These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9662#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 557 fasta sequence [ACAGATAGATCATATTTGTATCAAAAAAGATTCCAAAGGACCGTGGAGGATGTGAGAACCAGTAGAGGAGCTGGCATAGCTTCAGGTCACCACCTGATGGTCGCCAAGATCAAACTGAAGCTAAACAAACATTGGACAACTGTATAAACAGCAATACAAAGTTTCAATACAGCCTTCCTTCGAGATACCAACAACTAGTTGACGAATTCAGAATGACTCTCAGCAACAGGTTCCACGCTCTTGACACGGTCACATCTTGATACGAAGAGGAACAACAAACTAATATGGAAGACAACTGAGAAGAGATCAAAGAAGCACTGACTTCAACGTGTCAAGAGGTTCTGAGTCGCAAGAAGCATCATCATAAGGAATGCATCTCCATGGAAACCCTGAACAAGATTGAAGAAAGAAAGGACGAGAAAATAGCAATTACCAAAGGTCGAACAAGAGCAGAGAACGTTAAGGCGCAAGCAGAGTACGGAGAACCAAACAAGGTATTGAAGAAGAGATTTAAAGCCGACAAGTGGAAATACATGGGCGAACTATCAACGAGAAGA] [+] EMBL CD118772 [ACAGATAGATCATATTTGTATCAAAAAAGATTCCAAAGGACCGTGGAGGATGTGAGAACCAGTAGAGGAGCTGGCATAGCTTCAGGTCACCACCTGATGGTCGCCAAGATCAAACTGAAGCTAAACAAACATTGGACAACTGTATAAACAGCAATACAAAGTTTCAATACAGCCTTCCTTCGAGATACCAACAACTAGTTGACGAATTCAGAATGACTCTCAGCAACAGGTTCCACGCTCTTGACACGGTCACATCTTGATACGAAGAGGAACAACAAACTAATATGGAAGACAACTGAGAAGAGATCAAAGAAGCACTGACTTCAACGTGTCAAGAGGTTCTGAGTCGCAAGAAGCATCATCATAAGGAATGCATCTCTATGGAAACCCTGAACAAGATTGAAGAAAGAAAGGACGAGAAAATAGCAATTACCAAAGGTCGAACAAGAGCAGAGAACGTCAAGGCGCAAGCAGAGTACGGAGAACCAAACAAGGTATTGAAGAAGAAATTTAA ] [-] EMBL CD149225 [ TCATATTTGTATCAAAAAAGATTCCAAAGCACCATGGAGGATGTGAGAACCAGTAGAGGAGCTGGCATAGCTTCAGGTCACCACNTGATGGTCGCCAAGATCAAACTGAAGCTAAACAAACATTGGACAACCGTATAAACAGCAATACAAAGTTTCAATACAGCCTTCCTTCGAGATACCAACAACTAGTTGACGAATT ] [+] EMBL CD152879 [ AAGAAGCACTGACTTCAACGTGTCAAGAGGTTCTGAGTCGCAAGAAGCATCATCATAAGGAATGCATCTCCATGGAAACCCTGAACAAGATTGAAGAAAGAAAGGACGAGAAAATAGCAATTACCAAAGGTCGAACAAGAGCAGAGAACGTTAAGGCGCAAGCAGAGTACGGAGAACCAAACAAGGTATTGAAGAAGAGATTTAAAGCCGACAAGTGGAAATACATGGGCGAACTATCAACGAGAAGA] [+] EMBL CD152582 [ AAGAAGCACTGACTTCAACGTGTCAAGAGGTTCTGAGTCGCAAGAAGCATCATCATAAGGAATGCATCTCCATGGAAACCCTGAACAAGATTGAAGAAAGAAAGGACGAGAAAATAGCAATTACCAAAGGTCGAACAAGAGCAGAGAACGTTAAGGCGCAAGCAGAGTACGGAGAACCAAACAAGGTATTGAAGAAGAGATTTAAAGCCGACAAGTG ] [+] EMBL CD152590 [ AAGAAGCACTGACTTCAACGTGTCAAAAGGTTCTGAGTCGCAAGAAGCATCATCATAAGGAATGCATCTCCATGGAAACCCTGAACAAGATTGAAGAAAGAAAGGACGAGAAAATAGCAATTACCAAAGGTCGAACAAGAGCAGAGAGCGTTAAGGCGCAAGCAGAG ] consensusID : consensus_9662#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence [GCGAGTGGAAACAACTGGAGAGGATTGTCCAGGACAGAGTTGGATAGAGAATGCTGGTGAGCGACCTATGCTCCTACACGAGGGGTAACAGGCTTAAGTATGTATGCATGTATGTATATATGTAACTTTTCCCATCATGAAGTCTGGGAGAAACAGTTTATTTGGTAACTGATTAAAACAGATATGATCTTACCAAATCAATATATCAGAGTGAAAGCCTAGAGATTTACGTAGTAAAGATGTTTTCTTATAATCTGACCGATCGGAATACTGTTTTGAACACTTTATTTTATAATTACACAATTCCATACTTCCTTCTGAAATACCTTCATTTATACAGTTCCTTATCCACTCATACCTTGCTCACACTTATTTTTCTTTAACGCATTAGTATGCTCTTACCTAATAAGTACTTCAGTAACAGACAAATAGACTAAATGATTATACCTTAACTATTCCTCCATGAATATTGTGTGCTCTGC] [+] EMBL CD167967 [GCGAGTGGAAACAACTGGAGAGGATTGTCCAGGACAGAGTTGGATAGAGAATGCTGGTGAGCGACCTATGCTCCTACACGAGGGGTAACAGGCTTAAGTATGTATGCATGTATGTATATATGTAACTTTTCCCATCATGAAGTCTGGGAGAAACAGTTTATTTGGTAACTGATTAAAACAGATATGATCTTACCAAATCAATATATCAGAGTGAAAGCCTAGAGATTTACGTAGTAAAGATGTTTTCTTATAATCTGACCGATCGGAATACTGTTTTGAACACTTTATTTTATAATTACACAATTCCATACTTCCTTCTGAAATACCTTCATTTATACAGTTCCTTATCCACTCATACCTTGCTCACACTTATTTTTCTTTAACGCATTAGTATGCTCTTACCTAATAAGTACTTCAGTAACAGACAAATAGACTAAATGATTATACCTTAACTATTCCTCCATGAATATTGTGTGCTCTGC] consensusID : consensus_9662#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 476 fasta sequence [AGAAGCACTGACTTCAACGTGTCAAGAGGTTCTGAGTCGCAAGAAGCATCATCATAAGGAATGCATCTCCATGGAAACCCTGAACAAGATTGAAGAAAGAAAGGACGAGAAAATAGCAATTACCAAAGGTCGAACAAGAGCAGAGAACGTTAAGGCGCAAGCAGAGTACGGAGAACCAAACAAGGTATTGAAGAAGAGATTTAAAGCCGACAAGTGGAAATACATGGGCGAACTAGGCTACATGGATCTGACCGGACCACACCACAGAGAAACAGATAGATCATATTTGCATCTAAAAAGATTCCAAAGGACCATGGAGGATGTGAGAACCAGTAGAGGAGCTGGCATAGCTTCAGGTCACCACCTGATGGTCGCCAAGATCAAACTGAAGCTATACAAACATTGGACAACTGTATAAACAGCAATACAAAGTTTCAATACATCCTTCCTTCGAGATACCAACAAGCTCAACGAAT] [+] EMBL CD149647 [AGAAGCACTGACTTCAACGTGTCAAGAGGTTCTGAGTCGCAAGAAGCATCATCATAAGGAATGCATCTCCATGGAAACCCTGAACAAGATTGAAGAAAGAAAGGACGAGAAAATAGCAATTACCAAAGGTCGAACAAGAGCAGAGAACGTTAAGGCGCAAGCAGAGTACGGAGAACCAAACAAGGTATTGAAGAAGAGATTTAAAGCCGACAAGTGGAAATACATGGGCGAACTAGGCTACATGGATCTGACCGGACCACACCACAGAGAAACAGATAGATCATATTTGCATCTAAAAAGATTCCAAAGGACCATGGAGGATGTGAGAACCAGTAGAGGAGCTGGCATAGCTTCAGGTCACCACCTGATGGTCGCCAAGATCAAACTGAAGCTATACAAACATTGGACAACTGTATAAACAGCAATACAAAGTTTCAATACATCCTTCCTTCGAGATACCAACAAGCTCAACGAAT] [-] EMBL CD152624 [AGAAGCACTGACTTCAACGTGTCAAGAGGTTCTGAGTCGCAAGAAGCATCATCATAAGGAATGCATCTCCATGGAAACCCTGAACAAGATTGAAGAAAGAAAGGACGAGAAAATAGCAATTACCAAAGGTCGAACAAGAGCAGATAACGTTAAGGCGCAAGCAGAGTACGGAGAACCGAACAAGGTATTGAATAAGAGATTTAAAGCCGACAAGTGGAAATACATGGGCGAACTAGc ] consensusID : consensus_9662#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 358 fasta sequence [TTCACAGCCACATTTGGCTGAATCTTGTGCAAATGTTAACTTCTATTTTATTGGTACGATGCCGTCTGTCTGTTTGGTAATATAAACTCAGTATGTTTGAAATATAATGATTCATACCGCAGAGGCTGTTCTGAACTTAACTGACTGAGCTAGGCAGAAAGCAGGACTGACAAGTGCTCTAAACTGCTCGTACGGATTTTGTGTGTCATTGGTCCGATCGATAATACACTGCTCTCTGATTGGCCGTCTTACCACGTCATACATTAACAGGGCATCCACTCGGCCACAAGATATAACAAATAGCAACTGGAAAGGATTGCTCAGGACAGAGTTGGATGGAGAATGCTGGTGAGCGGCC] [+] EMBL CD098051 [TTCACAGCCACATTTGGCTGAATCTTGTGCAAATGTTAACTTCTATTTTATTGGTACGATGCCGTCTGTCTGTTTGGTAATATAAACTCAGTATGTTTGAAATATAATGATTCATACCGCAGAGGCTGTTCTGAACTTAACTGACTGAGCTAGGCAGAAAGCAGGACTGACAAGTGCTCTAAACTGCTCGTACGGATTTTGTGTGTCATTGGTCCGATCGATAATACACTGCTCTCTGATTGGCCGTCTTACCACGTCATACATTAACAGGGCATCCACTCGGCCACAAGATATAACAAATAGCAACTGGAAAGGATTGCTCAGGACAGAGTTGGATGGAGAATGCTGGTGAGCGGCC] consensusID : consensus_9662#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 289 fasta sequence [GGTCACATTACAGAGAGTTAGATTGATCATATTTGCATCAGTAAAAAATCTACAAGGTCAATTGAAGACATGAGAACCAGGAGAGGAGCTGACATAGCTTCAGATCACCACCTGGTGGTCGACAGGATGAAACCGAAACTAAAGAAACACTAAAACTGGGGAAGCAGCATTACAAAGGTTCAATACAAGACAAGAAGACAGCAGTTAACAACAGCCGAACAGGAACAGAGAAAATCGAGGCACAAGCTGAATACACAAAAGCAAACAAGCGAGTGAAGAAGAGCATGAG] [+] EMBL CD169057 [GGTCACATTACAGAGAGTTAGATTGATCATATTTGCATCAGTAAAAAATCTACAAGGTCAATTGAAGACATGAGAACCAGGAGAGGAGCTGACATAGCTTCAGATCACCACCTGGTGGTCGACAGGATGAAACCGAAACTAAAGAAACACTAAAACTGGGGAAGCAGCATTACAAAGGTTCAATACAAGACAAGAAGACAGCAGTTAACAACAGCCGAACAGGAACAGAGAAAATCGAGGCACAAGCTGAATACACAAAAGCAAACAAGCGAGTGAAGAAGAGCATGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9662#2 AGAAGCACTGACTTCAACGTGTCAAGAGGTTCTGAGTCGCAAGAAGCATCATCATAAGGA 60 consensus_9662#4 ------------------------------------------------------------ consensus_9662#0 ------------------------------------------------------------ consensus_9662#3 ------------------------------------------------------------ consensus_9662#1 ------------------------------------------------------------ consensus_9662#2 ATGCATCTCCATGGAAACCCTGAACAAGATTGAAGAAAGAAAGGACGAGAAAATAGCAAT 120 consensus_9662#4 ------------------------------------------------------------ consensus_9662#0 ------------------------------------------------------------ consensus_9662#3 ------------------------------------------------------------ consensus_9662#1 ------------------------------------------------------------ consensus_9662#2 TACCAAAGGTCGAACAAGAGCAGAGAACGTTAAGGCGCAAGCAGAGTACGGAGAACCAAA 180 consensus_9662#4 ------------------------------------------------------------ consensus_9662#0 ------------------------------------------------------------ consensus_9662#3 ------------------------------------------------------------ consensus_9662#1 -----------------------------------------GCGAGTGGAAACAACTGGA 19 consensus_9662#2 CAAGGTATTGAAGAAGAGATTTAAAGCCGACAAGTGGAAATACATGGGCGAACTAGGCTA 240 consensus_9662#4 ------------------------------------------------------------ consensus_9662#0 ------------------------------------------------------------ consensus_9662#3 ------------------------------------------------------------ consensus_9662#1 GAGGATTGTCCAGGACAGAGTTGGATAGAGAATGCTGGTGAGCGACCTATGCTCCTACAC 79 consensus_9662#2 CATGGATCTGACCGGACCACACCACAGAGAAA-CAGATAGATCATATTTGCATCTAAAA- 298 consensus_9662#4 --------------GGTCACATTACAGAGAGT-TAGATTGATCATATTTGCATCAGTAA- 44 consensus_9662#0 -------------------------------A-CAGATAGATCATATTTGTATCAAAAA- 27 consensus_9662#3 -------TTCACAGCCACATTTGGCTGAATCT-TGTGCAAATGTTAACTTCTATTTTAT- 51 consensus_9662#1 GAGGGGTAACAGGCTTAAGTATGTATGCATGTATGTATATATGTAACTTTTCCCATCATG 139 ** * * * consensus_9662#2 AGATTCCA-AAGGACCATGGAGGATGTGAG------AACCAGTAGAGGAGCTGGCATAGC 351 consensus_9662#4 AAAATCTACAAGGTCAATTGAAGACATGAG------AACCAGGAGAGGAGCTGACATAGC 98 consensus_9662#0 AGATTCCA-AAGGACCGTGGAGGATGTGAG------AACCAGTAGAGGAGCTGGCATAGC 80 consensus_9662#3 TGGTACGATGCCGTCTGTCTGTTTGGTAAT------ATAAACTCAGTATGTTTGAAATAT 105 consensus_9662#1 AAGTCTGGGAGAAACAGTTTATTTGGTAACTGATTAAAACAGATATGATCTTACCAAATC 199 * * * * * * * * consensus_9662#2 TTCAGGTCACCACCTGATGGTCGC-CAAGATCAAACTGA---AGCTATACAAACATTGG- 406 consensus_9662#4 TTCAGATCACCACCTGGTGGTCGA-CAGGATGAAACCGA---AACTAAAGAAACACTAA- 153 consensus_9662#0 TTCAGGTCACCACCTGATGGTCGC-CAAGATCAAACTGA---AGCTAAACAAACATTGG- 135 consensus_9662#3 AATGATTCATACCGCAGAGGCTGTTCTGAACTTAACTGACTGAGCTAGGCAGAAAGCAGG 165 consensus_9662#1 AATATATCAGAGTGAAAGCCTAGAGATTTACGTAGTAAAGATGTTTTCTTATAATCTGAC 259 *** * * * * * * * consensus_9662#2 -------ACAACTG-TATAAAC--AGCAATACAAAGTTTCAATACATCCTTCCTTCG-AG 455 consensus_9662#4 -------A--ACTG-GGGAAGC--AGCATTACAAAGGTTCAATACAAGACAAGAAGACAG 201 consensus_9662#0 -------ACAACTG-TATAAAC--AGCAATACAAAGTTTCAATACAGCCTTCCTTCG-AG 184 consensus_9662#3 A---CTGACAAGTGCTCTAAAC--TGC-TCGTACGGATTTTGTGTGTCATTGGTCCG-AT 218 consensus_9662#1 CGATCGGAATACTGTTTTGAACACTTTATTTTATAATTACACAATTCCATACTTCCTTCT 319 * * ** * * * * consensus_9662#2 ATACCAACAA--GCTCAACGAAT------------------------------------- 476 consensus_9662#4 CAGTTAACAACAGCCGAACAGGAACAGAGAAAATCGAGGCACAAGCTGAATACACAAAAG 261 consensus_9662#0 ATACCAACAACTAGTTGACGAATTCAGAATGACTCTCAGCAACAGGTTCCACGCTCTTGA 244 consensus_9662#3 CGATAATACACTGCTCTCTGATTGGCCGTCTTACCACGTCATACATTAACAGGGCATCCA 278 consensus_9662#1 GAAATACCTTCATTTATACAGTTCCTTATCCACTCATACCTTGCTCACACTTATTTTTCT 379 * consensus_9662#2 ------------------------------------------------------------ consensus_9662#4 CAAACAAGCGAGTGAAGAAGAGCATGAG-------------------------------- 289 consensus_9662#0 CACGGTCACATCTTGATACGAAGAGGAACAACAAACTAATATGGAAGACAACTGAGAAGA 304 consensus_9662#3 CTCGGCCACAAGATATAACAAATAGCAACTGGAAAGGATTGCTCAGGACAGAGTTGGATG 338 consensus_9662#1 TTAACGCATTAGTATGCTCTTACCTAATAAGTACTTCAGTAACAGACAAATAGACTAAAT 439 consensus_9662#2 ------------------------------------------------------------ consensus_9662#4 ------------------------------------------------------------ consensus_9662#0 GATCAAAGAAGCACTGACTTCAACGTGTCAAGAGGTTCTGAGTCGCAAGAAGCATCATCA 364 consensus_9662#3 GAGAATGCTGGTGAGCGGCC---------------------------------------- 358 consensus_9662#1 GATTATACCTTAACTATTCCTCCATGAATATTGTGTGCTCTGC----------------- 482 consensus_9662#2 ------------------------------------------------------------ consensus_9662#4 ------------------------------------------------------------ consensus_9662#0 TAAGGAATGCATCTCCATGGAAACCCTGAACAAGATTGAAGAAAGAAAGGACGAGAAAAT 424 consensus_9662#3 ------------------------------------------------------------ consensus_9662#1 ------------------------------------------------------------ consensus_9662#2 ------------------------------------------------------------ consensus_9662#4 ------------------------------------------------------------ consensus_9662#0 AGCAATTACCAAAGGTCGAACAAGAGCAGAGAACGTTAAGGCGCAAGCAGAGTACGGAGA 484 consensus_9662#3 ------------------------------------------------------------ consensus_9662#1 ------------------------------------------------------------ consensus_9662#2 ------------------------------------------------------------ consensus_9662#4 ------------------------------------------------------------ consensus_9662#0 ACCAAACAAGGTATTGAAGAAGAGATTTAAAGCCGACAAGTGGAAATACATGGGCGAACT 544 consensus_9662#3 ------------------------------------------------------------ consensus_9662#1 ------------------------------------------------------------ consensus_9662#2 ------------- consensus_9662#4 ------------- consensus_9662#0 ATCAACGAGAAGA 557 consensus_9662#3 ------------- consensus_9662#1 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||