cluster # 9659

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Schistosoma mansoni
cluster # 9659 cluster # 9659 Sequences # 10 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9659#0 length = 1613 sequences # 6

consensus_9659#1 length = 679 sequences # 1
consensus_9659#2 length = 665 sequences # 3

consensusID : consensus_9659#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1613
fasta sequence

                              [TCGAGGCCAANAATTCGGCACGAGGACTAAATCGAGTATTATATACACCACATATTTCATTACCATTTATGGAATTTTTACAAAAACAAGGAAATTTAGGCATATCAAAAGAATTATGGTATTTACTATTACAAGAACCTAAATATGCACTATATCCAGCGCAACAAATTTATTCAACTATATTTGTTGTTAGTGATTCTGGTTGGAACTCATTACCAATTACTCAACTGAATAGATTAAGAAAGAATATCACTTTATTAGCTTCTGTTTTATCTTATCATTATTGTCCAAATCAACTTATTTATCGTGAATGGATTTCAGTGAAACCCAATATGAATATTTATACTGGTTTTCCCAATAGACCACAATCTGCAAGTAGTATTCAACCAAGTGAATTAAACTCAGCCCAACTGTACAAGAGTAGTGGTGATTCAATTATAATATCAAGTGGAAATACTGAAGCAAAATTGGAAGATAAAAGTTTTATCATACAAAAAGCAATTGTTCATATTATTCAAAAGCCATTAGCATTTATATTTGAAACACGTGAGGAAATTCTAAATAGAATTAATTCAAATCTGTTATATTCATGTCAGTTAGATACAATTTGTAAGAATATATTAACATCATCTACAGATATAACAATTTTTTCACCGAATCCACAAGCCATGAAAAATTNTAATAAATTATCTACTAATGAAAAGGCAATTTATCTTGAATATTTATTTTTACCTATGAAGTTATATCAAGCTGAAATGACATTAAGTCGTCGTATCCCTGTTGACAAATTAGAAGATGCTATCCGCTTTAAAATAATTGATCAATCTACTTTTATTGAAGCTCGACTACCCAATCAAGGCTATGTTGCAGCTCGTATCATCAATGCTAATCAAGTAGCAACCAATGGTATTGTTCATATTGTTGATGCTATTCCAGGTTTACCATATGAAACGGTTCAACAGTATGTAGCTAGAATCTCTGATTNTACTTTATATTANCATACAGGTTTTATTCAGTCAATGACTGTTGGTGAACCATATACATTTCTAGTACCAACAAATCAAGCTATGACTTCTATGAATAATGACATTGAAGTGGGAAACAAACTGTTGACTGATAAACTTCGGAAAGATTTTGTGTTTCGTCGTAATACATTTCCACTTGACTTGATAATTCAAGATCTGGATATACGTAAAGTATATTATGTGTCTACAGCAAACTATGCATTCACACGTGAACAATTACGTTTGGAAATTAATTCTAAGAATTCTGATAAAGGTGTATTCACATATCGAGACGAAAGAATTCAAGTATTATCGCTAAATGGACCTTATCAATTTACAAATGGTTTTCTTTATTCAATAGACAAAATCCTTTATACGAAATCGGATCTTAACGCAACAATGTGCACCGTATCAGCTTGTGCATAAGTTGAACATCATTCTGGTTGAATCAATTATTTATTCAATATGGCTGTCCTCAATATTGAAATGTAATAAACTTTACCTAATTTGATTAGTTGTTCTGATGCACATTCGGTGATTTATTACCTTATCTGTTTATACTAAATAATATTCAGTTCGACTTTTTACTCTATTTGTCCTCATTAATAA]

[+] EMBL CD081234             [TCGAGGCCAANAATTCGGCACGAGGACTAAATCGAGTATTATATACACCACATATTTCATTACCATTTATGGAATTTTTACAAAAACAAGGAAATTTAGGCATATCAAAAGAATTATGGTATTTACTATTACAAGAACCTAAATATGCACTATATCCAGCGCAACAAATTTATTCAACTATATTTGTTGTTAGTGATTCTGGTTGGAACTCATTACCAATTACTCAACTGAATAGATTAAGAAAGAATATCACTTTATTAGCTTCTGTTTTATCTTATCATTATTGTCCAAATCAACTTATTTATCGTGAATGGATTTCAGTGAAACCCAATATGAATATTTATACTGGTTTTCCCAATAGACCACAATCTGCAAGTAGTATTCAACCAAGTGAATTAAACTCAGCCCAACTGTACAAGAGTAGTGGTGATTCAATTATAATATCAAGTGGAAATACTGAAGCAAAATTGGAAGATAAAAGTTTTATCATACAAAAAGCAATTGTTCATATTATTCAAAAGCCATTAGCATTTATATTTGAAACACGTGAGGAAATTCTAAATAGAATTAATTCAAATCTGTTATATTCATGTCAGTTAGATACAATTTGTAAGAATATATTAACATCATCTACAGATATAACAATTTTTTCACCGAATCCACAAGCCATGAAAAATTNTAATAAATTATCTACTAATGAAAAGGCAATTTATCTTGAATATTTATTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD079004             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AAATTGGAAGATAAAAGTTTTATCATACAAAAAGCAATTGTTCATATTATTCAAAAGCCATTAGCATTTATATTTGAAACACGTGAGGAAATTCTAAATAGAATTAATTCAAATCTGTTATATTCATGTCAGTTAGATACAATTTGTAAGAATATATTAACATCATCTACAGATATAACAATTTTTTCACCGAATCCACAAGCCATGAAAAATTTTAATAAATTATCTACTAATGAAAAGGCAATTTATCTTGAATATTTATTTTTACCTATGAAGTTATATCAAGCTGAAATGACATTAAGTCGTCGTATCCCTGTTGACAAATTAGAAGATGCTATCCGCTTTAAAATAATTGATCAATCTACTTTTATTGAAGCTCGACTACCCAATCAAGGCTATGTTGCAGCTCGTATCATCAATGCTAATCAAGTAGCAACCAATGGTATTGTTCATATTGTTGATGCTATTCCAGGTTTACCATATGAAACGGTTCAACAGTATGTAGCTAGAATCTCTGATTNTACTTTATATTANCATACAGGTTNTATTCAGTCAATGACTGTTGGTGAACCATATACATTTCTAGTACCAACAAATCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD170578             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GTTCAACAGTATGTAGCTAGAATCTCTGATTTTACTTTATATTACAATACAGGTTTTATTCAGTCAATGACTGTTGGTGAACCATATACATGTCTAGTACCAACAAATCAAGCTATGACTTCTATGAATAATGACATTGAAGTGGGAAACAAACTGTTGACTGATAAACTTCGGAAAGATTTTGTGTCTCGTCGTAATACATTTCCACTTGACTTGATAATTCAAGATCTGGATATACGTAAAGTATATTATGTGTCTACAGCAAACTATGCATTCACACGTGAACAATTACGTTTGGAAATTAATTCTAAGAATTCTGATAAAGGTGTATTCACATATCGAGACGAAAGAATTCAAGTATTATCGCTAAATGGACCTTATCAATTTACAAATGGTTTTCTTTATTCAATAGACAAAATCCTTTATACGAAATCGGATCTTAACGCAACAATGTGCACCGTATCAGCTTGTGCATAAGTTGAACATCATTCTGGTTGAATCAA                                                                                                                                                             ]
[-] EMBL CD073455             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTTATTCAGTCAATGACTGTTGGTGAACCATATACATTTCTAGTACCAACAAATCAAGCTATGACTTCTATGAATAATGACATTGAAGTGGGAAACAAACTGTTGACTGATAAACTTCGGAAAGATTTTGTGTTTCGTCGTAATACATTTCCACTTGACTTGATAATTCAAGATCTGGATATACGTAAAGTATATTATGTGTCTACAGCAAACTATGCATTCACACGTGAACAATTACGTTTGGAAATTAATTCTAAGAATTCTGATAAAGGTGTATTCACATATCGAGACGAAAGAATTCAAGTATTATCGCTAAATGGACCTTATCAATTTACAAATGGTTTTCTTTATTCAATAGACAAAATCCTTTATACGAAATCGGATCTTAACGCAACAATGTGCACCGTATCAGCTTGTGCATAAGTTGAACATCATTCTGGTTGAATCAATTATTTATTCAATATGGCTGTCCTCAATATTGAAATGTAATAAACTTTACCTAATTTGATTAGTTGTTCTGATGCACATTCGGTGATTTATTACCTTATCTGTTTATACTAAATAATATTCAGTTCGACTTTTTACTCTATTTGTCCTCATTAATAA]
[-] EMBL CD075065             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CCATATACATTTCTAGTACCAACAAATCAAGTTATGACTTCTATGAATAATGACATTGAAGTGGGAAACAAACTGTTGACTGATAAACTTCGGAAAGATTTTGTGTTTCGTCGTAATACATTTCCACTTGACTTGATAATTCAAGATCTGGATATACGTAAAGTATATTATGTGTCTACAGCAAACTATGCATTCACACGTGAACAATTACGTTTGGAAATTAATTCTAAGAATTCTGATAAAGGTGTATTCACATATCGAGACGAAAGAATTCAAGTATTATCGCTAAATGGACCTTATCAATTTACAAATGGTTTTCTTTATTCAATAGACAAAATCCTTTATACGAAATCGGATCTTAACGCAACAATGTGCACCGTATCAGCTTGTGCATAAGTTGAACATCATTCTGGTTGAATCAATTATTTATTCAATATGGCTGTCCTCAATATTGAAATGTAATAAACTTTACCTAATTTGATTAGTTGTTCTGATGCACATTCGGTGATTTATTACCTTATCTGTTTATACTAAATAATATTCAGTTCGACTTTTTACTCTATTTGTCCTCATTAATAA]
[-] EMBL AI975451             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ACTTCGGAAAGATTTTGTGTTTCGTCGTAATACATTTCCACTTGACTTGATAATTCAAGATCTGGATATACGTAAAGTATATTATGTGTCTACAGCAAACTATGCATTCACACGTGAACAATTACGTTTGGAAATTAATTCTAAGAATTCTGATAAAGGTGTATTCACATATCGAGACGAAAGAATTCAAGTATTATCGCTAAATGGACCTTATCAATTTACAAATGGTTTTCTTTATTCAATAGACAAAATCCTTTATACGAAATCGGATCTTAACGCAACAATGTGCACCGTATCAGCTTGTGCATAAGTTGAACATCATTCTGGTTGAATCAATTATTTATTCAATATGGCTGTCCTCAATATTGAAATGTAATAAACTTTACCTAATTTGATTAGTTGTTCTGATGCACATTCGGTGATTTATTCCCTTATCTGTTTATACTAAATAATATTCAGTTCGACTTTTTACTCTATTTGTCCTCATTAATAA]




>consensus_9659#0
TCGAGGCCAANAATTCGGCACGAGGACTAAATCGAGTATTATATACACCACATATTTCAT
TACCATTTATGGAATTTTTACAAAAACAAGGAAATTTAGGCATATCAAAAGAATTATGGT
ATTTACTATTACAAGAACCTAAATATGCACTATATCCAGCGCAACAAATTTATTCAACTA
TATTTGTTGTTAGTGATTCTGGTTGGAACTCATTACCAATTACTCAACTGAATAGATTAA
GAAAGAATATCACTTTATTAGCTTCTGTTTTATCTTATCATTATTGTCCAAATCAACTTA
TTTATCGTGAATGGATTTCAGTGAAACCCAATATGAATATTTATACTGGTTTTCCCAATA
GACCACAATCTGCAAGTAGTATTCAACCAAGTGAATTAAACTCAGCCCAACTGTACAAGA
GTAGTGGTGATTCAATTATAATATCAAGTGGAAATACTGAAGCAAAATTGGAAGATAAAA
GTTTTATCATACAAAAAGCAATTGTTCATATTATTCAAAAGCCATTAGCATTTATATTTG
AAACACGTGAGGAAATTCTAAATAGAATTAATTCAAATCTGTTATATTCATGTCAGTTAG
ATACAATTTGTAAGAATATATTAACATCATCTACAGATATAACAATTTTTTCACCGAATC
CACAAGCCATGAAAAATTNTAATAAATTATCTACTAATGAAAAGGCAATTTATCTTGAAT
ATTTATTTTTACCTATGAAGTTATATCAAGCTGAAATGACATTAAGTCGTCGTATCCCTG
TTGACAAATTAGAAGATGCTATCCGCTTTAAAATAATTGATCAATCTACTTTTATTGAAG
CTCGACTACCCAATCAAGGCTATGTTGCAGCTCGTATCATCAATGCTAATCAAGTAGCAA
CCAATGGTATTGTTCATATTGTTGATGCTATTCCAGGTTTACCATATGAAACGGTTCAAC
AGTATGTAGCTAGAATCTCTGATTNTACTTTATATTANCATACAGGTTTTATTCAGTCAA
TGACTGTTGGTGAACCATATACATTTCTAGTACCAACAAATCAAGCTATGACTTCTATGA
ATAATGACATTGAAGTGGGAAACAAACTGTTGACTGATAAACTTCGGAAAGATTTTGTGT
TTCGTCGTAATACATTTCCACTTGACTTGATAATTCAAGATCTGGATATACGTAAAGTAT
ATTATGTGTCTACAGCAAACTATGCATTCACACGTGAACAATTACGTTTGGAAATTAATT
CTAAGAATTCTGATAAAGGTGTATTCACATATCGAGACGAAAGAATTCAAGTATTATCGC
TAAATGGACCTTATCAATTTACAAATGGTTTTCTTTATTCAATAGACAAAATCCTTTATA
CGAAATCGGATCTTAACGCAACAATGTGCACCGTATCAGCTTGTGCATAAGTTGAACATC
ATTCTGGTTGAATCAATTATTTATTCAATATGGCTGTCCTCAATATTGAAATGTAATAAA
CTTTACCTAATTTGATTAGTTGTTCTGATGCACATTCGGTGATTTATTACCTTATCTGTT
TATACTAAATAATATTCAGTTCGACTTTTTACTCTATTTGTCCTCATTAATAA

consensusID : consensus_9659#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 679
fasta sequence

                              [NAATGGNCACGAGGTGCATATTTATACTGGTTTTCCCAATAGACCACAATTTGCAAGTAGTATTCAACCAAGTGAATTAAACTCAGCCCAACTGTACAAGAGTAGTGGTGATTCAATTATAATATCAAGTGGAAATACTGAAGCAAAATTGGAAGATAAAAGTTTTATCATACAAAAAGCAATTGTTCATATTATTCAAAAGCCATTAGCATTTATATTTGAAACACGTGAGGAAATTCTAAATAGAATTAATTCAAATCTGTTATATTCATGTCAGTTAGATACAATTTGTAAGAATATATTAACATCATCTACAGATATAACAATTTTTTCACCGAATCCACAAGCCATGCAAAATTTTAATAAATTATCTACTAATGAAAAGGCAATTTATCTTGAATATTTATTTTTACCTATGAAGTTATATCAAGCTGAAATGACATTAAGTCGTCGTATCCCTGTTGACAAATTAGAAGATGCTATCCGCTTTAAAATAATTGATCAATCTACTTTTATTGAAGCTCGACTACCCAATCAAGGCTATGTTGCAGCTCGTATCATCAATGCTAATCAAGTAGCAACCAATGGTATTGTTCATATTGTTGATGCTATTCCAGGTTTACCATATGAAACGGTTCAACAGTATGTAGCTAGAATCTCTGATTNTACTTTATATTAC]

[+] EMBL CD081442             [NAATGGNCACGAGGTGCATATTTATACTGGTTTTCCCAATAGACCACAATTTGCAAGTAGTATTCAACCAAGTGAATTAAACTCAGCCCAACTGTACAAGAGTAGTGGTGATTCAATTATAATATCAAGTGGAAATACTGAAGCAAAATTGGAAGATAAAAGTTTTATCATACAAAAAGCAATTGTTCATATTATTCAAAAGCCATTAGCATTTATATTTGAAACACGTGAGGAAATTCTAAATAGAATTAATTCAAATCTGTTATATTCATGTCAGTTAGATACAATTTGTAAGAATATATTAACATCATCTACAGATATAACAATTTTTTCACCGAATCCACAAGCCATGCAAAATTTTAATAAATTATCTACTAATGAAAAGGCAATTTATCTTGAATATTTATTTTTACCTATGAAGTTATATCAAGCTGAAATGACATTAAGTCGTCGTATCCCTGTTGACAAATTAGAAGATGCTATCCGCTTTAAAATAATTGATCAATCTACTTTTATTGAAGCTCGACTACCCAATCAAGGCTATGTTGCAGCTCGTATCATCAATGCTAATCAAGTAGCAACCAATGGTATTGTTCATATTGTTGATGCTATTCCAGGTTTACCATATGAAACGGTTCAACAGTATGTAGCTAGAATCTCTGATTNTACTTTATATTAC]




>consensus_9659#1
NAATGGNCACGAGGTGCATATTTATACTGGTTTTCCCAATAGACCACAATTTGCAAGTAG
TATTCAACCAAGTGAATTAAACTCAGCCCAACTGTACAAGAGTAGTGGTGATTCAATTAT
AATATCAAGTGGAAATACTGAAGCAAAATTGGAAGATAAAAGTTTTATCATACAAAAAGC
AATTGTTCATATTATTCAAAAGCCATTAGCATTTATATTTGAAACACGTGAGGAAATTCT
AAATAGAATTAATTCAAATCTGTTATATTCATGTCAGTTAGATACAATTTGTAAGAATAT
ATTAACATCATCTACAGATATAACAATTTTTTCACCGAATCCACAAGCCATGCAAAATTT
TAATAAATTATCTACTAATGAAAAGGCAATTTATCTTGAATATTTATTTTTACCTATGAA
GTTATATCAAGCTGAAATGACATTAAGTCGTCGTATCCCTGTTGACAAATTAGAAGATGC
TATCCGCTTTAAAATAATTGATCAATCTACTTTTATTGAAGCTCGACTACCCAATCAAGG
CTATGTTGCAGCTCGTATCATCAATGCTAATCAAGTAGCAACCAATGGTATTGTTCATAT
TGTTGATGCTATTCCAGGTTTACCATATGAAACGGTTCAACAGTATGTAGCTAGAATCTC
TGATTNTACTTTATATTAC

consensusID : consensus_9659#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 665
fasta sequence

                              [TTAGCATGGTATAGTTTAGGCGATTATCAAAAACATTCATTTATACATGGTCATATAATTCAGAGAGGGATTACTACTGGTCAGTCATCTGTACGTGTAACAACCAGAGAATGGACAAAATTAGGTCAACAAATGAACTTCATTGATATTGGATTCGGTACAGGTGTTAAATATACAACATTATTTGCTAAACAACGATTCGGGTTTTCAACTATAGCA-GATTCTACACCTTTATATTTTGTAAATAATGCAAAAATTATGACACCAGATATTATGGCTTCAAATGGAATAATACAAATAGTAAATCGAGTATTATATACACCACATATTTCATTACCATTTATGGAATTTTTACAAAAACAAGGAAATTTAGGCATATCAAAAGAATTATGGTATTTACTATTACAAGAACCTAAATATGCACTATATCCAGCGCAACAAATTTATTCAACTATATTTGTTGTTAGTGATTCTGGTTGGAACTCATTACCAATTACTCAACTGAATAGATTAAGAAAGAATATCACTTTATTAGCTTCTGTTTTATCTTATCATTATTGTCCAAATCAACTTATTTATCGTGAATGGATTTCAGTGAAACCCAATATGAATATTTATACTGGTTTTCCNAATAGACCACAATCTGCAAGTAGTATTCAACCAAG]

[+] EMBL AI977119             [TTAGCATGGTATAGTTTAGGCGATTATCAAAAACATTCATTTATACATGGTCATATAATTCAGAGAGGGATTACTACTGGTCAGTCATCTGTACGTGTAACAACCAGAGAATGGACAAAATTAGGTCAACAAATGAACTTCATTGATATTGGATTCGGTACAGGTGTTAAATATACAACATTATTTGCTAAACAACGATTCGGGTTTTCAACTATAGCA GATTCTACACCTTTATATTTTGTAAATAATGCAAAAATTATGACACCAGATATTATGGCTTCAAATGGAATAATACAAATAGTAAATCGAGTATTATATACACCACATATTTCATTACCATTTATGGAATTTTTACAAAAACAAGGAAATTTAGGCATATCAAAAGAATTATGGTATTTACTATTACAAGAACCTAAATATGCACTATATCCAGCGCAACAAATTTATTCAACTATATTTGTTGTTAGTGATTCTGGTTGGAACTCATTACCAATTACTCAACTGAATAGATTAAGAAAGAATATCACTTTATTAGCTTCTGGTTTATCTT                                                                                                                   ]
[+] EMBL CD200602             [                                                                                                             AATGGACAAAATTAGGTCAACAAATGAACTTCATTGATATTGGATTCGGTACAGGTGTAGAATATACAACATTATTTGCTAAACAACGATTCGGGTTTTCAACTATAGCACGATTCTACACCTTTATATTTTGTAAATAATGCAAAAATTATGACACCAGATATTATGGCTTCAAATGGAATAATACAAATAGTAAATCGAGTATTATATACACCACATATTTCATTACCATTTATGGAATTTTTACAAAAACAAGGAAATTTAGGCATATCAAAAGAATTATGGTATTTACTATTACAAGAACCTAAATATGCACTATATCCAGCGCAACAAATTTATTCAACTATATTTGTTGTTAGTGATTCTGGTTGGAACTCATTACCAATTACTCAACTGAATAGATTAAGAAAGAATATCACTTTATTAGCCTCTGTTTTATCTTATCATTATTGTCCAAATCAACTTATTTATCGTGAATGGATTTCAGTGAAACCCAATATGAATATTTATACTGGTTTTCCNAATAGACCACAATCTGCAAGTAGTATTCAACCA  ]
[-] EMBL CD200781             [                                                                                                                                                                                                                                       TTTATATTTTGTAAATAATGCCAGAAGTATGACACCAGATATTATGGCTTCAAATGGAATAATACCAATAGTAAATCGAGTATTATATACACCACATATTTCATTACCATTTATGGAATTTTTACAAAAACAAGGAAATTTAGGCATATCAAAAGAATTATGGTATTTACTATTACAAGAACCTAAATATGCCCTATATCCAGCGCAACAAATTTATTCAACTATATTTGTTGTTAGTGATTCTGGTTGGAACTCATTACCCATTACTCCACTGAATAGATTAAGAAAGAATATCACTTTATTAGCTTCTGTTTTATCTTATCATTATTGTCCAAATCAACTTATTTATCGTGAAAGGAATTCAGTGTAACCCCATATGAATATTTATACTGGTTTTCCCCATAGACCACAATCTGCAAGTAGTATTCTACCCAG]




>consensus_9659#2
TTAGCATGGTATAGTTTAGGCGATTATCAAAAACATTCATTTATACATGGTCATATAATT
CAGAGAGGGATTACTACTGGTCAGTCATCTGTACGTGTAACAACCAGAGAATGGACAAAA
TTAGGTCAACAAATGAACTTCATTGATATTGGATTCGGTACAGGTGTTAAATATACAACA
TTATTTGCTAAACAACGATTCGGGTTTTCAACTATAGCAGATTCTACACCTTTATATTTT
GTAAATAATGCAAAAATTATGACACCAGATATTATGGCTTCAAATGGAATAATACAAATA
GTAAATCGAGTATTATATACACCACATATTTCATTACCATTTATGGAATTTTTACAAAAA
CAAGGAAATTTAGGCATATCAAAAGAATTATGGTATTTACTATTACAAGAACCTAAATAT
GCACTATATCCAGCGCAACAAATTTATTCAACTATATTTGTTGTTAGTGATTCTGGTTGG
AACTCATTACCAATTACTCAACTGAATAGATTAAGAAAGAATATCACTTTATTAGCTTCT
GTTTTATCTTATCATTATTGTCCAAATCAACTTATTTATCGTGAATGGATTTCAGTGAAA
CCCAATATGAATATTTATACTGGTTTTCCNAATAGACCACAATCTGCAAGTAGTATTCAA
CCAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9659#0      TCGAGGCCAANAATTCGGCACGAGGACTAAATCGAGTATTATATACACCACATATTTCAT 60
consensus_9659#1      ------------------------------------------------------------
consensus_9659#2      ------------------------------------------------------------
                                                                                  

consensus_9659#0      TACCATTTATGGAATTTTTACAAAAACAAGGAAATTTAGGCATATCAAAAGAATTATGGT 120
consensus_9659#1      ------------------------------------------------------------
consensus_9659#2      ------------------------------------------------------------
                                                                                  

consensus_9659#0      ATTTACTATTACAAGAACCTAAATATGCACTATATCCAGCGCAACAAATTTATTCAACTA 180
consensus_9659#1      ------------------------------------------------------------
consensus_9659#2      ------------------------------------------------------------
                                                                                  

consensus_9659#0      TATTTGTTGTTAGTGATTCTGGTTGGAACTCATTACCAATTACTCAACTGAATAGATTAA 240
consensus_9659#1      ------------------------------------------------------------
consensus_9659#2      ------------------------------------------------------------
                                                                                  

consensus_9659#0      GAAAGAATATCACTTTATTAGCTTCTGTTTTATCTTATCATTATTGTCCAAATCAACTTA 300
consensus_9659#1      ------------------------------------------------------------
consensus_9659#2      ------------------------------------------------------------
                                                                                  

consensus_9659#0      TTTATCGTGAATGGATTTCAGTGAAACCCAATATGAATATTTATACTGGTTTTCCCAATA 360
consensus_9659#1      ------------------NAATGGN-CACGAGGTGCATATTTATACTGGTTTTCCCAATA 41
consensus_9659#2      ----------TTAGCATGGTATAGTTTAGGCGATTATCAAAAACATTCATTTATACATGG 50
                                           *           *    *   * * *  ***   **   

consensus_9659#0      GACCACAATCTGCAAGTAGTATTCAACCAAGTGAATTAAACTCA-GCCCAACTGTACAAG 419
consensus_9659#1      GACCACAATTTGCAAGTAGTATTCAACCAAGTGAATTAAACTCA-GCCCAACTGTACAAG 100
consensus_9659#2      TCATATAATTCA-GAGAGGGATTACTACTGGTCAGTCATCTGTACGTGTAACAACCAGAG 109
                          * ***     **  * ***    *  ** * * *     * *   ***      **

consensus_9659#0      AGTAGTGGTGATTCAATTATAATATCAAGTGGA--AATACTGAAGCAAAATTGGAAGATA 477
consensus_9659#1      AGTAGTGGTGATTCAATTATAATATCAAGTGGA--AATACTGAAGCAAAATTGGAAGATA 158
consensus_9659#2      AATGGACAAAATTAGGTCAACAAATGAACTTCATTGATATTGGATTCGGTACAGGTGTTA 169
                      * * *     ***   * *  * ** ** *  *   *** ** *         *  * **

consensus_9659#0      AAAGTTT--TATCATACAAAAAGCAATTGTTCATATTATTCAAAAGCCATTAGCATTTAT 535
consensus_9659#1      AAAGTTT--TATCATACAAAAAGCAATTGTTCATATTATTCAAAAGCCATTAGCATTTAT 216
consensus_9659#2      AATATACAACATTATTTGCTAAACAACGATTCGGGTT-TTCAACTAT-AGCAGATTCTAC 227
                      **  *     ** **     ** ***   ***   ** *****     *  **  * ** 

consensus_9659#0      ATTTGAAACACGTGAGGAAATTCTAAATAGAATTAATTCAAATCTGTTATATTCATGTCA 595
consensus_9659#1      ATTTGAAACACGTGAGGAAATTCTAAATAGAATTAATTCAAATCTGTTATATTCATGTCA 276
consensus_9659#2      ACCTTTATATTTTGTAAATAATGCAAAAATTATGACACCAGATATTATGGCTTCAAATGG 287
                      *  *  *     **   * * *  *** *  ** *   ** ** *  *   ****  *  

consensus_9659#0      GTTAGATACAATTTGTAAGAATATATTAACATCATCTACAGATATAACAATTTTTTCACC 655
consensus_9659#1      GTTAGATACAATTTGTAAGAATATATTAACATCATCTACAGATATAACAATTTTTTCACC 336
consensus_9659#2      AATA-ATACAAATAGTAAATCGAGTATTATATACACCACATATTTCATTACCATTT-ATG 345
                        ** ****** * ****    *   * * **   * *** ** * *  *   *** *  

consensus_9659#0      GAATCC--ACAAGCCATGAAAAATTNTAATAAATTATCTACTAATGAAAAGGCAATTTAT 713
consensus_9659#1      GAATCC--ACAAGCCATGCAAAATTTTAATAAATTATCTACTAATGAAAAGGCAATTTAT 394
consensus_9659#2      GAATTTTTACAAAAACAAGGAAATTTAGGCATATCAA--AAGAATTATGGTATTTACTAT 403
                      ****    ****        *****     * ** *   *  *** *          ***

consensus_9659#0      CTTGAATATTTATTTTTAC-CTATGAA-GTTATATCAAGCTGA---AATGACATTAAGTC 768
consensus_9659#1      CTTGAATATTTATTTTTAC-CTATGAA-GTTATATCAAGCTGA---AATGACATTAAGTC 449
consensus_9659#2      TACAAGAACCTAAATATGCACTATATCCAGCGCAACAAATTTATTCAACTATATTTGTTG 463
                          *  *  **  * * * ****         * ***  * *   **  * ***   * 

consensus_9659#0      GTCGTATCCCTGTTGACAAATTAGAAGATGCTATCCGCTTTAA--AATAATTGATCAATC 826
consensus_9659#1      GTCGTATCCCTGTTGACAAATTAGAAGATGCTATCCGCTTTAA--AATAATTGATCAATC 507
consensus_9659#2      TTAGTGATTCTGGTTGGAACTCATTACCAATTACTCAACTGAATAGATTAAGAAAGAATA 523
                       * **    *** *   ** * *  *     **  *   * **   ** *   *  *** 

consensus_9659#0      TACTTTTATTGAAGCTCGACT-ACCCAATCAAGGCTATGTTGCAGCTCGTATCATCAATG 885
consensus_9659#1      TACTTTTATTGAAGCTCGACT-ACCCAATCAAGGCTATGTTGCAGCTCGTATCATCAATG 566
consensus_9659#2      TCACTTTATTAGCTTCTGTTTTATCTTATCA---TTATTGTCCAAATCAACTTATTTATC 580
                      *   ******       *  * * *  ****    ***  * **  **   * **  ** 

consensus_9659#0      CTAATCAAGTAGCAACCAATGGTATTGTTCATATTGTTGATGCTATTCCAGGTTTACCAT 945
consensus_9659#1      CTAATCAAGTAGCAACCAATGGTATTGTTCATATTGTTGATGCTATTCCAGGTTTACCAT 626
consensus_9659#2      GTGAATGGATTTCAGTGAAACCCAATATGAATATTTATACTGGTTTTCCNAATAGACCAC 640
                       * *     *  **   **    * * *  *****  *  ** * ****   *  **** 

consensus_9659#0      ATGAAACGGTTCAACAGTATGTAGCTAGAATCTCTGATTNTACTTTATATTANCATACAG 1005
consensus_9659#1      ATGAAACGGTTCAACAGTATGTAGCTAGAATCTCTGATTNTACTTTATATTAC------- 679
consensus_9659#2      ----AATCTGCAAGTAGTATTCAACCAAG------------------------------- 665
                          **      *  *****  * * *                                 

consensus_9659#0      GTTTTATTCAGTCAATGACTGTTGGTGAACCATATACATTTCTAGTACCAACAAATCAAG 1065
consensus_9659#1      ------------------------------------------------------------
consensus_9659#2      ------------------------------------------------------------
                                                                                  

consensus_9659#0      CTATGACTTCTATGAATAATGACATTGAAGTGGGAAACAAACTGTTGACTGATAAACTTC 1125
consensus_9659#1      ------------------------------------------------------------
consensus_9659#2      ------------------------------------------------------------
                                                                                  

consensus_9659#0      GGAAAGATTTTGTGTTTCGTCGTAATACATTTCCACTTGACTTGATAATTCAAGATCTGG 1185
consensus_9659#1      ------------------------------------------------------------
consensus_9659#2      ------------------------------------------------------------
                                                                                  

consensus_9659#0      ATATACGTAAAGTATATTATGTGTCTACAGCAAACTATGCATTCACACGTGAACAATTAC 1245
consensus_9659#1      ------------------------------------------------------------
consensus_9659#2      ------------------------------------------------------------
                                                                                  

consensus_9659#0      GTTTGGAAATTAATTCTAAGAATTCTGATAAAGGTGTATTCACATATCGAGACGAAAGAA 1305
consensus_9659#1      ------------------------------------------------------------
consensus_9659#2      ------------------------------------------------------------
                                                                                  

consensus_9659#0      TTCAAGTATTATCGCTAAATGGACCTTATCAATTTACAAATGGTTTTCTTTATTCAATAG 1365
consensus_9659#1      ------------------------------------------------------------
consensus_9659#2      ------------------------------------------------------------
                                                                                  

consensus_9659#0      ACAAAATCCTTTATACGAAATCGGATCTTAACGCAACAATGTGCACCGTATCAGCTTGTG 1425
consensus_9659#1      ------------------------------------------------------------
consensus_9659#2      ------------------------------------------------------------
                                                                                  

consensus_9659#0      CATAAGTTGAACATCATTCTGGTTGAATCAATTATTTATTCAATATGGCTGTCCTCAATA 1485
consensus_9659#1      ------------------------------------------------------------
consensus_9659#2      ------------------------------------------------------------
                                                                                  

consensus_9659#0      TTGAAATGTAATAAACTTTACCTAATTTGATTAGTTGTTCTGATGCACATTCGGTGATTT 1545
consensus_9659#1      ------------------------------------------------------------
consensus_9659#2      ------------------------------------------------------------
                                                                                  

consensus_9659#0      ATTACCTTATCTGTTTATACTAAATAATATTCAGTTCGACTTTTTACTCTATTTGTCCTC 1605
consensus_9659#1      ------------------------------------------------------------
consensus_9659#2      ------------------------------------------------------------
                                                                                  

consensus_9659#0      ATTAATAA 1613
consensus_9659#1      --------
consensus_9659#2      --------