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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9654#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 983 fasta sequence
[CTCGCGGCCAANAATTCGGCACGAGGCACGGGAATTCCTACAACATTCATCCAATTGTATACCAGAATTCATAGTACATCTCATGAACGTTATCAATTTAACCTATGTCTCTGGATATATCATAGTATTGGCTCCGATGAACAAATGTGAACACGATCAAGATCTGAATAAACTAGCTTCAGAAGACCAAGACATTTTATTGACTAGCACAGATTCGATTTTACAACGTGATCAACAAAAAAGTGAATATAATTGTTGTAGGAAAGCTGTTTTAGTAGAAAATGAATTGCTTACTATTATGAAAGAGCATAAACCAATCTATTTCATTACTTTACGTTTAGGTTTGCCCATCTTTAACATGGAATTAAATCACGCCGTTTGTGCTCAAATATCTAGTCAGAATTTATTATCCACTAATAACCGCAATCATCTTGAAGCTACTAATCATCTACTTGTTGAAGAATTTACCAAATTTATTTTTAATGACTGTTCAGGTTTGCTACCCAACAAAAACCAATATAGTTATTCAACTTTTGTTACCAGTTCTGGTGGTAATTTTCCTGATACTTGGCCCCTGCCTACAAAAAATATGATGTGCGCCAATGGTGTTTTGTCATTTATTTAGGCTTTTTCACCACACCTAATAATAGTTAATCTGAAATTATTTTTGGTTGTAACGCGTACATATCTATTTTAGTCAAATAATTTAATCGTTTGATAAACACTCATTTTAATTTTTTGTGTGTTATTTGTTATTTACGTATCACCTAGGTTTTATCCTTTTTTATTTTTAATTTCTATCCATTCTTTCGTATTTTTATATCCAACCCTAAAAATATTTTGTTATACATGTGACAGCAGAAAATATCGTTCTATTTATTCTGTAATTGATTCTTGACAAAGTCATGTCCATATATCAGTGACTGCATACTGGATACATCAGTCATCAATGCAAACTTGGTAATTAGATTACAGGTAGTTTC]
[+] EMBL CD080205 [CTCGCGGCCAANAATTCGGCACGAGGCACGGGAATTCCTACAACATTCATCCAATTGTATACCAGAATTCATAGTACATCTCATGAACGTTATCAATTTAACCTATGTCTCTGGATATATCATAGTATTGGCTCCGATGAACAAATGTGAACACGATCAAGATCTGAATAAACTAGCTTCAGAAGACCAAGACATTTTATTGACTAGCACAGATTCGATTTTACAACGTGATCAACAAAAAAGTGAATATAATTGTTGTAGGAAAGCTGTTTTAGTAGAAAATGAATTGCTTACTATTATGAAAGAGCATAAACCAATCTATTTCATTACTTTACGTTTAGGTTTGCCCATCTTTAACATGGAATTAAATCACGCCGTTTGTGCTCAAATATCTAGTCAGAATTTATTATCCACTAATAACCGCAATCATCTTGAAGCTACTAATCATCTACTTGTTGAAGAATTTACCAAATTTATTTTTAATGACTGTTCAGGTTTGCTACCCAACAAAAACCAATATAGTTATTCAACTTTTGTTACCAGTTCTGGTGGTAATTTTCCTGATACTTGGCCCCTGCCTACAAAAAATATGATGTGCGCCAATGGTGTTTTGTCATTTATTTAGGCTTTTTCACCACACCTAATAATAGTTAATCTGAAATTATTTTTGGTTGTAACGCGTACATATCTATTTTAGTCAAATAATTTAATCGTTTGAT AACACTCATTNTAATTNTTTGTGTGTTATTTGTTATTTACGTATCACCTAGGTTTTATCCTTTTTTATTTTTAA TTCTAT CATTCTTTCG A TTTTATATCC ACCCT ANNATATTTTGTTAc ]
[+] EMBL CD123413 [ ATCCACTAATAACCGCAATCATCTTGAAGCTACTAATCATCTACTTGTTGAAGAATTTACCAAATTTATTTTTAATGACTGTTCAGGTTTGCTACCCAACAAAAACCAATATAGTTATTCAACTTTTGTTACCAGTTCTGGTGGTAATTTTCCTGATACTTGGCCCCTGCCTACAAAAAATATGATGTGCGCCAATGGTGTTTTGTCATTTATTTAGGCTTTTTCACCACACCTAATAATAGTTAATCTGAAATTATTTTTGGTTGTAACGCGTACATATCTATTTTAGTCAAATAATTTAATCGTTTGATAAACACTCATTTTAATTTTTTGTGTGTTATTTGTTATTTACGTATCACCTAGGTTTTATCCTTTTTTATTTTTAATTTCTATCCATTCTTTCGTATTTTTATATCCAACCCTAAAAATATTTTGTTATACATGTGACAGCAGAAAATATCGTTCTATTTATTCTGTAATTGATTCTTGACAAAGTCATGTCCATATATCAGTGACTGCATACTGGATACATCAGTCATCAATGCAAACTTGGTAATTAGATTACAGGTAGTTTC]
[+] EMBL CD123431 [ ATCCACTAATAACCGCAATCATCTTGAAGCTACTAATCATCTACTTGTTGAAGAATTTACCAAATTTATTTTTAATGACTGTTCAGGTTTGCTACCCAACAAAAACCAATATAGTTATTCAACTTTTGTTACCAGTTCTGGTGGTAATTTTCCTGATACTTGGCCCCTGCCTACAAAAAATATGATGTGCGCCAAAGGTGTTTTGTCATTTATTTAGGCTTTTTCACCACACCTAATAATAGTTAATCTGAAATTATTTTTGGTTGTAACGCGTACATATCTATTTTAGTC AATAATTTAATCGTTTGATAAACACTCATTTTAATTTTTTGTGTGTTATTTGTTATTTACGTATCACCTAGGTTTTATCCTTTTTTATTTTTAATTTCTATCCATTCTTTCGTATTTTTATATCCAACCCTAAAAATATTTTGTTATACATGTGACAGCAGAAAATATCGTTCTATTTATTCTGTAATTGATTCTTGACAAAGTCATGTCCATATATCAGTGACTGCATATTGGATACATCAGTCATCAATGCA ]
consensusID : consensus_9654#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 883 fasta sequence
[TTTGATTCGACTATCACGGCTTATCTCATGATGGGCAATTTATCACCCAACTTAA-AGCCTCATGCA-GTTACAATGTTTGAA-GTCGGGAAATTGTCAGATGATTCATTGAATTCTTTCGTATTTGAATTAAATCATCTTGTTCCTGTTTCAGAAGGTGAAGTCGGGGTTTATCGCGAGTATGCTCTGAATTTAAGAAAAACAATCCACTTTTTGCGTAGTCAGGCTTCATTAGACTCAACGGACTTCTGTGATGTTGATTTAATTAGAGGTGGTTCGTTGTTAAGTTTAGAGGCTGAAACACGCATACGAGTTTTGCGCAAAAATTATAATGTAGTTGTGAGCCTTATCCCCTCAACATATGAAGACCAGCAAGCTTCTGATTCCCAATGGCCACCACATTTAGGACCACCTATATCAGAAGCTAATTCTCCTTGGTTCGGCTTTCTTATTTCTTGTGTCGCAAGCCATACAATTCAAAGAAAACAGAATCCCAGTGTCGATGTATTGCCTACTCTTTTGACAACATGTGGTACTAGGATATCTAGGCTTCCATCACCTTTACGAGGAATTTCACGCTTCTGGCTTACTGCATGGGGTCATGACGCTGTGGTGGTAGATTCAACTAATTTTTTAACCACAGCAAACGATATGCTTCTATCATCGCCTGTACTTATCCAAGCCATCGAAAGTTATGAATTTGAAGAAAATTTGTCCCAGAGATACATACCTTTACCTATTTCCAAGGAATTCCTACAACATTCATCCAATTGTATACCAGAATTCATAGTACATCTCATGAACGTTATCAATTTAACCTATGTCTCTGGATATATCATAGTATTGGCTCCGATGAACAAATGTGAACACGATCAAGATCTGAATA]
[+] EMBL CD084278 [TTTGATTCGACTATCACGGCTTATCTCATGATGGGCAATTTATCACCCAACTTAACAGCCTCATGCACGTTACAATGTTTGAATGTCGGGAAATTGTCAGATGATTCATTGAATTCTTTCGTATTTGAATTAAATCATCTTGTTCCTGTTTCAGAAGGTGAAGTCGGGGTTTATCGCGAGTATGCTCTGAATTTAAGAAAAACAATCCACTTTTTGCGTAGTCAGGCTTCATTAGACTCAACGGACTTCTGTGATGTTGATTTAATTAGAGGTGGTTCGTTGTTAAGTTTAGAGGCTGAAACACGCATACGAGTTTTGCGCAAAAATTATAATGTAGTTGTGAGCCTTATCCCCTCAACATATGAAGACCAGCAAGCTTCTGATTCCCAATGGCCACCACATTTAGGACCACCTATATCAGAAGCTAATTCTCCTTGGTTCGGCTTTCTTATTTCTTGTGTCGCAAGCCATACAATTCAAAGAAAACAGAATCCCAGTGTCGATGTATTGCCTACTCTTTT ]
[+] EMBL CD112770 [ CAATTTATCACCCAACTTAA AGCCTCATGCA GTTACAATGTTTGAA GTCGGGAAATTGTCAGATGATTCATTGAATTCTTTCGTATTTGAATTAAATCATCTTGTTCCTGTTTCAGAAGGTGAAGTCGGGGTTTATCGCGAGTATGCTCTGAATTTAAGAAAAACAATCCACTTTTTGCGTAGTCAGGCTTCATTAGACTCAACGGACTTCTGTGATGTTGATTTAATTAGAGGTGGTTCGTTGTTAAGTTTAGAGGCTGAAACACGCATACGAGTTTTGCGCAAAAATTATAATGTAGTTGTGAGCCTTATCCCCTCAACATATGAAGACCAGCAAGCTTCTGATTCCCAATGGCCACCACATTTAGGACCACCTATATCAGAAGCTAATTCTCCTTGGTTCGGCTTTTTTATTTCTTGTGTCGCAAGCAATACAATTCAAAGAAAACAGAATCCCAGTGTCGATGTATTGCCTACTCTTTTG ]
[+] EMBL CD148351 [ CAATTTATCACCCAACTTAA AGCCTCATGCA GTTACAATGTTTGAG GTCGGGAAATTGTCAGATGATTCATTGAATTCTTTCGTATTTGAATTAAATCATCTTGTTCCTGTTTCAGAAGGTGAAGTCGGGGTTTATCGCGAGTATGCTCTGAATTTAAGAAAAACAATCCACTTTTTGCGTAGTCAGGCTTCATTAGACTCAACGGACTTCTGTGATGTTGATTTAATTAGAGGTGGTTCGTTGTTAAGTTTAGAGGCTGAAACACGCATACGAGTTTTGCGCAAAAATTATAATGTAGTTGTGAGCCTTATCCCCTCAACATATGAAGACCGGCAAGCTTCTGATTCCCAATGGCCACCACTTTTAGGACCACCTATATCAGAAGCTAATTC ]
[+] EMBL CD148297 [ CAATTTATCACCCAACTTAA AGCCTCATGCA GTTACAATGTTNGAA GNCGGGAAATTGTCAGATGATTCATTGAATTCTTTCGTATTTGAATTAAATCATCTTGTTCCTGTTTCAGAAGGGGAGTTCTGGGTTTATCGCGAGTATGCTCTGAATTagac ]
[-] EMBL CD148281 [ AATTTATCACCCAACTTAA AGCCTCATGCA GTTACAATGTTTGAA GTCGGGAGATTGTCAGATGATTCATTGAATTCTTTCGTATTTGAGTTAAATCATCTTGTTCCTGTTTCAGAAGGTGAAGTCGGGGTTTATCGCGAGTATGCTCTGAATTTAAGAAAAACAATCCACTTTTTGCGTAGTCAGGCTTCATTAGACTCAACGGACTTCTGTGATGTTGATTTAATTAGAGGTGGTTCGTTGTTAAGTTTAGAGGCTGAAACACGCATACGAGTTTTGCGCAAAAATTATAATGTAGTTGTGAGCCTTATCCCCTCAACATATGAAGGCCAGCAAGCTTCTGATTCCCAATGGCCACCACTTTTAGGACCACCTATATCAGAAGCTAATTCT ]
[-] EMBL CD132137 [ CAATTCAAAGAAAACAGAATCCCAGTGTCGATGTATTGCCTACTCTTTTGACAACATGTGGTACTAGGATATCTAGGCTTCCATCACCTTTACGAGGAATTTCACGCTTCTGGCTTACTGCATGGGGTCATGACGCTGTGGTGGTAGATTCAACTAATTTTTTAACCACAGCAAACGATATGCTTCTATCATCGCCTGTACTTATCCAAGCCATCGAAAGTTATGAATTTGAAGAAAATTTGTCCCAGAGATACATACCTTTACCTATTTCCAAGGAATTCCTACAACATTCATCCAATTGTATACCAGAATTCATAGTACATCTCATGAACGTTATCAATTTAACCTATGTCTCTGGATATATCATAGTATTGGCTCCGATGAACAAATGTGAACACGATCAAGATCTGAATA]
consensusID : consensus_9654#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence
[ATCCACTAATAACCGCAATCATCTTGAAGCTACTAATCATCTACTTGTTGAAGAATTACCAAATTTATTTTAATGCGTGGGAGGTTTGNCACAAAAATNCTTGNNNNNNNNNACTTTGGTCCCAGTTGGGGGGATATTCGTTCAGCNCGGGNNNCCGTNNNNCAAAAAATATGATGTGCGCCAATGGTGTTTTGTCATTTATTTAGGCTTTTTCACCACACCTAATAATAGTTAATCTGAAATTATTTTTGGTTGTAACGCGTACATATCTATTNTAGTCAATAATTTAATCGTTTGATAAACACTCATTNTAATTTTTTGTGTGTTATTTGTTATTTACG]
[+] EMBL CD123411 [ATCCACTAATAACCGCAATCATCTTGAAGCTACTAATCATCTACTTGTTGAAGAATTACCAAATTTATTTTAATGCGTGGGAGGTTTGNCACAAAAATNCTTGNNNNNNNNNACTTTGGTCCCAGTTGGGGGGATATTCGTTCAGCNCGGGNNNCCGTNNNNCAAAAAATATGATGTGCGCCAATGGTGTTTTGTCATTTATTTAGGCTTTTTCACCACACCTAATAATAGTTAATCTGAAATTATTTTTGGTTGTAACGCGTACATATCTATTNTAGTCAATAATTTAATCGTTTGATAAACACTCATTNTAATTTTTTGTGTGTTATTTGTTATTTACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9654#0 CTCGCGGCCAANAATTCGGCACGAGGCACGGGAATTCCTACAACATTCATCCAATTGTAT 60
consensus_9654#2 ------------------------------------------------------------
consensus_9654#1 -------------------------------------------------------TTTGA 5
consensus_9654#0 ACCAGAATTCATAGTACATCTCATGAACGTTATCAATTTAACCTATGTCTCTGGATATAT 120
consensus_9654#2 ------------------------------------------------------------
consensus_9654#1 TTCGACTATCACGGCTTATCTCATGATGGGCAATTTATCACCCAACTTAAAGCCTCATGC 65
consensus_9654#0 CATAGTATTGGCTCCGATGAACAAATGTGAACACGATCAAGATCTGAATAAACTAGCTTC 180
consensus_9654#2 ------------------------------------------------------------
consensus_9654#1 AGTTACAATGTTTGAAGTCGGGAAATTGTCAGATGATTCA---TTGAATTCTTTCGTATT 122
consensus_9654#0 AGAAGACCAAGACATTTTATTGACTAGCACAGATTCGATTTTACAACGTGATCAACAAAA 240
consensus_9654#2 ------------------------------------------------------------
consensus_9654#1 TGAA--TTAAATCATCTTGTTC-CTGTTTCAGA----AGGTGAAGTCGGGGTTTATCGCG 175
consensus_9654#0 AAGTGAATATAATTGTTGTAGGAAAGCTGTTTTAGTAGAAAATGAATTGCTTACTATTAT 300
consensus_9654#2 ------------------------------------------------------------
consensus_9654#1 AGTATGCTCTGAATTTAAGAAAAACAATCCACTTTTTGCGTAGTCAGGCTTCATTAGACT 235
consensus_9654#0 GAAAGAGCATAAACCAATCTATTTCATTACTTTACGTTTAGGTTTGCCCATCTTTAACAT 360
consensus_9654#2 ------------------------------------------------------------
consensus_9654#1 CAACGGACTTCTGTGATGTTGATTTAATTAGAGGTGGTTCG--TTGTTAAGTTTAGAGGC 293
consensus_9654#0 GGAATTAAATCACGCCGTTTGTGCTCAAATATCTAGTCAGAATTTATTATCCACTAATAA 420
consensus_9654#2 ------------------------------------------------ATCCACTAATAA 12
consensus_9654#1 TGAAACACG-CATACGAGTTTTGCGCAAAAAT-TATAATGTAGTTGTGAGC--CTTATCC 349
* * ** **
consensus_9654#0 CCGCAATCATCTTGAAGCTACTAATCATCTACTTGTTGAAGAATTTACCAAATTTATTTT 480
consensus_9654#2 CCGCAATCATCTTGAAGCTACTAATCATCTACTTGTTGAAGAATT-ACCAAATTTATTTT 71
consensus_9654#1 CCTCAA-CATATGAAGACCAGCAAGCTTCTGATTCCCAATGGCC--ACCACATTTAGGAC 406
** *** *** * * * * ** * *** ** * * **** *****
consensus_9654#0 TAATGACTGTTCAGGTTTGCTACCCAACAAAAACCAATATAGTTATTCAACTTTTGTTAC 540
consensus_9654#2 -AATGCGTGGG-AGGTTTGNC-----ACAAAAATNCTTGNNNNNNNNNA--CTTTGGTCC 122
consensus_9654#1 CACCTATATCAGAAGCTAATT---CTCCTTGGTTCGGCTTTCTTATTTC--TTGTGTCGC 461
* * * * * * ** *
consensus_9654#0 CAGTTCTGGTGGTAATTTTCCTGATACTTGGCCCCTGCCTACAAAAAATATGATGTGCGC 600
consensus_9654#2 CAGTTGGGGGGATA-TTCGTTCAGCNCGGGNNNCCGTNNNNCAAAAAATATGATGTGCGC 181
consensus_9654#1 AAGCCAT----ACAATTCAAAGAAAACAGAATCCCAGTGTCGATGTATTGCCTACTCTTT 517
** * ** * ** * * * *
consensus_9654#0 CAATGGTGTTTTGTCATT---TATTTAGGCTTTTTCACCACACCTAATAATAGTTAATCT 657
consensus_9654#2 CAATGGTGTTTTGTCATT---TATTTAGGCTTTTTCACCACACCTAATAATAGTTAATCT 238
consensus_9654#1 TGACAACATGTGGTACTAGGATATCTAGGCTTC--CATCACCTTTACGAGGAATT---TC 572
* * * ** * *** ******* ** *** ** * * **
consensus_9654#0 GAAATTATTTTTGGTTGTAACGCGT-ACATATCTATTTTAGTCAAATAATTTAATCGTTT 716
consensus_9654#2 GAAATTATTTTTGGTTGTAACGCGT-ACATATCTATTNTAGTCAA-TAATTTAATCGTTT 296
consensus_9654#1 ACGCTTCTGGCTTACTGCATGGGGTCATGACGCTGTGGTGGTAGATTCAACTAATTTTTT 632
** * * ** * * ** * ** * * ** * * * **** ***
consensus_9654#0 GATAAACACTCATTTTAATTTTTTGTGTGTTATTTGTTATTTACGTATCACCTAGGTTTT 776
consensus_9654#2 GATAAACACTCATTNTAATTTTTTGTGTGTTATTTGTTATTTACG--------------- 341
consensus_9654#1 AACCACAGCAAACGATATGCTTCTAT-CATCGCCTGTACTTATCCAAGCCATCGAAAGTT 691
* * * * ** ** * * * *** ** *
consensus_9654#0 ATCCTTTTTTATTTTTAATTTCTATCCATTCTTTCGTATTTTTATATCCAACCCTAAAAA 836
consensus_9654#2 ------------------------------------------------------------
consensus_9654#1 ATGAATTTGAA---GAAAATTTGTCCCAGAGATACATACCTTTACCTATTTCCAAGGAAT 748
consensus_9654#0 TATTTTGTTATACATGTGACAGCAGAAAATATCGTTCTATTTATTCTGTAATTGATTCTT 896
consensus_9654#2 ------------------------------------------------------------
consensus_9654#1 TCCTACAACATTCATCCAATTGTATACCAGAATTCATAGTACATCTCATGAACGTTATCA 808
consensus_9654#0 GACAAAGTCATGTCCATATATCAGTGACTGCATACTGGATACATCAGTCATCAATGCAAA 956
consensus_9654#2 ------------------------------------------------------------
consensus_9654#1 ATTTAACCTATGTCTCTGGATATATCATAGTATTGGCTCCGATGAACAAATGTGAACACG 868
consensus_9654#0 CTTGGTAATTAGATTACAGGTAGTTTC 983
consensus_9654#2 ---------------------------
consensus_9654#1 ATCAAGATCTGAATA------------ 883
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||