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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9662#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 557 fasta sequence
[ACAGATAGATCATATTTGTATCAAAAAAGATTCCAAAGGACCGTGGAGGATGTGAGAACCAGTAGAGGAGCTGGCATAGCTTCAGGTCACCACCTGATGGTCGCCAAGATCAAACTGAAGCTAAACAAACATTGGACAACTGTATAAACAGCAATACAAAGTTTCAATACAGCCTTCCTTCGAGATACCAACAACTAGTTGACGAATTCAGAATGACTCTCAGCAACAGGTTCCACGCTCTTGACACGGTCACATCTTGATACGAAGAGGAACAACAAACTAATATGGAAGACAACTGAGAAGAGATCAAAGAAGCACTGACTTCAACGTGTCAAGAGGTTCTGAGTCGCAAGAAGCATCATCATAAGGAATGCATCTCCATGGAAACCCTGAACAAGATTGAAGAAAGAAAGGACGAGAAAATAGCAATTACCAAAGGTCGAACAAGAGCAGAGAACGTTAAGGCGCAAGCAGAGTACGGAGAACCAAACAAGGTATTGAAGAAGAGATTTAAAGCCGACAAGTGGAAATACATGGGCGAACTATCAACGAGAAGA]
[+] EMBL CD118772 [ACAGATAGATCATATTTGTATCAAAAAAGATTCCAAAGGACCGTGGAGGATGTGAGAACCAGTAGAGGAGCTGGCATAGCTTCAGGTCACCACCTGATGGTCGCCAAGATCAAACTGAAGCTAAACAAACATTGGACAACTGTATAAACAGCAATACAAAGTTTCAATACAGCCTTCCTTCGAGATACCAACAACTAGTTGACGAATTCAGAATGACTCTCAGCAACAGGTTCCACGCTCTTGACACGGTCACATCTTGATACGAAGAGGAACAACAAACTAATATGGAAGACAACTGAGAAGAGATCAAAGAAGCACTGACTTCAACGTGTCAAGAGGTTCTGAGTCGCAAGAAGCATCATCATAAGGAATGCATCTCTATGGAAACCCTGAACAAGATTGAAGAAAGAAAGGACGAGAAAATAGCAATTACCAAAGGTCGAACAAGAGCAGAGAACGTCAAGGCGCAAGCAGAGTACGGAGAACCAAACAAGGTATTGAAGAAGAAATTTAA ]
[-] EMBL CD149225 [ TCATATTTGTATCAAAAAAGATTCCAAAGCACCATGGAGGATGTGAGAACCAGTAGAGGAGCTGGCATAGCTTCAGGTCACCACNTGATGGTCGCCAAGATCAAACTGAAGCTAAACAAACATTGGACAACCGTATAAACAGCAATACAAAGTTTCAATACAGCCTTCCTTCGAGATACCAACAACTAGTTGACGAATT ]
[+] EMBL CD152879 [ AAGAAGCACTGACTTCAACGTGTCAAGAGGTTCTGAGTCGCAAGAAGCATCATCATAAGGAATGCATCTCCATGGAAACCCTGAACAAGATTGAAGAAAGAAAGGACGAGAAAATAGCAATTACCAAAGGTCGAACAAGAGCAGAGAACGTTAAGGCGCAAGCAGAGTACGGAGAACCAAACAAGGTATTGAAGAAGAGATTTAAAGCCGACAAGTGGAAATACATGGGCGAACTATCAACGAGAAGA]
[+] EMBL CD152582 [ AAGAAGCACTGACTTCAACGTGTCAAGAGGTTCTGAGTCGCAAGAAGCATCATCATAAGGAATGCATCTCCATGGAAACCCTGAACAAGATTGAAGAAAGAAAGGACGAGAAAATAGCAATTACCAAAGGTCGAACAAGAGCAGAGAACGTTAAGGCGCAAGCAGAGTACGGAGAACCAAACAAGGTATTGAAGAAGAGATTTAAAGCCGACAAGTG ]
[+] EMBL CD152590 [ AAGAAGCACTGACTTCAACGTGTCAAAAGGTTCTGAGTCGCAAGAAGCATCATCATAAGGAATGCATCTCCATGGAAACCCTGAACAAGATTGAAGAAAGAAAGGACGAGAAAATAGCAATTACCAAAGGTCGAACAAGAGCAGAGAGCGTTAAGGCGCAAGCAGAG ]
consensusID : consensus_9662#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence
[GCGAGTGGAAACAACTGGAGAGGATTGTCCAGGACAGAGTTGGATAGAGAATGCTGGTGAGCGACCTATGCTCCTACACGAGGGGTAACAGGCTTAAGTATGTATGCATGTATGTATATATGTAACTTTTCCCATCATGAAGTCTGGGAGAAACAGTTTATTTGGTAACTGATTAAAACAGATATGATCTTACCAAATCAATATATCAGAGTGAAAGCCTAGAGATTTACGTAGTAAAGATGTTTTCTTATAATCTGACCGATCGGAATACTGTTTTGAACACTTTATTTTATAATTACACAATTCCATACTTCCTTCTGAAATACCTTCATTTATACAGTTCCTTATCCACTCATACCTTGCTCACACTTATTTTTCTTTAACGCATTAGTATGCTCTTACCTAATAAGTACTTCAGTAACAGACAAATAGACTAAATGATTATACCTTAACTATTCCTCCATGAATATTGTGTGCTCTGC]
[+] EMBL CD167967 [GCGAGTGGAAACAACTGGAGAGGATTGTCCAGGACAGAGTTGGATAGAGAATGCTGGTGAGCGACCTATGCTCCTACACGAGGGGTAACAGGCTTAAGTATGTATGCATGTATGTATATATGTAACTTTTCCCATCATGAAGTCTGGGAGAAACAGTTTATTTGGTAACTGATTAAAACAGATATGATCTTACCAAATCAATATATCAGAGTGAAAGCCTAGAGATTTACGTAGTAAAGATGTTTTCTTATAATCTGACCGATCGGAATACTGTTTTGAACACTTTATTTTATAATTACACAATTCCATACTTCCTTCTGAAATACCTTCATTTATACAGTTCCTTATCCACTCATACCTTGCTCACACTTATTTTTCTTTAACGCATTAGTATGCTCTTACCTAATAAGTACTTCAGTAACAGACAAATAGACTAAATGATTATACCTTAACTATTCCTCCATGAATATTGTGTGCTCTGC]
consensusID : consensus_9662#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 476 fasta sequence
[AGAAGCACTGACTTCAACGTGTCAAGAGGTTCTGAGTCGCAAGAAGCATCATCATAAGGAATGCATCTCCATGGAAACCCTGAACAAGATTGAAGAAAGAAAGGACGAGAAAATAGCAATTACCAAAGGTCGAACAAGAGCAGAGAACGTTAAGGCGCAAGCAGAGTACGGAGAACCAAACAAGGTATTGAAGAAGAGATTTAAAGCCGACAAGTGGAAATACATGGGCGAACTAGGCTACATGGATCTGACCGGACCACACCACAGAGAAACAGATAGATCATATTTGCATCTAAAAAGATTCCAAAGGACCATGGAGGATGTGAGAACCAGTAGAGGAGCTGGCATAGCTTCAGGTCACCACCTGATGGTCGCCAAGATCAAACTGAAGCTATACAAACATTGGACAACTGTATAAACAGCAATACAAAGTTTCAATACATCCTTCCTTCGAGATACCAACAAGCTCAACGAAT]
[+] EMBL CD149647 [AGAAGCACTGACTTCAACGTGTCAAGAGGTTCTGAGTCGCAAGAAGCATCATCATAAGGAATGCATCTCCATGGAAACCCTGAACAAGATTGAAGAAAGAAAGGACGAGAAAATAGCAATTACCAAAGGTCGAACAAGAGCAGAGAACGTTAAGGCGCAAGCAGAGTACGGAGAACCAAACAAGGTATTGAAGAAGAGATTTAAAGCCGACAAGTGGAAATACATGGGCGAACTAGGCTACATGGATCTGACCGGACCACACCACAGAGAAACAGATAGATCATATTTGCATCTAAAAAGATTCCAAAGGACCATGGAGGATGTGAGAACCAGTAGAGGAGCTGGCATAGCTTCAGGTCACCACCTGATGGTCGCCAAGATCAAACTGAAGCTATACAAACATTGGACAACTGTATAAACAGCAATACAAAGTTTCAATACATCCTTCCTTCGAGATACCAACAAGCTCAACGAAT]
[-] EMBL CD152624 [AGAAGCACTGACTTCAACGTGTCAAGAGGTTCTGAGTCGCAAGAAGCATCATCATAAGGAATGCATCTCCATGGAAACCCTGAACAAGATTGAAGAAAGAAAGGACGAGAAAATAGCAATTACCAAAGGTCGAACAAGAGCAGATAACGTTAAGGCGCAAGCAGAGTACGGAGAACCGAACAAGGTATTGAATAAGAGATTTAAAGCCGACAAGTGGAAATACATGGGCGAACTAGc ]
consensusID : consensus_9662#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 358 fasta sequence
[TTCACAGCCACATTTGGCTGAATCTTGTGCAAATGTTAACTTCTATTTTATTGGTACGATGCCGTCTGTCTGTTTGGTAATATAAACTCAGTATGTTTGAAATATAATGATTCATACCGCAGAGGCTGTTCTGAACTTAACTGACTGAGCTAGGCAGAAAGCAGGACTGACAAGTGCTCTAAACTGCTCGTACGGATTTTGTGTGTCATTGGTCCGATCGATAATACACTGCTCTCTGATTGGCCGTCTTACCACGTCATACATTAACAGGGCATCCACTCGGCCACAAGATATAACAAATAGCAACTGGAAAGGATTGCTCAGGACAGAGTTGGATGGAGAATGCTGGTGAGCGGCC]
[+] EMBL CD098051 [TTCACAGCCACATTTGGCTGAATCTTGTGCAAATGTTAACTTCTATTTTATTGGTACGATGCCGTCTGTCTGTTTGGTAATATAAACTCAGTATGTTTGAAATATAATGATTCATACCGCAGAGGCTGTTCTGAACTTAACTGACTGAGCTAGGCAGAAAGCAGGACTGACAAGTGCTCTAAACTGCTCGTACGGATTTTGTGTGTCATTGGTCCGATCGATAATACACTGCTCTCTGATTGGCCGTCTTACCACGTCATACATTAACAGGGCATCCACTCGGCCACAAGATATAACAAATAGCAACTGGAAAGGATTGCTCAGGACAGAGTTGGATGGAGAATGCTGGTGAGCGGCC]
consensusID : consensus_9662#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 289 fasta sequence
[GGTCACATTACAGAGAGTTAGATTGATCATATTTGCATCAGTAAAAAATCTACAAGGTCAATTGAAGACATGAGAACCAGGAGAGGAGCTGACATAGCTTCAGATCACCACCTGGTGGTCGACAGGATGAAACCGAAACTAAAGAAACACTAAAACTGGGGAAGCAGCATTACAAAGGTTCAATACAAGACAAGAAGACAGCAGTTAACAACAGCCGAACAGGAACAGAGAAAATCGAGGCACAAGCTGAATACACAAAAGCAAACAAGCGAGTGAAGAAGAGCATGAG]
[+] EMBL CD169057 [GGTCACATTACAGAGAGTTAGATTGATCATATTTGCATCAGTAAAAAATCTACAAGGTCAATTGAAGACATGAGAACCAGGAGAGGAGCTGACATAGCTTCAGATCACCACCTGGTGGTCGACAGGATGAAACCGAAACTAAAGAAACACTAAAACTGGGGAAGCAGCATTACAAAGGTTCAATACAAGACAAGAAGACAGCAGTTAACAACAGCCGAACAGGAACAGAGAAAATCGAGGCACAAGCTGAATACACAAAAGCAAACAAGCGAGTGAAGAAGAGCATGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9662#2 AGAAGCACTGACTTCAACGTGTCAAGAGGTTCTGAGTCGCAAGAAGCATCATCATAAGGA 60
consensus_9662#4 ------------------------------------------------------------
consensus_9662#0 ------------------------------------------------------------
consensus_9662#3 ------------------------------------------------------------
consensus_9662#1 ------------------------------------------------------------
consensus_9662#2 ATGCATCTCCATGGAAACCCTGAACAAGATTGAAGAAAGAAAGGACGAGAAAATAGCAAT 120
consensus_9662#4 ------------------------------------------------------------
consensus_9662#0 ------------------------------------------------------------
consensus_9662#3 ------------------------------------------------------------
consensus_9662#1 ------------------------------------------------------------
consensus_9662#2 TACCAAAGGTCGAACAAGAGCAGAGAACGTTAAGGCGCAAGCAGAGTACGGAGAACCAAA 180
consensus_9662#4 ------------------------------------------------------------
consensus_9662#0 ------------------------------------------------------------
consensus_9662#3 ------------------------------------------------------------
consensus_9662#1 -----------------------------------------GCGAGTGGAAACAACTGGA 19
consensus_9662#2 CAAGGTATTGAAGAAGAGATTTAAAGCCGACAAGTGGAAATACATGGGCGAACTAGGCTA 240
consensus_9662#4 ------------------------------------------------------------
consensus_9662#0 ------------------------------------------------------------
consensus_9662#3 ------------------------------------------------------------
consensus_9662#1 GAGGATTGTCCAGGACAGAGTTGGATAGAGAATGCTGGTGAGCGACCTATGCTCCTACAC 79
consensus_9662#2 CATGGATCTGACCGGACCACACCACAGAGAAA-CAGATAGATCATATTTGCATCTAAAA- 298
consensus_9662#4 --------------GGTCACATTACAGAGAGT-TAGATTGATCATATTTGCATCAGTAA- 44
consensus_9662#0 -------------------------------A-CAGATAGATCATATTTGTATCAAAAA- 27
consensus_9662#3 -------TTCACAGCCACATTTGGCTGAATCT-TGTGCAAATGTTAACTTCTATTTTAT- 51
consensus_9662#1 GAGGGGTAACAGGCTTAAGTATGTATGCATGTATGTATATATGTAACTTTTCCCATCATG 139
** * * *
consensus_9662#2 AGATTCCA-AAGGACCATGGAGGATGTGAG------AACCAGTAGAGGAGCTGGCATAGC 351
consensus_9662#4 AAAATCTACAAGGTCAATTGAAGACATGAG------AACCAGGAGAGGAGCTGACATAGC 98
consensus_9662#0 AGATTCCA-AAGGACCGTGGAGGATGTGAG------AACCAGTAGAGGAGCTGGCATAGC 80
consensus_9662#3 TGGTACGATGCCGTCTGTCTGTTTGGTAAT------ATAAACTCAGTATGTTTGAAATAT 105
consensus_9662#1 AAGTCTGGGAGAAACAGTTTATTTGGTAACTGATTAAAACAGATATGATCTTACCAAATC 199
* * * * * * * *
consensus_9662#2 TTCAGGTCACCACCTGATGGTCGC-CAAGATCAAACTGA---AGCTATACAAACATTGG- 406
consensus_9662#4 TTCAGATCACCACCTGGTGGTCGA-CAGGATGAAACCGA---AACTAAAGAAACACTAA- 153
consensus_9662#0 TTCAGGTCACCACCTGATGGTCGC-CAAGATCAAACTGA---AGCTAAACAAACATTGG- 135
consensus_9662#3 AATGATTCATACCGCAGAGGCTGTTCTGAACTTAACTGACTGAGCTAGGCAGAAAGCAGG 165
consensus_9662#1 AATATATCAGAGTGAAAGCCTAGAGATTTACGTAGTAAAGATGTTTTCTTATAATCTGAC 259
*** * * * * * * *
consensus_9662#2 -------ACAACTG-TATAAAC--AGCAATACAAAGTTTCAATACATCCTTCCTTCG-AG 455
consensus_9662#4 -------A--ACTG-GGGAAGC--AGCATTACAAAGGTTCAATACAAGACAAGAAGACAG 201
consensus_9662#0 -------ACAACTG-TATAAAC--AGCAATACAAAGTTTCAATACAGCCTTCCTTCG-AG 184
consensus_9662#3 A---CTGACAAGTGCTCTAAAC--TGC-TCGTACGGATTTTGTGTGTCATTGGTCCG-AT 218
consensus_9662#1 CGATCGGAATACTGTTTTGAACACTTTATTTTATAATTACACAATTCCATACTTCCTTCT 319
* * ** * * * *
consensus_9662#2 ATACCAACAA--GCTCAACGAAT------------------------------------- 476
consensus_9662#4 CAGTTAACAACAGCCGAACAGGAACAGAGAAAATCGAGGCACAAGCTGAATACACAAAAG 261
consensus_9662#0 ATACCAACAACTAGTTGACGAATTCAGAATGACTCTCAGCAACAGGTTCCACGCTCTTGA 244
consensus_9662#3 CGATAATACACTGCTCTCTGATTGGCCGTCTTACCACGTCATACATTAACAGGGCATCCA 278
consensus_9662#1 GAAATACCTTCATTTATACAGTTCCTTATCCACTCATACCTTGCTCACACTTATTTTTCT 379
*
consensus_9662#2 ------------------------------------------------------------
consensus_9662#4 CAAACAAGCGAGTGAAGAAGAGCATGAG-------------------------------- 289
consensus_9662#0 CACGGTCACATCTTGATACGAAGAGGAACAACAAACTAATATGGAAGACAACTGAGAAGA 304
consensus_9662#3 CTCGGCCACAAGATATAACAAATAGCAACTGGAAAGGATTGCTCAGGACAGAGTTGGATG 338
consensus_9662#1 TTAACGCATTAGTATGCTCTTACCTAATAAGTACTTCAGTAACAGACAAATAGACTAAAT 439
consensus_9662#2 ------------------------------------------------------------
consensus_9662#4 ------------------------------------------------------------
consensus_9662#0 GATCAAAGAAGCACTGACTTCAACGTGTCAAGAGGTTCTGAGTCGCAAGAAGCATCATCA 364
consensus_9662#3 GAGAATGCTGGTGAGCGGCC---------------------------------------- 358
consensus_9662#1 GATTATACCTTAACTATTCCTCCATGAATATTGTGTGCTCTGC----------------- 482
consensus_9662#2 ------------------------------------------------------------
consensus_9662#4 ------------------------------------------------------------
consensus_9662#0 TAAGGAATGCATCTCCATGGAAACCCTGAACAAGATTGAAGAAAGAAAGGACGAGAAAAT 424
consensus_9662#3 ------------------------------------------------------------
consensus_9662#1 ------------------------------------------------------------
consensus_9662#2 ------------------------------------------------------------
consensus_9662#4 ------------------------------------------------------------
consensus_9662#0 AGCAATTACCAAAGGTCGAACAAGAGCAGAGAACGTTAAGGCGCAAGCAGAGTACGGAGA 484
consensus_9662#3 ------------------------------------------------------------
consensus_9662#1 ------------------------------------------------------------
consensus_9662#2 ------------------------------------------------------------
consensus_9662#4 ------------------------------------------------------------
consensus_9662#0 ACCAAACAAGGTATTGAAGAAGAGATTTAAAGCCGACAAGTGGAAATACATGGGCGAACT 544
consensus_9662#3 ------------------------------------------------------------
consensus_9662#1 ------------------------------------------------------------
consensus_9662#2 -------------
consensus_9662#4 -------------
consensus_9662#0 ATCAACGAGAAGA 557
consensus_9662#3 -------------
consensus_9662#1 -------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||