cluster # 9655

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 9655 cluster # 9655 Sequences # 10 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9655#0 length = 867 sequences # 5

consensus_9655#1 length = 564 sequences # 4
consensus_9655#2 length = 199 sequences # 1

consensusID : consensus_9655#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 867
fasta sequence

                              [ATTCATCGACGATAACAAATTGTTACCTTCCCGTATTAACACTGTTGGGGTCCCGTTTGACAATACATTTGATAACTACAATAGCCTTCACAATCTAAGCAAGCCGTCTGTTTTGGTTGAATATTATCAGCTCCTAGTAAAGTTAGTGCATGATCGTAACAGATGTGCTTCGCACCTAAAAACCCTAATCGGGATTCAAAGTAACCTGTTTTGATTTTAAATTAGTCTCTTTTAGATAAATTTGGAAAGGCTTTCAGTACAAGATGCATAGGTTGCTTGTTTTAACTACTTATTTTATATGCTTTTAGACTTTCATATGGTATCGAAAGATCACAAAAGGTCACGGAGGTCTTTAATAAATCACCTGCATCAGCATTC-AAAGCTACAGTTCCATATTCTTGCTCACCGTACTGCAATTTATTGTTTGGAGTTTGATAGGCGTGGAAATTACGTTTTCACAGGATCCGATGATTACACCATTAAAGTCTGGTCTGTAAAAGGATCAAGTACACCATCGTGTACCTTACGCCATACTCTTCGAGGTCATGTTGCTGAAATAATTGAACTAACTATATCTATCGATAACCATTTACTCGCATCAATAGATTCAAACTGCTGCCTAGTAATATGGTGCCTGAAAACTGGACAACCAGTAGTAGCTGTTCGTGGATCACGTAATAACCGGGTACTGTCTGGTCTCGCTTTCCTCAATGTACCTAAAATAGTGAGGCCAGTGAACACAGATTCATCAAATTCGAATGATGTTAATCATCCTTCTGGTATGCTCATAGTATCATCCTTTGATGGTTATCTTCACATCATACCTTATATTCACACCGTCCATCATGCTCATCGTGAGGATGAGTT]

[+] EMBL CD069325             [ATTCATCGACGATAACAAATTGTTACCTTCCCGTATTAACACTGTTGGGGTCCCGTTTGACAATACATTTGATAACTACAATAGCCTTCACAATCTAAGCAAGCCGTCTGTTTTGGTTGAATATTATCAGCTCCTAGTAAAGTTAGTGCATGATCGTAACAGATGTGCTTCGCACCTAAAAACCCTAATCGGGATTCAAAGTAACCTGTTTTGATTTTAAATTAGTCTCTTTTAGATAAATTTGGAAAGGCTTTCAGTACAAGATGCATAGGTTGCTTGTTTTAACTACTTATTTTATATGCTTTTAGACTTTCATATGGTATCGAAAGATCACAAAAGGTCACGGAGGTCTTTAATAAATCACCTGCATCAGCATTC AAAGCTGCAGTTCCATATTCTTGCTCACCGTACTGCAATTTATTGCTTGGAGTTTGATAAGCGTGGGAATTACGTTTTCACAGGATCCGATGATTACACCATTAAAGTCTGGTCTGTAAAAGGTTCAAGTACACCATCATGTAACTTACGCCATACTCTTCGAGGTCATGTTGCTGAAATAATTGAA TAACTGT TTTTTCGATt                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD117580             [                                                                                                                                                                                                                                                                                                                                                              CTTTAATAAATCA CTGCAACAGCATTCAAAAGCGACGGTTCCATATTCTTGCTCACCGTACTGCAATTTATTGTTTAAAGTTTAATAGGCGTGGAAATTACGTTTTCACAGGATCCGAAGATAACACCATTAAAGTCTGGTCTGTAAAAGGATCAAGTACACCATCGTGTACCTTACGCCATACTATTGGAGGTCATGTTGCTGAAATAATTGAACTAACTATATCTATCGATAACCATTTACTCGCATCAATAGATTCAAACTGCTGCCTAGTAATATGGTGCCTGAAAACTGGACAACCAGTAGTAGCTGTTCGTGGATCACGTAATAACCGGGTACTGTCTGGTCTCGCTTTCCTCAATGTACCTAAAATAGTGAGGCCAGTGAACACAGATTCATCAAATTCGAATGATGTTAATCATCCTTCTGGTATGCTCATAGTATCATCCTTTGATGGTTATCTTCACATCATACCTTATATTCACACCGTCCATCATGCTCATCGTGAGGATGAGTT]
[+] EMBL CD116785             [                                                                                                                                                                                                                                                                                                                                                              CTTTAATAAATCACTTGCATCAGCATTC AAAGCTACAGTTCCATATTCTTGCTCACCGTACTGCAATTTATTGTTTGGAGTTTGATAGGCGTGGAAATTACGTTTTCACAGGATCCGATGATTACACCATTAAAGTCTGGTCTGTAAAAGGATCAAGTACACCATCGTGTACCTTACGCCATACTCTTCGAGGTCATGTTGCTGAAATAATTGAACTAACTATATCTATCGATAACCATTTACTCGCATCAATAGATTCAAACTGCTGCCTAGTAATATGGTGCCTGAAAACTGGACAACCAGTAGTAGCTGTTCGTGGATCACGTAATAACCGGGTACTGTCTGGTCTCGCTTTCCTCAATGTACCTAAAATAGTGAGGCCAGTGAACACAGATTCATCAAATTCGAATGATGTTAATCATCCTTCTGGTATGCTCATAGTATCATCCTTTGGTGGTTATCTTCACATCATACCTTATATTCACACCGTCCATCATGCTCATCGTGAGGATGAGT ]
[-] EMBL CD117508             [                                                                                                                                                                                                                                                                                                                                                               TTTAATAAATCACGGGCATCGGCATTC AAAGATACAGTTCCATATTCTTGCTCGCCGTACTGCAATTTATTGTTTGGAGTTTGATAGGCGTGGAAATTACGTTTTCACAGGATCCGATGATTACACCATTAAAGTCTGGTCTGTAAAAGGATCAAGTACACCATCGTGTACCTTACGCCATACTCTTCGAGGTCATGTTGCTGAAATAATTGAACTAACTATATCTATCGATAACCATTTACTCGCATCAATAGATTCAAACTGCTGCCTAGTAATATGGTGCCTGAAAACTGGACAACCAGTAGTAGCTGTTCGTGGATCACGTAATAACCGGGTACTGTCTGGTCTCGCTTTCCTCAATGTACCTAAAATAGTGAGGCCAGTGAACACAGATTCATCAAATTCGAATGATGTTAATCATCCTTCTGGTATGCTCATAGTATCATCCTTTGATGGTTATCTTCACATCATACCTTATATTCACACCGTCCATCATGCTCATCGTGAGGATGAGTT]
[+] EMBL CD147593             [                                                                                                                                                                                                                                                                                                                                                                TTAATAAATCACCTGCATCAGCATTC AAAGCTGCAGTTCCATATTCTTGCTCACCGTACTGCAATTTATTGCTTGGAGTTTGATAAGCGTGGGAATTACGTTTTCACAGGATCCGATGATTACACCATTAAAGTCTGGTCTGTAAAAGGTTCAAGTACACCATCATGTACCTTACGCCATACTCTTCGAGGTCATGTTGCTGAAATAATTGAACTAACTGTATCTATCGATAACCATTTACTCGCATCAATAGATTCGAACTGCTGCCTAGTAATATGGTGCCTGAAAACTGGACAACCAGTAGTAGCTGTTCGTGGATCACGTAATAACC                                                                                                                                                                                        ]




>consensus_9655#0
ATTCATCGACGATAACAAATTGTTACCTTCCCGTATTAACACTGTTGGGGTCCCGTTTGA
CAATACATTTGATAACTACAATAGCCTTCACAATCTAAGCAAGCCGTCTGTTTTGGTTGA
ATATTATCAGCTCCTAGTAAAGTTAGTGCATGATCGTAACAGATGTGCTTCGCACCTAAA
AACCCTAATCGGGATTCAAAGTAACCTGTTTTGATTTTAAATTAGTCTCTTTTAGATAAA
TTTGGAAAGGCTTTCAGTACAAGATGCATAGGTTGCTTGTTTTAACTACTTATTTTATAT
GCTTTTAGACTTTCATATGGTATCGAAAGATCACAAAAGGTCACGGAGGTCTTTAATAAA
TCACCTGCATCAGCATTCAAAGCTACAGTTCCATATTCTTGCTCACCGTACTGCAATTTA
TTGTTTGGAGTTTGATAGGCGTGGAAATTACGTTTTCACAGGATCCGATGATTACACCAT
TAAAGTCTGGTCTGTAAAAGGATCAAGTACACCATCGTGTACCTTACGCCATACTCTTCG
AGGTCATGTTGCTGAAATAATTGAACTAACTATATCTATCGATAACCATTTACTCGCATC
AATAGATTCAAACTGCTGCCTAGTAATATGGTGCCTGAAAACTGGACAACCAGTAGTAGC
TGTTCGTGGATCACGTAATAACCGGGTACTGTCTGGTCTCGCTTTCCTCAATGTACCTAA
AATAGTGAGGCCAGTGAACACAGATTCATCAAATTCGAATGATGTTAATCATCCTTCTGG
TATGCTCATAGTATCATCCTTTGATGGTTATCTTCACATCATACCTTATATTCACACCGT
CCATCATGCTCATCGTGAGGATGAGTT

consensusID : consensus_9655#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 564
fasta sequence

                              [CCAGTACTGAGGGTTGCGCGTGATGGATATAAAAGCCGAGTTGTTTTTCTTGGTAGTGAAGCTGTTAGAAGATGAGGGGTGTGTTACTGCGGCTGAGTCTTTG-AAAAAATTCATCGACGATAACAAATTGTTACCTTCCCGTATTAACACTGCTGGGGTCCCGTTTGACAATACATTTGATAACTACAATAGCCTTCATAATCTAAGCAAGCCATCTGTTTTGGTTGAATATTATCAACTCCTAGTAAAGTTAGTTCATGATCGTAACAGATGTGCTTCGCACCTAAAAACCCTAATCGGAATTCAAAATAAATTTGGAAAGGCTTTCAGTACAAGATGCATAGACTTTCATATGGTATCGAAAGATCACAAAAGGTCACGGAGGTCTTTAATAAATCACTTGCATCAGCATTCAAAGCTACAGTTCCATATTCTTGCTCACCGTACTGCAATTTATTGTTTGGAGTTTGATAGGCGTGGAAATTACGTTTTCACAGGATCCGATGATTACACCATTAAAGTCTGGTCTGTAAAAGGATCAAGTACACCATCGTGTACCTTACG]

[+] EMBL CD194389             [CCAGTACTGAGGGTTGCGCGTGATGGATATAAAAGCCGAGTTGTTTTTCTTGGTAGTGAAGCTGTTAGAAGATGAGGGGTGTGTTACTGCGGCTGAGTCTTTGAAAAAAATTCATCGACGATAACAAATTGTTACCTTCCCGTATTTACACTGCTGGGGTCCCGTTTGACAATACATTTGATAACTACAATAGCCTTCATAATCTAAGCAAGCCATCTGTTTTGGTTGAATATTATCAACTCCTAGTAAAGTTAGTTCATGATCGTAACAGATGTGCTTCGCACCTAAAAACCCTAATCGGAATTCAAAATAAATTTGGAAAGGCTTTCAGTACAAGATGCATAGACTTTCATATGGTATCGAAAGATCACAAAAGGGCACGGAGGTC                                                                                                                                                                                 ]
[-] EMBL CD097517             [                                                               GTTAGAAGATGAGGGGTGTGTTACTGCGGCTGAGTCTTTG AAAAAATTCATCGACGATAACAAATTGTTACCTTCCCGTATTAACACTGCTGGGGTCCCGTTTGACAATACATTTGATAACTACAATAGCCTTCATAATCTAAGCAAGCCATCTGTTTTGGTTGAATATTATCAACTCCTAGTAAAGTTAATTCATGATCGTAACAGATGTGCTTCGCACCTAAAAACCCTAATCGGAATTCAAAATAAATTTGGAAAGGCTTTCAGTACAAGATGCATAGACTTTCATATGGTATCGAAAGACCACAAAAGGTCACGGAGGTCTTTAATAAATCACTTGCATCAGCATTCAAAGCTACAGTTCCATATTCTTGCTCACCGTACTGCAATTTATTGTTTGGAGTTTGATAGGCGTGGAAATTACGTTTTCACAGGATCCGATGATTACACCATTAAAGTCTGGTCTGTAAAAGGATCAAGTACACCATCGTGTACCTTACG]
[+] EMBL CD181600             [                                                                                GTGTTACTGCTGCTGAGTCTTTG AAAAGATTCATCGACGATAACAAATTGTTACCTTCCCGTATTAACACTGTTGGGGTCCCGTTTGACAATACATTTGATAACTACAATAGCCTTCACAATCTAAGCAAGCCGTCTGTTTTGGTTGAATATTATCAGCTCCTAGTAAAGTTAGTGCATGATCGTAACAGATGTGCTTCGCACCTAAAAACCCTAATCGGGATTCAAAATAAATTTGGAAAGGCTTTCAGTACAAGATGCATAGACTTTCATATGGTATCGAAAGATCACAAAAGGTCACGGAGGTCTTTAATAA                                                                                                                                                                         ]
[+] EMBL CD137058             [                                                                                                                                                                                               cnCCTTCATAATCTAAGCAAGCCATCTGTTTTGGTTGAATATTATCAACTCCTAGTAAAGTTAGTTCATGATCGTAACAGATGTGCTTCGCACCTAAAAACCCTAATCGGAATTCAAAATAAATTTGGAAAGGCTTTCAGTACAAGATGCATAGACTTTCATATGGTATCGAAAGATCACAAAAGGTCACGGAGGT                                                                                                                                                                                  ]




>consensus_9655#1
CCAGTACTGAGGGTTGCGCGTGATGGATATAAAAGCCGAGTTGTTTTTCTTGGTAGTGAA
GCTGTTAGAAGATGAGGGGTGTGTTACTGCGGCTGAGTCTTTGAAAAAATTCATCGACGA
TAACAAATTGTTACCTTCCCGTATTAACACTGCTGGGGTCCCGTTTGACAATACATTTGA
TAACTACAATAGCCTTCATAATCTAAGCAAGCCATCTGTTTTGGTTGAATATTATCAACT
CCTAGTAAAGTTAGTTCATGATCGTAACAGATGTGCTTCGCACCTAAAAACCCTAATCGG
AATTCAAAATAAATTTGGAAAGGCTTTCAGTACAAGATGCATAGACTTTCATATGGTATC
GAAAGATCACAAAAGGTCACGGAGGTCTTTAATAAATCACTTGCATCAGCATTCAAAGCT
ACAGTTCCATATTCTTGCTCACCGTACTGCAATTTATTGTTTGGAGTTTGATAGGCGTGG
AAATTACGTTTTCACAGGATCCGATGATTACACCATTAAAGTCTGGTCTGTAAAAGGATC
AAGTACACCATCGTGTACCTTACG

consensusID : consensus_9655#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 199
fasta sequence

                              [YTTGGTTGAATATTATCAGCTCCTAGTAAAGTTAGTGCATGATCGTAACACACGTGCTTCGCACTAAMCTATCACAAAATAAATTTCGGCAAAGGCTTTCCAGTACAAGATGCATAGACTTTCATATGGTATCGAAAGATCACAAAAGGTCACGGAGGTCTTTAATAAATCAGCCTGCATCAGCATTCAAAGCTGCAGT]

[+] EMBL BE519460             [YTTGGTTGAATATTATCAGCTCCTAGTAAAGTTAGTGCATGATCGTAACACACGTGCTTCGCACTAAMCTATCACAAAATAAATTTCGGCAAAGGCTTTCCAGTACAAGATGCATAGACTTTCATATGGTATCGAAAGATCACAAAAGGTCACGGAGGTCTTTAATAAATCAGCCTGCATCAGCATTCAAAGCTGCAGT]




>consensus_9655#2
YTTGGTTGAATATTATCAGCTCCTAGTAAAGTTAGTGCATGATCGTAACACACGTGCTTC
GCACTAAMCTATCACAAAATAAATTTCGGCAAAGGCTTTCCAGTACAAGATGCATAGACT
TTCATATGGTATCGAAAGATCACAAAAGGTCACGGAGGTCTTTAATAAATCAGCCTGCAT
CAGCATTCAAAGCTGCAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9655#0      ------------------------------------------------------------
consensus_9655#2      ------------------------------------------------------------
consensus_9655#1      CCAGTACTGAGGGTTGCGCGTGATGGATATAAAAGCCGAGTTGTTTTTCTTGGTAGTGAA 60
                                                                                  

consensus_9655#0      ------------------------------------------------ATTCATCGACGA 12
consensus_9655#2      ------------------------------------------------------------
consensus_9655#1      GCTGTTAGAAGATGAGGGGTGTGTTACTGCGGCTGAGTCTTTGAAAAAATTCATCGACGA 120
                                                                                  

consensus_9655#0      TAACAAATTGTTACCTTCCCGTATTAACACTGTTGGGGTCCCGTTTGACAATACATTTGA 72
consensus_9655#2      ------------------------------------------------------------
consensus_9655#1      TAACAAATTGTTACCTTCCCGTATTAACACTGCTGGGGTCCCGTTTGACAATACATTTGA 180
                                                                                  

consensus_9655#0      TAACTACAATAGCCTTCACAATCTAAGCAAGCCGTCTGTTTTGGTTGAATATTATCAGCT 132
consensus_9655#2      ---------------------------------------YTTGGTTGAATATTATCAGCT 21
consensus_9655#1      TAACTACAATAGCCTTCATAATCTAAGCAAGCCATCTGTTTTGGTTGAATATTATCAACT 240
                                                              ***************** **

consensus_9655#0      CCTAGTAAAGTTAGTGCATGATCGTAACAGATGTGCTTCGCACCTAAAAACCCTAATCGG 192
consensus_9655#2      CCTAGTAAAGTTAGTGCATGATCGTAACACACGTGCTTCGCACT---AAMCTATCA---- 74
consensus_9655#1      CCTAGTAAAGTTAGTTCATGATCGTAACAGATGTGCTTCGCACCTAAAAACCCTAATCGG 300
                      *************** ************* * ***********    ** *  * *    

consensus_9655#0      GATTCAAAGTAACCTGTTTTGATTTTAAATTAGTCTCTTTTAGATAAATTTGGAAAGGCT 252
consensus_9655#2      ----CAAAATAA---ATTTCGGC-----------------------------AAAGGCTT 98
consensus_9655#1      AATTCAAAATAA----ATTTG-------------------------------GAAAGGCT 325
                          **** ***     ** *                                ** *  *

consensus_9655#0      TTCAGTACAAGATGCATAGGTTGCTTGTTTTAACTACTTATTTTATATGCTTTTAGACTT 312
consensus_9655#2      TCCAGTACAAGATGCATAG-------------------------------------ACTT 121
consensus_9655#1      TTCAGTACAAGATGCATAG-------------------------------------ACTT 348
                      * *****************                                     ****

consensus_9655#0      TCATATGGTATCGAAAGATCACAAAAGGTCACGGAGGTCTTTAATAAATCA-CCTGCATC 371
consensus_9655#2      TCATATGGTATCGAAAGATCACAAAAGGTCACGGAGGTCTTTAATAAATCAGCCTGCATC 181
consensus_9655#1      TCATATGGTATCGAAAGATCACAAAAGGTCACGGAGGTCTTTAATAAATCA-CTTGCATC 407
                      *************************************************** * ******

consensus_9655#0      AGCATTCAAAGCTACAGTTCCATATTCTTGCTCACCGTACTGCAATTTATTGTTTGGAGT 431
consensus_9655#2      AGCATTCAAAGCTGCAGT------------------------------------------ 199
consensus_9655#1      AGCATTCAAAGCTACAGTTCCATATTCTTGCTCACCGTACTGCAATTTATTGTTTGGAGT 467
                      ************* ****                                          

consensus_9655#0      TTGATAGGCGTGGAAATTACGTTTTCACAGGATCCGATGATTACACCATTAAAGTCTGGT 491
consensus_9655#2      ------------------------------------------------------------
consensus_9655#1      TTGATAGGCGTGGAAATTACGTTTTCACAGGATCCGATGATTACACCATTAAAGTCTGGT 527
                                                                                  

consensus_9655#0      CTGTAAAAGGATCAAGTACACCATCGTGTACCTTACGCCATACTCTTCGAGGTCATGTTG 551
consensus_9655#2      ------------------------------------------------------------
consensus_9655#1      CTGTAAAAGGATCAAGTACACCATCGTGTACCTTACG----------------------- 564
                                                                                  

consensus_9655#0      CTGAAATAATTGAACTAACTATATCTATCGATAACCATTTACTCGCATCAATAGATTCAA 611
consensus_9655#2      ------------------------------------------------------------
consensus_9655#1      ------------------------------------------------------------
                                                                                  

consensus_9655#0      ACTGCTGCCTAGTAATATGGTGCCTGAAAACTGGACAACCAGTAGTAGCTGTTCGTGGAT 671
consensus_9655#2      ------------------------------------------------------------
consensus_9655#1      ------------------------------------------------------------
                                                                                  

consensus_9655#0      CACGTAATAACCGGGTACTGTCTGGTCTCGCTTTCCTCAATGTACCTAAAATAGTGAGGC 731
consensus_9655#2      ------------------------------------------------------------
consensus_9655#1      ------------------------------------------------------------
                                                                                  

consensus_9655#0      CAGTGAACACAGATTCATCAAATTCGAATGATGTTAATCATCCTTCTGGTATGCTCATAG 791
consensus_9655#2      ------------------------------------------------------------
consensus_9655#1      ------------------------------------------------------------
                                                                                  

consensus_9655#0      TATCATCCTTTGATGGTTATCTTCACATCATACCTTATATTCACACCGTCCATCATGCTC 851
consensus_9655#2      ------------------------------------------------------------
consensus_9655#1      ------------------------------------------------------------
                                                                                  

consensus_9655#0      ATCGTGAGGATGAGTT 867
consensus_9655#2      ----------------
consensus_9655#1      ----------------