|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9660#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1710 fasta sequence
[AAAACCACCCATCGTCTGTCCCAGTTTGGTACTCTCTTTGCCATATTGTACTGGGTGTAAATAATGTTGGGTAGAGAAGTAACCAAGCCTGCATAATTTTGTTCAGTAGAAAAAGATGGTTGATAATCAAATCCG-ATCGTTGTTA-CCCGGA-AGGGGGAATC-AAGATAACCGG-AAGAAAATACA-GCATCATCTCATCACAGGTAACCTCCAACATACCTCACTAGAGAATACATAGTCGCTAAAGAAACAAGTAGAATTGATGATATTCAGTCATTTGTCTTTCTTCATACGTACGCTCAATAAGTATAATAATAGAATAATGCCGGAAGACAAAGCCGTCAAATTGTAATATTAACAATAATAATAATAATACATGTGATTATAAAATACAGAGATAGAAGAGGAATTACGATAGCCAAGCATGTGAATGAACAAATAAACAAATATATGAGTCAATAATTTTGATTGGATTTCCACAATTAGCTGAGATTAAACTTGAGTTTACACTGTGAATATCACAGAATGGGATGTGGAGGATAGATTGAGCAAGATAAATAAAAATAGATTTGGTACACAATAACTAAATATGTATAAATCTTGAAAAAGAAAGTATGTGTGTGTGTGTTTTTGATCAAGTGCGGATTCAGTTGAAAGAGGATAAAGACAGTGAAAGAACTCTTGAGTCGATTAGAAATTAATAGAAAAAATAGAATATGATGATTATATTAAAAAATT-AATCATAATAAATCGTCAATAAACTCTTTATACTGTTGGACGTGACTAGAATTATGCAATGACGACAACTCTCTAGGCAAATTCCTCTCATTCATGATTAAGTTACAAGAAGAGTTTATTATATGAGGTGATGATGACGACGACGATGATGTTGATGTAATGTCATGTTTGGCTTGATCATCAGTGAGTAAAGATGACTGATCAATAACTATCACTGTAGAATTACCATTCTTAGGAATCATTGAATTAAAATTATAAAATGCATTATCACCTTCACGTATATCTTTTGATGGCTGCCCACATTGTTGAAAGTTCACATCGATATGACTGACTTGTGGTTGAGTAGTAACAGAGTCTGGTGCTGATGGAAGTAGCGGTGGACATCGAACAATATTTAATTTATTCGAATGGGAATTACCTTGAGGAATTATAGGAAATTTTGGATTAAGTTGAGTGCGCTTCTCAGTACTAACTGTGG-AATTATTAATG-TAGTAGTTGGTGCAAGTGTAAGTGTTTGTAGATTATTAGATGAATAAGTGTAAACTGAAGACTGACCTATTAACGGATTGATTTGAAGTAATGACTCTGCTGAAGGGTGTATGGATCCGATTGATTCGGAGCGATTTTGACTATCATTGGTACTACAATCTGTATAAATTGGTGAAGTATCACACTGTAATTTTCGACTGCTAACGGAAGACATTTCAGTAGTCTGGTTAAAAATATTAGTTAGGACAGAATCCATGAGAAATGCCATTTTCTCAGGTTTACAGCTCTCTTCAATCCATTTTATCACTGATGCTGAGAGGTCAGTAAAAGAACTGAATACAATATAATTGTCAAATGAACGGAACATAGTGTCAAAAAACACTCGAAACACTTCTAGCTTTGTATCATCTGAAATCGGCTCAACAGACCTACATTCATAATTTGGACCTGTTTTGAACTATTTTCTCATAATTCAAGCCTAGTGTT]
[-] EMBL AW497749 [AAAACCACCCATCGTCTGTCCCAGTTTGGTACTCTCTTTGCCATATTGTACTGGGTGTAAATAATGTTGGGTAGAGAAGTAACCAAGCCTGCATAATTTTGTTCAGTAGAAAAAGATGGTTGATAATCAAATCCG ATCGTTGTTACCCCGGACAGGGGGAATC AAGATAACCGG AAGAAAATACA GCATCATCTCATCACAGGTAACCTCCAACATACCTCACTAGAGAATACATAGTCGCTAAAGAAACAAGTAGAATTGATGATATTCAGTCATTTGTCTTTCTTCATACGTACGCTCAATAAGTATAATAATAGAATAATGCCGGAAGACAAAGCCGTCAAATTGTAATATTAACAATAATAATAATAATACATGTGATTATAAAATACAGAGATAGAAGAGGAATTACGATAGCCAAGCATGTGAATGAACAAATAAACAAATATA ]
[+] EMBL CD169669 [ TAATCAAATACGAATCGTTGTTA ACCAGA AGGAGAAATCAAAGATAACCGGAAAGAAAATACAGGCATCATCTCATCACAGGTAACCTCCAACATACCTCACTAGAGAATACATAGTCGCTAAAGAAACAAGTAGAATTGATGATATTCAGTCATTTGTCTTTCTTCATACGTACGCTCAATAAGTATAATAATAGAATAATGCCGGAAGACAAAGCCGTCAAATTGTAATATTAACAATAATAATAATAATACATGTGATTATAAAATACAGAGATAGAAGAGGAATTACGATAGCCAAGCATGTGAATGAACAAATAAACAAATATATGAGTCAATAATTTTGATTGGATTTCCACAATTAGCTGAGATTAAACTTGAGTTTACACTGTGAATATCACAGAATGGGATGTGGAGGATAGATTGAGCAAGATAAATAAAAATAGATTTGGTACACAATAACTAAATATGTATAAATCTTGAAAAAGAAAGTATGTGTGTGTGTGTTTTTGATCAAGTGCGGATTCAGTTGAAAGAGGATAAAGACAGTGAAAGAACTCTTGAGTCGATTCGAAATTAATAGAAAAAATAGAATATGATGATTATATTAAAAAATTAAATCAT ATAAATCGTCAAT ]
[+] EMBL CD201818 [ GAATTACGATAGCCAAGCATGTGAATGAACAGATAAACAAATATATGAGTCAATAATTTTGATTGGATTTCCACAATTAGCTGAGATTAAACTTGAGTTTACACTGTGAATATCACAGAATGGGATGTGGAGGATAGATTGAGCAAGATAAATAAAAATAGATTTGGTACACAATAACTAAATATGTATAAATCTTGAAAAAGAAAGTATGTGTGTGTGTGTTTTTGATCAAGTGCGGATTCAGTTGAAAGAGGATAAAGACAGTGAAAGAACTCTTGAGTCGATTAGAAATTAATAGAAAAAATAGAATATGATGATTATATTAAAAAATT AATCATAATAAATCGTCAATAAACTCTTTATACTGTTGGACGTGACTAGAATTATGCAATGACGACAACTCTCTAGGCAAATTCCTCTCATTCATGATTAAGTTACAAGAAGAGTTTATTATATGAGGTGATGATGACGACGACGATGATGTTGATGTAATGTCATGTTTGGCTTGATCATCAGTGAGTAAAGATGACTGATCANNTACTATCACTGTAGAATTACCATTCTT ]
[+] EMBL CD194958 [ GTTGAAAGAGGATAAAGACAGTGAAAGAACTCTTGAGTCGATTAGAAATTAATAGAAAAAATAGAATATGATGATTATATTAAAAAATT AATCATAATAAATCGTCAATAAACTCTTTATACTGTTGGACGTGACTAGAATTATGCAATGACGACAACTCTCCAGGCGAATTCCTCTCATTCATGATTAAGTTACAAGAAGAGTTTATTATATGAGGTGATGATGACGACGACGATGATGTTGATGTAATGACATGTTTGGCTTGATCATCAGTGAGTAAAGATGACTGATCAATAACTATCACTGTAGAATTACCATTCTTAGGAATCATTGAATTAAAATTATAAAATGCATTATCACCTTCACGTATATCTTTTGATGGCTGCCCACATTGTTGAAAGTTCACATCGATATGACTGACTTGTGGTTGAGTAGTAACAGAGTCTGGTGCTGATGGAAGTAGCGGTGGACATCGAACAATATTTAATTTATTCGAATGGGAATTACCTTGAGGAATTATANNGAATTNTGGATTAAGTTGAGTGCGCTTCTCAGTACTAACTGTGGAAATTATTAATG TAGTAGTTGGTGCAAGTGTAAGTGTTTGTAGATAATTAGATGAATNAGTGTAAACTGAAGACTGACCTATTAACGGATTGATT ]
[+] EMBL CD194922 [ GTTGAAAGAGGATAAAGACAGTGAAAGAACTCTTGAGTCGATTAGAAATTAATAGAAAAAATAGAATATGATGATTATATTAAAAAATT AATCATAATAAATCGTCAATAAACTCTTTATACTGTTGGACGTGACTAGAATTATGCAATGACGACAACTCTCTAGGCAAATTCCTCTCATTCATGATTAAGTTACAAGAAGAGTTTATTATATGAGGTGATGATGACGGCGACGATGATGTTGATGTAATGTCATGTTTGGCTTGATCATCAGTGAGTAAAGATGACTGATCAATAACTATCACTGTAGAATTACCATTCTTAGGTATCATTGAATTAAAATTATAAAATGCATTATCACCTTCACGTATATCTTTTGATGGCTGCCCACATTGTTGAAAGTTCACATCGATATGACTGACTTGTGGTTGAGTAGTAACAGAGTCTGGTGCTGATGGAAGTAGCGGTGGACATCGAACAATATTTAATTTATTCGAATGGGAATTACCTTGAGGAATTATAGGAAATTTTGGATTAA ]
[+] EMBL CD123211 [ TTTGATGGCTGCCCACATTGTTGAAAGTTCACATCGATATGACTGACTTGTGGTTGAGTAGTAACAGAGTCTGGTGCTGATGGAAGTAGCGGTGGACATCGAACAATATTTAATTCATTCGAATGGGAATTACCTTGAGGAATTATAGGAAATTTTGGATTAAGTTGAGTGCGCTTCTCAGTACTAACTGTGG AATTATTAATGTTAGTAGTTGGTGCAAGTGTAAGTGTTTGTAGATTATTAGATGAATAAGTGTAAACTGAAGACTGACCTATTAACGGATTGATTTGAAGTA ]
[-] EMBL CD190979 [ ACTGTGG AATTATTAATGTTAGTAGTTGGTGCAAGTGTAAGTGTTTGTAGATTATTAGATGAATAAGTGTAAACTGAAGACTGACCTATTAACGGATTGATTTGAAGTAATGACTCTGCTGAAGGGTGTATGGATCCGATTGATTCGGAGCGATTTTGACTATCATTGGTACTACAATCTGTATAAATTGGTGAAGTATCACACTGTAATTTTCGACTGCTAACGGAAGACATTTCAGTAGTCTGGTTAAAAATATTAGTTAGGACAGAATCCATGAGAAATGCCATTTTCTCAGGTTTACAGCTCTCTTCAATCCATTTTATCACTGATGCTGAGAGGTCAGTAAAAGAACTGAATACAATATAATTGTCAAATGAACGGAACATAGTGTCAAAAAAC ]
[+] EMBL CD178185 [ ATGGATCCGATAGATTCGGAGCGATTTTGACTATCATTGGTACTACAGTCTGTATAAATTGGTGAAGTATTACACTGTAATTTTCGACTGCTAACGGAAGACATTTCAGTAGTCTGGTTAAAAATATTAGTTAGGACAGAATCCATGAGAAATGCCATTTTCTCAGGTTTACAGCTCTCTTCAATCCATTTTATCACTGATGCTGAGAGGTCAGTAAAAGAACTGAATACAATATAATTGTCAAATGAACGGAACATAGTGTCAAAAAACACTCGAAACACTTCTAGCTTTGTATCATCTGAAATCGGCTCAACAGACCTACATTCATAATTTGGACCTGTTTTGAACTATTTTCTCATAATTCAAGCCTAGTGTT]
consensusID : consensus_9660#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence
[CTAGAGAATACATAGTCGCTAAAGAGACAAGTAGAATTGATGATATTCAGTCATTTGTCTTTCTTCATACGTACGCTCAATAAGTATAATAATAGAATAATGCCGGAAGACAAAGCCGTCAAATTGTAATATTAACAATAATAATAATAATCGAAAGCAGTTTACCATGTAAACACCATTGTACATCGACCAGAACTTCCGTTTTGAGTTGGTATTTTTTATGATTCATAACTTTATATTAGTTTGATCATTTCATTTTGTTTTCTTTTCACCGGTATATTTGACTTATTATCTTGGTAAAATAATTTTGTTTTTTTTCTACGAACTATT]
[-] EMBL CD146429 [CTAGAGAATACATAGTCGCTAAAGAGACAAGTAGAATTGATGATATTCAGTCATTTGTCTTTCTTCATACGTACGCTCAATAAGTATAATAATAGAATAATGCCGGAAGACAAAGCCGTCAAATTGTAATATTAACAATAATAATAATAATCGAAAGCAGTTTACCATGTAAACACCATTGTACATCGACCAGAACTTCCGTTTTGAGTTGGTATTTTTTATGATTCATAACTTTATATTAGTTTGATCATTTCATTTTGTTTTCTTTTCACCGGTATATTTGACTTATTATCTTGGTAAAATAATTTTGTTTTTTTTCTACGAACTATT]
consensusID : consensus_9660#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 305 fasta sequence
[TATAGTTTAGGACAGAATCCATGAGAAATGCCATTTCTCAGGTTTACAGCTCTCTTCAATCCATTTTATCACTGATGCTGAGAGGTCAGTAAAAGAACTGAATACAATATAATTGTCAAATGAACGGAACATAGTGTCAAAAAACACTCGAAACACTTCTAGCTTTGTATCATCTGAAATCGGCTCAACAGACCTACATTCATAATTTGGACTGTTTTGAACTATTTTCTCATAATTCCTGAATGTAAGAAACAACTTCGTTGAGGACTTACAAGCATAGTATTCGAAGAGCTTTAACCTCCTTT]
[-] EMBL CD181679 [TATAGTTTAGGACAGAATCCATGAGAAATGCCATTTCTCAGGTTTACAGCTCTCTTCAATCCATTTTATCACTGATGCTGAGAGGTCAGTAAAAGAACTGAATACAATATAATTGTCAAATGAACGGAACATAGTGTCAAAAAACACTCGAAACACTTCTAGCTTTGTATCATCTGAAATCGGCTCAACAGACCTACATTCATAATTTGGACTGTTTTGAACTATTTTCTCATAATTCCTGAATGTAAGAAACAACTTCGTTGAGGACTTACAAGCATAGTATTCGAAGAGCTTTAACCTCCTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9660#0 AAAACCACCCATCGTCTGTCCCAGTTTGGTACTCTCTTTGCCATATTGTACTGGGTGTAA 60
consensus_9660#2 ------------------------------------------------------------
consensus_9660#1 ------------------------------------------------------------
consensus_9660#0 ATAATGTTGGGTAGAGAAGTAACCAAGCCTGCATAATTTTGTTCAGTAGAAAAAGATGGT 120
consensus_9660#2 ------------------------------------------------------------
consensus_9660#1 ------------------------------------------------------------
consensus_9660#0 TGATAATCAAATCCGATCGTTGTTACCCGGAAGGGGGAATCAAGATAACCGGAAGAAAAT 180
consensus_9660#2 ------------------------------------------------------------
consensus_9660#1 ------------------------------------------------------------
consensus_9660#0 ACAGCATCATCTCATCACAGGTAACCTCCAACATACCTCACTAGAGAATACATAGTCGCT 240
consensus_9660#2 ------------------------------------------------------------
consensus_9660#1 ------------------------------------------------------------
consensus_9660#0 AAAGAAACAAGTAGAATTGATGATATTCAGTCATTTGTCTTTCTTCATACGTACGCTCAA 300
consensus_9660#2 ------------------------------------------------------------
consensus_9660#1 ------------------------------------------------------------
consensus_9660#0 TAAGTATAATAATAGAATAATGCCGGAAGACAAAGCCGTCAAATTGTAATATTAACAATA 360
consensus_9660#2 ------------------------------------------------------------
consensus_9660#1 ------------------------------------------------------------
consensus_9660#0 ATAATAATAATACATGTGATTATAAAATACAGAGATAGAAGAGGAATTACGATAGCCAAG 420
consensus_9660#2 ------------------------------------------------------------
consensus_9660#1 ------------------------------------------------------------
consensus_9660#0 CATGTGAATGAACAAATAAACAAATATATGAGTCAATAATTTTGATTGGATTTCCACAAT 480
consensus_9660#2 ------------------------------------------------------------
consensus_9660#1 ------------------------------------------------------------
consensus_9660#0 TAGCTGAGATTAAACTTGAGTTTACACTGTGAATATCACAGAATGGGATGTGGAGGATAG 540
consensus_9660#2 ------------------------------------------------------------
consensus_9660#1 ------------------------------------------------------------
consensus_9660#0 ATTGAGCAAGATAAATAAAAATAGATTTGGTACACAATAACTAAATATGTATAAATCTTG 600
consensus_9660#2 ------------------------------------------------------------
consensus_9660#1 ------------------------------------------------------------
consensus_9660#0 AAAAAGAAAGTATGTGTGTGTGTGTTTTTGATCAAGTGCGGATTCAGTTGAAAGAGGATA 660
consensus_9660#2 ------------------------------------------------------------
consensus_9660#1 ------------------------------------------------------------
consensus_9660#0 AAGACAGTGAAAGAACTCTTGAGTCGATTAGAAATTAATAGAAAAAATAGAATATGATGA 720
consensus_9660#2 ------------------------------------------------------------
consensus_9660#1 ------------------------------------------------------------
consensus_9660#0 TTATATTAAAAAATTAATCATAATAAATCGTCAATAAACTCTTTATACTGTTGGACGTGA 780
consensus_9660#2 ------------------------------------------------------------
consensus_9660#1 ------------------------------------------------------------
consensus_9660#0 CTAGAATTATGCAATGACGACAACTCTCTAGGCAAATTCCTCTCATTCATGATTAAGTTA 840
consensus_9660#2 ------------------------------------------------------------
consensus_9660#1 ------------------------------------------------------------
consensus_9660#0 CAAGAAGAGTTTATTATATGAGGTGATGATGACGACGACGATGATGTTGATGTAATGTCA 900
consensus_9660#2 ------------------------------------------------------------
consensus_9660#1 ------------------------------------------------------------
consensus_9660#0 TGTTTGGCTTGATCATCAGTGAGTAAAGATGACTGATCAATAACTATCACTGTAGAATTA 960
consensus_9660#2 ------------------------------------------------------------
consensus_9660#1 ------------------------------------------------------------
consensus_9660#0 CCATTCTTAGGAATCATTGAATTAAAATTATAAAATGCATTATCACCTTCACGTATATCT 1020
consensus_9660#2 ------------------------------------------------------------
consensus_9660#1 ------------------------------------------------------------
consensus_9660#0 TTTGATGGCTGCCCACATTGTTGAAAGTTCACATCGATATGACTGACTTGTGGTTGAGTA 1080
consensus_9660#2 ------------------------------------------------------------
consensus_9660#1 ------------------------------------------------------------
consensus_9660#0 GTAACAGAGTCTGGTGCTGATGGAAGTAGCGGTGGACATCGAACAATATTTAATTTATTC 1140
consensus_9660#2 ------------------------------------------------------------
consensus_9660#1 ------------------------------------------------------------
consensus_9660#0 GAATGGGAATTACCTTGAGGAATTATAGGAAATTTTGGATTAAGTTGAGTGCGCTTCTCA 1200
consensus_9660#2 ------------------------------------------------------------
consensus_9660#1 ------------------------------------------------------------
consensus_9660#0 GTACTAACTGTGGAATTATTAATGTAGTAGTTGGTGCAAGTGTAAGTGTTTGTAGATTAT 1260
consensus_9660#2 ------------------------------------------------------------
consensus_9660#1 ------------------------------------------------------------
consensus_9660#0 TAGATGAATAAGTGTAAACTGAAGACTGACCTATTAACGGATTGATTTGAAGTAATGACT 1320
consensus_9660#2 ------------------------------------------------------------
consensus_9660#1 ------------------------------------------------------------
consensus_9660#0 CTGCTGAAGGGTGTATGGATCCGATTGATTCGGAGCGATTTTGACTATCATTGGTACTAC 1380
consensus_9660#2 ------------------------------------------------------------
consensus_9660#1 ------------------------------------------------------------
consensus_9660#0 AATCTGTATAAATTGGTGAAGTATCACACTGTAATTTTCGACTGCTAACGGAAGACATTT 1440
consensus_9660#2 ------------------------------------------------------------
consensus_9660#1 ------------------------------------------------------------
consensus_9660#0 CAGTAGTCTGGTTAAAAATATTAGTTAGGACAGAATCCATGAGAAATGCCATTTTCTCAG 1500
consensus_9660#2 ------------------TATAGTTTAGGACAGAATCCATGAGAAATGCCATTT-CTCAG 41
consensus_9660#1 --------CTAGAGAATACATAG-TCGCTAAAGAGACAAGTAGAATTGATGATA-TTCAG 50
** * * *** * * **** ** * ****
consensus_9660#0 GTTTACAGCTCTCTTCA---ATCCATTTTATCACTGATGCTGAGAGGTCAGTAAAAGAAC 1557
consensus_9660#2 GTTTACAGCTCTCTTCA---ATCCATTTTATCACTGATGCTGAGAGGTCAGTAAAAGAAC 98
consensus_9660#1 TCATTTGTCTTTCTTCATACGTACGCTCAATAAGT-ATAATAATAGAATAATGCCGGAAG 109
* ** ****** * * * ** * * ** * * ** * * ***
consensus_9660#0 TGAATACAATATAATTGTCAAATGAACGGAACATAGTGTCAAAAAACACTCGAAACACTT 1617
consensus_9660#2 TGAATACAATATAATTGTCAAATGAACGGAACATAGTGTCAAAAAACACTCGAAACACTT 158
consensus_9660#1 ACAAAGCCGTCAAATTGTAATATTAACA----ATAATAATAATAATCGAAAGCAGT-TTA 164
** * * ****** * ** *** *** * ** ** * * * *
consensus_9660#0 CTAGCTTTGTATCATCTGAAATCGGCTCAACAGACCTACATTCATAATTTGGACCTGTTT 1677
consensus_9660#2 CTAGCTTTGTATCATCTGAAATCGGCTCAACAGACCTACATTCATAATTTGGAC-TGTTT 217
consensus_9660#1 CCATGTAAACACCATTGTACATCGACCAGA---ACTTCCGTTTTGAGTTGGTATTTTTTA 221
* * * * *** * **** * * ** * * ** * ** * * * **
consensus_9660#0 TGAACTAT---TTTCTCATAATTCAAGCCTAGTGTT------------------------ 1710
consensus_9660#2 TGAACTAT---TTTCTCATAATTC---CTGAATGTAA-GAAACAACTTCGTTGAGGACTT 270
consensus_9660#1 TGATTCATAACTTTATATTAGTTTGATCATTTCATTTTGTTTTCTTTTCACCGGTATATT 281
*** ** *** * ** ** * *
consensus_9660#0 -------------------------------------------------
consensus_9660#2 ACAAGCATAGTATTCGAAGAGC--TTTAACCTCCTTT------------ 305
consensus_9660#1 TGACTTATTATCTTGGTAAAATAATTTTGTTTTTTTTCTACGAACTATT 330
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||