTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTGAACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCAAATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAATACCAATCCATTTTTTGCTTAAATTTGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAATGAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATTAGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGTCCATCAACATTCCATACCCAATTTTCTAGCATTTGTGATGGACACTCGACAAAATCTGTTTCTACAGCTGTACCACTAAAGAAAGCTGTTTCAGTATGTGAGCAAATCTGATGCATCAAATGACCAAACTCATGGAAAAATGTCTCAACTTCACTATGTAATAGAAAACCTTGACCAGTTTCTTTATCTGGTGCAGTAAAATTAGCAACCATTG-CTG-CTA-TAGCCAATTGACGTTCAGAGGCTAATGATGATGAGGAATGATCACGTTCATTCACCGTAGTATTATTGGAGTCCATTGATCCACGGCATCCTGGTTGTAAACCGAATACAGCTGCATGTCCATATTTACCTTCACGTGGATGCAGGTCAAGATAGAAATAACCTAACAAACTATTGGAT]

[+] EMBL AI977598             [GCGATTCAACAAATTTATTGAACACAGAAAATAATGCGGAAAAATCAACTAAGAAGAATGCGATAGCAATATAATCGGAAACAGTCATTTCGAAATATCTGCGAAAAGCAATTACATGACTTACAAGATAATCCCTCAAGAGCATCTCGTAAAAAAACAAAACATTAAAGCAACACTATTAAAAAGTCCAGAAAAGGTTATATTTAAAAAACTCCAACAAAAGACAATCGAATTTTATTTTTCTCCTAACAAAATAAAAGTTGAAAGACAAATTACTTCAATTATGACGAATTAACTTTTAATAATTTGAAGAAAGCATGATCATTTGGTTCACGTCCAAGAAAATCTTTCAACATATCTGTAGCATCTTTAGAACCACCAGGACGAAGAATTTTTTCACGATAATCTCTTCCAACTGATTTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTGAACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCAAATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BG932272             [                                   GCGGAAAAATCAACTAAGAAGAATGCGATAGCAATATAATCGGAAACAGTCATTTCGAAATATCTGCGAAAAGCAATTACATGACTTACAAGATAATCCCTCAAGAGCATCTCGTAAAAAAACAAAACATTAAAGCAACACTATTAAAAAGTCCAGAAAAGGTTATATTTAAAAAACTCCAACAAAAGACAATCGAATTTTATTTTTCTCCTAACAAAATAAAAGTTGAAAGACAAATTACTTCAATTATGACGAATTAACTTTTAATAATTTGAAGAAAGCATGATCATTTGGTTCACGTCCAAGAAAATCTTTCAACATATCTGTAGCATCTTTAGAACCACCTGGACGAAGAATTTTTTC CG TAAcagatcca                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD140718             [                                                                                                                                                                                                                                                                                                                         atatggGATCATTTGGTTCACGTCCAAGAAAATCTCTCAACATATCTGTAGCATCTTTAGAACCACCAGGACGAAGAATTTTTTCACGATAATCTCTTCCAACTGATTTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTGAACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCAAATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAATACCAATCCATTTTTTGCTTAAATTTGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAATGAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATTAGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGTCCATCAA                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD197539             [                                                                                                                                                                                                                                                                                                                                              GTCCAAGAAAATCTTTCAACATATCTGTAGCATCTTTAGAACCACCAGGACGAAGAATTTTTTCACGATAATCTCTTCCAACTGATTTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTGAACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCAAATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAATACCAATCCATTTTTTGCTTAAATTTGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAATGAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATTAGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCG                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD197297             [                                                                                                                                                                                                                                                                                                                                              GTCCAAGAAAATCTTTCAACATATCTGTAGCATCTTTAGAACCACCTGGACGAAGAATTTTTTCACGATAATCTCTTCCAACTGATTTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTGAACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCAAATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAATACCAATCCATTTTTTGCTTAAATTTGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAATGAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATTAGATTAGCTTACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGTCCAT                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD143032             [                                                                                                                                                                                                                                                                                                                                                                                                       TTTTTTCACGATAATCTCTTCCAACTGATTTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTGAACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCAAATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAATACCAATCCATTTTTTGCTTAAATTTGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAATGAGGCTAAGAGTATTTGTCGAGAATAANATAGACCAGCATTTGCTATACGTGAATTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD084175             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GCATAAAAGTACCTGGTGTCGGTTCAATACCAATCCATTTTTTGCTTAAATTCGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAATGAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATTAGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGTCCATCAACATTCCATACCCAATTTTCTAGCATTTGTGATGGACACTCGACAAAATCTGTTTCTACAGCTGTACCACTAAAGAAAGCTGTTTCAGTATGTGAGCAAATCTGATGCATCAAATGACCAAACTCATGGAAAAATGTCTCAACTTCACTATGTAATAGAAAACCTTGACCAGTTTCTTTATCTGGTGCAGTAAAATTAGCCACCATGGTCTGTCTACTAGCCAAgt                                                                                                                                                                          ]
[-] EMBL CD064537             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GTTGTATGAATGGCTTGATCGAATGAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATTAGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGTCCATCAACATTCCATACCCAATTTTCTAGCATTTGTGATGGACACTCGACAAAATCTGTTTCTACAGCTGTACTACTAAAGAAAGCTGTTTCAGTATGTGAGCAAATCTGATGCATCAAATGACCAAACTCATGGAAAAATGTCTCAACTTCACTATGTAATAGAAAACCTTGACCAGTTTCTTTATCTGGTGCAGTAAAATTAGCAACCATTG CTG CTA TAGCCAATTGACGTTCAGAGGCTAATG                                                                                                                                                        ]
[-] EMBL BG930452             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     taaTAACAAATC GGGCGAA  GGCTCATCATGTGTATCAAGTAGCGCCTTCAGTCCATCAACATTCCATACCCAATTTTCTAGCATTTGTGATGGACACTCGACANAATCTGTTTCTACAGCTGTACCACTAAAGAAAGCTGTTTCAGTATGTGAGCAAATCTGATGCATCAAATGACCAAACTCATGGAAAAATGTCTCAACTTCACTATGTAATAGAAAACCTTGACCAGTTTCTTTATCTGGTGCAGTAAAATTAGCAACCATTG CTG CTA TAGCCAATTGACGTTCAGAGGCTAATGATGATGAGGAATGATCACGTTCATTCACCGTAGTATTATTGGAGTCCATTGATCCACGGCATCCTGGTTGTAAACCGAATACAGCTGCATGTCCATATTTACCTTCACGTGGATGCAGGTCAAGATAGAAATAACCTAACAAACTATTGGAT]


>consensus_9647#0 GCGATTCAACAAATTTATTGAACACAGAAAATAATGCGGAAAAATCAACTAAGAAGAATG CGATAGCAATATAATCGGAAACAGTCATTTCGAAATATCTGCGAAAAGCAATTACATGAC TTACAAGATAATCCCTCAAGAGCATCTCGTAAAAAAACAAAACATTAAAGCAACACTATT AAAAAGTCCAGAAAAGGTTATATTTAAAAAACTCCAACAAAAGACAATCGAATTTTATTT TTCTCCTAACAAAATAAAAGTTGAAAGACAAATTACTTCAATTATGACGAATTAACTTTT AATAATTTGAAGAAAGCATGATCATTTGGTTCACGTCCAAGAAAATCTTTCAACATATCT GTAGCATCTTTAGAACCACCAGGACGAAGAATTTTTTCACGATAATCTCTTCCAACTGAT TTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTG AACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCA AATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAATACCAATCCATTTTTTGCTTAAA TTTGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAAT GAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATT AGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGT CCATCAACATTCCATACCCAATTTTCTAGCATTTGTGATGGACACTCGACAAAATCTGTT TCTACAGCTGTACCACTAAAGAAAGCTGTTTCAGTATGTGAGCAAATCTGATGCATCAAA TGACCAAACTCATGGAAAAATGTCTCAACTTCACTATGTAATAGAAAACCTTGACCAGTT TCTTTATCTGGTGCAGTAAAATTAGCAACCATTGCTGCTATAGCCAATTGACGTTCAGAG GCTAATGATGATGAGGAATGATCACGTTCATTCACCGTAGTATTATTGGAGTCCATTGAT CCACGGCATCCTGGTTGTAAACCGAATACAGCTGCATGTCCATATTTACCTTCACGTGGA TGCAGGTCAAGATAGAAATAACCTAACAAACTATTGGAT



consensusID : consensus_9647#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 475
fasta sequence
                              [TGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAATGAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATTAGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGTCCATCAACATTCCATACCCAATTTTCTAGCATTTGTGATGGACACTCGACAAAATCTGTTTCTACAGCTGTACCACTAAAGAAAGCTGTTTCAGTATGTGAGCAAATCTCTTCCAACTGATCTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTGAACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCAAATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAATACCGATCCATTTTTTTCT]

[-] EMBL CD185451             [TGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAATGAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATTAGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGTCCATCAACATTCCATACCCAATTTTCTAGCATTTGTGATGGACACTCGACAAAATCTGTTTCTACAGCTGTACCACTAAAGAAAGCTGTTTCAGTATGTGAGCAAATCTCTTCCAACTGATCTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTGAACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCAAATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAATACCGATCCATTTTTTTCT]


>consensus_9647#1 TGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAATGA GGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATTAG ATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGTCC ATCAACATTCCATACCCAATTTTCTAGCATTTGTGATGGACACTCGACAAAATCTGTTTC TACAGCTGTACCACTAAAGAAAGCTGTTTCAGTATGTGAGCAAATCTCTTCCAACTGATC TACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTGA ACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCAA ATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAATACCGATCCATTTTTTTCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9647#0      GCGATTCAACAAATTTATTGAACACAGAAAATAATGCGGAAAAATCAACTAAGAAGAATG 60
consensus_9647#1      ------------------------------------------------------------
                                                                                  

consensus_9647#0      CGATAGCAATATAATCGGAAACAGTCATTTCGAAATATCTGCGAAAAGCAATTACATGAC 120
consensus_9647#1      ------------------------------------------------------------
                                                                                  

consensus_9647#0      TTACAAGATAATCCCTCAAGAGCATCTCGTAAAAAAACAAAACATTAAAGCAACACTATT 180
consensus_9647#1      ------------------------------------------------------------
                                                                                  

consensus_9647#0      AAAAAGTCCAGAAAAGGTTATATTTAAAAAACTCCAACAAAAGACAATCGAATTTTATTT 240
consensus_9647#1      ------------------------------------------------------------
                                                                                  

consensus_9647#0      TTCTCCTAACAAAATAAAAGTTGAAAGACAAATTACTTCAATTATGACGAATTAACTTTT 300
consensus_9647#1      ------------------------------------------------------------
                                                                                  

consensus_9647#0      AATAATTTGAAGAAAGCATGATCATTTGGTTCACGTCCAAGAAAATCTTTCAACATATCT 360
consensus_9647#1      ------------------------------------------------------------
                                                                                  

consensus_9647#0      GTAGCATCTTTAGAACCACCAGGACGAAGAATTTTTTCACGATAATCTCTTCCAACTGAT 420
consensus_9647#1      ------------------------------------------------------------
                                                                                  

consensus_9647#0      TTACTAAGGCAACCACCATCCATAGCACATTGAAAACGTGATTCAAACATATCAGCACTG 480
consensus_9647#1      ------------------------------------------------------------
                                                                                  

consensus_9647#0      AACACTTCACTCCATAAATAGCTATAATAACGTGCGTCATATCCACCGGCTAAATGTCCA 540
consensus_9647#1      ------------------------------------------------------------
                                                                                  

consensus_9647#0      AATGATGCAGGCATAAAAGTACCTGGTGTCGGTTCAATACCAATCCATTTTTTGCTTAAA 600
consensus_9647#1      ------------------------------------------------------------
                                                                                  

consensus_9647#0      TTTGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAAT 660
consensus_9647#1      --TGTAAACGTGACTTGTGGATCATCTTCCCAGTTCGTTGTATGAATGGCTTGATCGAAT 58
                        **********************************************************

consensus_9647#0      GAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATT 720
consensus_9647#1      GAGGCTAAAAGTATTTGTCGAGAATAAAATAGACCAGCATTTGCTATACGTGAATTAATT 118
                      ************************************************************

consensus_9647#0      AGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGT 780
consensus_9647#1      AGATTAGCTAACAAATCTTTTGGAATCGGATCATCATTTGTATCAAGTAGCGCCTTCAGT 178
                      ************************************************************

consensus_9647#0      CCATCAACATTCCATACCCAATTTTCTAGCATTTGTGATGGACACTCGACAAAATCTGTT 840
consensus_9647#1      CCATCAACATTCCATACCCAATTTTCTAGCATTTGTGATGGACACTCGACAAAATCTGTT 238
                      ************************************************************

consensus_9647#0      TCTACAGCTGTACCACTAAAGAAAGCTGTTTCAGTATGTGAGCAAATCTGATGCATCAAA 900
consensus_9647#1      TCTACAGCTGTACCACTAAAGAAAGCTGTTTCAGTATGTGAGCAAATCTCTT---CCAAC 295
                      *************************************************  *    *** 

consensus_9647#0      TGACCAAACTCATGGAAAAATGTCTCAACTTCACTATGTAATAGAAAACCTTGACCAGTT 960
consensus_9647#1      TGATCTA--CTAAGGCAA------CCACCATCCATAGCACATTGAAAACGTGATTCAAAC 347
                      *** * *    * ** **       ** * **  **    ** ****** *    **   

consensus_9647#0      TCTTTATC-TGGTGCAGTAAAATTAGCAACCATTGCTGCTATAGCCAAT-TGACGTTCAG 1018
consensus_9647#1      ATATCAGCACTGAACACTTCACTCCATAA--ATAGCTATAATAACGTGCGTCATATCCAC 405
                         * * *   *  ** *  * *    **  ** ***   *** *     * *  * ** 

consensus_9647#0      AGGCTAATGATGATGAGGAATGATCACGTTCATTCACCGTAGTATTATTGGAGTCCATTG 1078
consensus_9647#1      CGGCTAAATGTC-CAAATGATGCAGGCATAAAAGTACC-TGGTGTCGGTTCAAT--ACCG 461
                       ******   *    *   ***    * *  *   *** * ** *   *  * *  *  *

consensus_9647#0      ATCCACGGCATCCTGGTTGTAAACCGAATACAGCTGCATGTCCATATTTACCTTCACGTG 1138
consensus_9647#1      ATCCATTTTTTTCT---------------------------------------------- 475
                      *****     * **                                              

consensus_9647#0      GATGCAGGTCAAGATAGAAATAACCTAACAAACTATTGGAT 1179
consensus_9647#1      -----------------------------------------
                                                               




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)