cluster # 9663

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 9663 cluster # 9663 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9663#0 length = 752 sequences # 5

consensus_9663#1 length = 691 sequences # 5

consensusID : consensus_9663#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 752
fasta sequence

                              [CTCCGAGCCAANAATTCGGCACGAGGACAGATCTGAAACCATCTCACTAAGATGTTTCTTTAATGGGAAATTCTGGAACCTGTTTAAACGATTGCCTCGACGTCTATGCTCCTGAGAAAGTTCTTTTTGCCATAAGCTTTTGTACTGTACTTTTGGGTTTCGTTCTTATTATTTCAGGGGTTTGTATTGCTCAGCTTAGTGAGGGACTGCATGCTCATTTGTCCATATCATATGCAGCTGTACCTATTGCGTTTGCTGGCTGTGTTACACTACTAATAGCCATTTTTAGGATTGTTTCTACAAGTAGACGTTTAAGGGAAATGAATTTAACCCTTTGTGAGTTTGAAAAACAATGGAATCAAGAAGAGTCTCTGTCCTACAATCTTCAAGGAAACGCATATAATGCATTTTCTTTTG-TTAATAAATCCCCTGACAATTTTAGCCCTAACTCACTTTCGGATAAGAAAGTTGATCATCTACCCATACCTGTAACAAACTATCATCAAAGATTGCCAATGCCTCCAAGACGAGCTGTTTTGTATTAAGCCAACTCAACTTTTAATGTAACACTGATTTAAGAGTTCTCTGTATGTTAAACAACTTTTATTTCAAGTTTCATTATTTCTATTGCCATAATCCGTTTTAGAATTTTATGTGGTGGCACTGAGACATTATTGTGCATGCACTGTTCCCCAACTCCCAAATTTGTGTTAT-ATTAACCCACCAGTGATAATTTGGTTGAATAAAGTAAA]

[+] EMBL CD081369             [CTCCGAGCCAANAATTCGGCACGAGGACAGATCTGAAACCATCTCACTAAGATGTTTCTTTAATGGGAAATTCTGGAACCTGTTTAAACGATTGCCTCGACGTCTATGCTCCTGAGAAAGTTCTTTTTGCCATAAGCTTTTGTACTGTACTTTTGGGTTTCGTTCTTATTATTTCAGGGGTTTGTATTGCTCAGCTTAGTGAGGGACTGCATGCTCATTTGTCCATATCATATGCAGCTGTACCTATTGCGTTTGCTGGCTGTGTTACACTACTAATAGCCATTTTTAGGATTGTTTCTACAAGTAGACGTTTAAGGGAAATGAATTTAACCCTTTGTGAGTTTGAAAAACAATGGAATCAAGAAGAGTCTCTGTCCTACAATCTTCAAGGAAACGCATATAATGCATTTTCTTTTG TTAATAAATCCCCTGACAATTTTAGCCCTAACTCACTTTCGGATAAGAAAGTTGATCATCTACCCATACCTGTAACAAACTATCATCAAAGATTGCCAATGCCTCCAAGACGAGCTGTTTTGTATTAAGCCAACTCAACTTTTAATGTAACACTGATTTAAGAGTTCTCTGTATGTTAAACAACTTTTATTTCAAGTTTCATTATTTCTATTGCCATAATCCGTTTTAG ATTTTATGTGGTGGCACTGAGACATTATTGTGCATGCACTGTTCCCCAACTCCCAAATTTGTGTTAT ATTAACCCACCAGTGATAATTTGGTTGAATAAAGTAA ]
[-] EMBL CD075203             [                                                                                                                                      AGCTTTTGTACTGTACTTNTGGGTTTCGTTCTTATTATTTCAGGGGTTTGTATTGCTCAGCTTAGTGAGGGACTGCATGCTCATTTGTCCATATCATATGCAGCTGTACCTATTGCGTTTGCTGGCTGTGTTACACTACTAATAGCCATTTTTAGGATTGTTTCTACAAGTAGACGTTTAAGGGAAATGAATTTAACCCTTTGTGAGTTTGAAAAACAATGGAATCAAGAAGAGTCTCTGTCCTACAATCTTCAAGGAAACGCATATAATGCATTTTCTTTTG TTAATAAATCCCCTGACAATTTTAGCCCTAACTCACTTTCGGATAAGAAAGTTGATCATCTACCCATACCTGTAACAAACTATCATCAAAGATTGCCAATGCCTCCAAGACGAGCTGTTTTGTATTAAGCCAACTCAACTTTTAATGTAACACTGATTTAAGAGTTCTCTGTATGTTAAACAACTTTTATTTCAAGTTTCATTATTTCTATTGCCATAATCCGTTTTAGAATTTTATGTGGTGGCACTGAGACATTATTGTGCATGCACTGTTCCCAAACTTCCAAATTTGTGTTATAATTAACCCACCAGTGATAATTTGGTTGAATAAAGTAAA]
[-] EMBL CD069163             [                                                                                                                                                                                                                                                                              TACTAATAGCCATTTTTAGGATTGTTTCTACAAGTAGACGTTTAAGGGAAATGAATTTAACCCTTTGTGAGTTTGAAAAACAATGGAATCAAGAAGAGTCTCTGTCCTACAATCTTCAAGGAAACGCATATAATGCATTTTCTTTTG TTAATAAATCCCCTGACAATTTTAGCCCTAACTCACTTTCGGATAAGAAAGTTGATCATCTACCCATACCTGTAACAAACTATCATCAAAGATTGCCAATGCCTCCAAGACGAGCTGTTTTGTATTAAGCCAACTCAACTTTTAATGTAACACTGATTTAAGAGTTCTCTGTATGTTAAACAACTTTTATTTCAAGTTTCATTATTTCTATTGCCATAATCCGTCTTAGAATTTT                                                                                                     ]
[+] EMBL CD146048             [                                                                                                                                                                                                                                                                                                                                                                                                        AACGTTTTTACCGCATTTTCTTTTGATTAATAAATCCCCTGACAATTTTAGCCCTAACTCACTTTCGGATAAGAAAGTTGATCATCTACCCATACCTGTAACAAACTATCATCAAAGATTGCCAATGCCTCCAAGACGAGCTGTTTTGTATTAAGCCAACTCAACTTTTAATGTAACACTGATTTAAGAGTTCTCTGTATGTTAAACAACTTTTATTTCAAGTTTCATTATTTCTATTGCCATAATCCGTTTTAGAATTTTATGTGGTGGCACTGAGACAT                                                                                 ]
[-] EMBL CD154874             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGCTGTTTTGTATTAAGCCAACTCAACTTTTAACGTAACACTGATTTAAGAGTTCTCTGTATGTTAAACAACTTTTATTTCAAGTTTCATTATTTCTATTGCCATAATCCGTTTTAGAATTTTATGTGGTGGCACTGAGACATT                                                                                ]




>consensus_9663#0
CTCCGAGCCAANAATTCGGCACGAGGACAGATCTGAAACCATCTCACTAAGATGTTTCTT
TAATGGGAAATTCTGGAACCTGTTTAAACGATTGCCTCGACGTCTATGCTCCTGAGAAAG
TTCTTTTTGCCATAAGCTTTTGTACTGTACTTTTGGGTTTCGTTCTTATTATTTCAGGGG
TTTGTATTGCTCAGCTTAGTGAGGGACTGCATGCTCATTTGTCCATATCATATGCAGCTG
TACCTATTGCGTTTGCTGGCTGTGTTACACTACTAATAGCCATTTTTAGGATTGTTTCTA
CAAGTAGACGTTTAAGGGAAATGAATTTAACCCTTTGTGAGTTTGAAAAACAATGGAATC
AAGAAGAGTCTCTGTCCTACAATCTTCAAGGAAACGCATATAATGCATTTTCTTTTGTTA
ATAAATCCCCTGACAATTTTAGCCCTAACTCACTTTCGGATAAGAAAGTTGATCATCTAC
CCATACCTGTAACAAACTATCATCAAAGATTGCCAATGCCTCCAAGACGAGCTGTTTTGT
ATTAAGCCAACTCAACTTTTAATGTAACACTGATTTAAGAGTTCTCTGTATGTTAAACAA
CTTTTATTTCAAGTTTCATTATTTCTATTGCCATAATCCGTTTTAGAATTTTATGTGGTG
GCACTGAGACATTATTGTGCATGCACTGTTCCCCAACTCCCAAATTTGTGTTATATTAAC
CCACCAGTGATAATTTGGTTGAATAAAGTAAA

consensusID : consensus_9663#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 691
fasta sequence

                              [CGAGGCCACGAATTCGGCACGAGGTTTTTCATTCATGGCCTTCTCGTTCCTCGTTTAGCTTCAATCGTAGAGATGAATGCAGAAACCTCTCAACCAGTTGTCGAAATCAAAAGCCTAATAACTGGTCTTTGTGTTCTATGAACAACAAACCAAATCCCGTTCTACTCTGCTGGCCGACTGATGTTCAAATACACCCTTATCACATAAGAATATGTCTGGACACTCATATTGCTGTTTTTGTTTACAAAGTACCTAGCAGTATCATTCTTTATCAGGCAAGAAAGATAATTTATTCAAGCAACATATGCATCCCGTATTTTTGAAAGCTAAGCTTTACATTCAAGCGTTTACTTCAAAGTCTAATTAGTGGATCTTGAAAGAATTATTTCAGAAAGTAATTAGTATTTGGCGAACCTGACACTATCATTAATCTCCATCGTCAAGTGTATACATTTATGGTCTCTGTGTTTTTGTACTTATTTCTGTTCACTAGCTTTTTCTCGTATTCACATCACGTATTTCTACTACATTTACTAATTTAGATCTGAAACCATCTCACTAAGATGTTTCTTTAATGGGAAATTCTGGAACCTGTTTAAACGATTGCCCCGGCGTCTATGCTCCTGAG-AAGTTCTTTTTGCCATAAGCTTTTGTACTGTACTTTTGGGTTTCGTTCTTATTATTTCAGGNG]

[+] EMBL CD083728             [CGAGGCCACGAATTCGGCACGAGGTTTTTCATTCATGGCCTTCTCGTTCCTCGTTTAGCTTCAACTTTCGATATGAATGCAGAAACCTCTCAACCAGTTGTCGAAATCAAAAGCCTAATAACTGGTCTTTGTGTTCTATGAACAACAAACCAAATCCCGTTCTACTCTGCTGGCCGACTGATGTTCAAATACACCCTTATCACATAAGAATATGTCTGGACACTCATATTGCTGTTTTTGTTTACAAAGTACCTAGCAGTATCATTCTTTATCAGGCAAGAAAGATAATTTATTCAAGCAACATATGCATCCCGTATTTTTGAAAGCTAAGCTTTACATTCAAGCGTTTACTTCAAAGTCTAATTAGTGGATCTTGAAAGAATTATTTCAGAAAGTAATTAGTATTTGGCGAACCTGACACTATCATTAATCTCCATCGT                                                                                                                                                                                                                                                            ]
[+] EMBL CD117504             [                                                                TCGTAGAGATGAATGCAGAAACCTCTCAACCAGTTGTCGAAATCAAAAGCCTAATAACTGGTCTTTGTGTTCTATGAACAACAAACCAAATCCCGTTCTACTCTGCTGGCCGACTGATGTTCAAATACACCCTTATCACATAAGAATATGTCTGGACACTCATATTGCTGTTTTTGTTTACAAAGTACCTAGCAGTATCATTCTTTATCAGGCAAGAAAGATAATTTATTCAAGCAACATATGCATCCCGTATTTTTGAAAGCTAAGCTTTACATTCAAGCGTTTACTTCAAAGTCTAATTAGTGGATCTTGAAAGAATTATTTCAGAAAGTAATTAGTATTTGGCGAACCTGACACTATCATTAATCTCCATCGTCAAGTGTATACATTTATGGTCTCTGTGTTTTTGTACTTATTTCTGTTCACTAGCTTTTTCTCGTATTCACATCACGTATTTCTACTACATTTACTAATTTAGATCTGAAACCATCTCACTAAGATGTTTCTTTAATGGGAAATTCTGGAACCTGTTTAAACGATTGCCCCGGCGTCTATGCTCCTGAG AAGTTCT                                                        ]
[+] EMBL CD116853             [                                                                TCGTAGAGATGAATGCAGAAACCTCTCAACCAGTTGTCGAAATCAAAAGCCTAATAACTGGTCTTTGTGTTCTATGAACAACAAACCAAATCCCGTTCTACTCTGCTGGCCGACTGATGTTCAAATACACCCTTATCACATAAGAATATGTCTGGACACTCATATTGCTGTTTTTGTTTACAAAGTACCTAGCAGTATCATTCTTTATCAGGCAAGAAAGATAATTTATTCAAGCAACATATGCATCCCGTATTTTTGAAAGCTAAGCTTTACATTCAAGCGTTTACTTCAAAGTCTAATTAGTGGATCTTGAAAGAATTATTTCAGAAAGTAATTAGTATTTGGCGAACCTGACACTATCATTAATCTCCATCGTCAAGTGTATACATTTATGGTCTCTGTGTTTTTGTACTTATTTCTGTTCACTAGCTTTTTCTCGTATTCACATCACGTATTTCTACTACATTTACTAATTTAGATCTGAAACCATCTCACTAAGATGTTTCTTTAATG                                                                                                                   ]
[+] EMBL CD117516             [                                                                TCGTAGAGATGAATGCACAAACCTCTCAACCAGTTGTCGAAATCAAAAGCCTAATAACTGGTCTTTGTGTTCTATGAACAACAAACCAAATCCCGTTCTACTCTGCTGGCCGACTGATGTTCAAATACACCCTTATCACATAAGAATATGTCTGGACACTCATATTGCTGTTTTTGTTTACAAAGTACCTAGCAGTATCATTCTTTATCAGGCAAGAAAGATAATTTATTCAAGCAACATATGCATCCCGTATTTTTGAAAGCTAAGCTTTACATTCAAGCGTTTACTTCAAAGTCTAATTAGTGGATCTTGAAAGAATTATTTCAGAAAGTAATTAGTATTTGGCGAACCTGACACTATCATTAATCTCCATCGTCAAGTGTATACATTTATGGCCTCTGTGTTTTTGTACTTATTTCTGTTCACTAGCTTTTTCTCGTATTCACATCACGTATTTCTAC                                                                                                                                                                       ]
[+] EMBL CD181696             [                                                                                                                                                                                                                                                                                                                                                                                                                                           TAATCTCCATCGTCAAGTGTATACATTTATGGTCTCTGTGTTTTTGTACTTATTTCTGTTCACTAGCTTTTTCTCGCATTCACATCACGTATTTCTACTACATTTACTAATTTAGATCTGAAACCATCTCACTAAGATGTTTCTTTAATGGGAAATTCTGGAACCTGTTTAAACGATTGCCTCGACGTCTATGCTCCTGAGAAAGTTCTTTTTGCCATAAGCTTTTGTACTGTACTTTTGGGTTTCGTTCTTATTATTTCAGGNG]




>consensus_9663#1
CGAGGCCACGAATTCGGCACGAGGTTTTTCATTCATGGCCTTCTCGTTCCTCGTTTAGCT
TCAATCGTAGAGATGAATGCAGAAACCTCTCAACCAGTTGTCGAAATCAAAAGCCTAATA
ACTGGTCTTTGTGTTCTATGAACAACAAACCAAATCCCGTTCTACTCTGCTGGCCGACTG
ATGTTCAAATACACCCTTATCACATAAGAATATGTCTGGACACTCATATTGCTGTTTTTG
TTTACAAAGTACCTAGCAGTATCATTCTTTATCAGGCAAGAAAGATAATTTATTCAAGCA
ACATATGCATCCCGTATTTTTGAAAGCTAAGCTTTACATTCAAGCGTTTACTTCAAAGTC
TAATTAGTGGATCTTGAAAGAATTATTTCAGAAAGTAATTAGTATTTGGCGAACCTGACA
CTATCATTAATCTCCATCGTCAAGTGTATACATTTATGGTCTCTGTGTTTTTGTACTTAT
TTCTGTTCACTAGCTTTTTCTCGTATTCACATCACGTATTTCTACTACATTTACTAATTT
AGATCTGAAACCATCTCACTAAGATGTTTCTTTAATGGGAAATTCTGGAACCTGTTTAAA
CGATTGCCCCGGCGTCTATGCTCCTGAGAAGTTCTTTTTGCCATAAGCTTTTGTACTGTA
CTTTTGGGTTTCGTTCTTATTATTTCAGGNG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9663#0      CTCCGAGCCAANAATTCGGCACGAGGACAGATCTGAAACCATCTCACTAAGATGTTTCTT 60
consensus_9663#1      --CGAGGCCACGAATTCGGCACGAGGTT-------------TTTCATTCATGGCCTTCTC 45
                        *   ****  **************               * *** * *     **** 

consensus_9663#0      TAATGGGAAATTCTGGAACCTGTTTAAACGATTGCCTCGACGTCTATGCTCCTGAGAAAG 120
consensus_9663#1      --------GTTCCTCGTTTAGCTTCAATCGTAGAGATGAATGCAGAAACCTCTCAACCAG 97
                                * ** *      ** ** **      *  * *   *  *  ** *   **

consensus_9663#0      TTCTTTTTGCCATAAGCTTTTGTACTGTACTTTTGGGTTTCGTTCTTATTATTTCAGGGG 180
consensus_9663#1      TTGTCGAAATCAAAAGCCTAATAACTG-GTCTTTGTGTTCTATGAACAACAAACCAAAT- 155
                      ** *      ** **** *    ****    **** ***   *    *  *   **    

consensus_9663#0      TTTGTATTGCTCAGCTTAGTGAGGGACTGCATGCTCATTTGTCCATATCATATGCAGCTG 240
consensus_9663#1      CCCGTTCTACTCTGCTGGCCGACTGAT---GTTCAAATACACCCTTATCACATAAGAATA 212
                         **  * *** ***    **  **     * *  **    ** ***** **     * 

consensus_9663#0      TACCTATTGCGTTTGCTGGCTGTGTTACACTACTAATAGCCATTTTTAGGATTGTTTCTA 300
consensus_9663#1      TGTCTGG-------------------ACACT-CATATTGCTGTTTTTG--------TTTA 244
                      *  **                     ***** *  ** **  *****         * **

consensus_9663#0      CAAGTAGACGTTTAAGGGAAATGAATTTAACCCTTTGTGAGTTTGAAAAACAATGGAATC 360
consensus_9663#1      CA---AAGTACCTAGCAGTA------TCATTCTTTATCAGGCAAGAAAGATAATTTATTC 295
                      **   *      **   * *      * *  * **     *   **** * ***  * **

consensus_9663#0      AAGAAGAGTCTCTGTCCTACAATCTTCAAGGAAACGCATATAATGCATTTTCTTTTGTTA 420
consensus_9663#1      AAGCAACATATGCATCCCGTATTTTTGAAAGCTAAGCTTTACATTCAAGCGTTTACTTCA 355
                      *** *   * *   ***   * * ** ** *  * ** *   ** **     **   * *

consensus_9663#0      ATAAATCCCCTGACAATTTTAGCCCTAACTCACTTTCGGATAAGAAAGTTGATCATCTAC 480
consensus_9663#1      AAGTCTAATTAGTGGATCTTGAAA--GAATTATTTCAGAAAGTAATTAGTATTTGGCGAA 413
                      *    *     *   ** **       * * * **  * *    *    *  *   * * 

consensus_9663#0      CCATAC-CTGTAACAAACTATCATCAAAGATTGCCAATGCCTCCAAGACGAGCTGTTTTG 539
consensus_9663#1      CCTGACACTATCATTAATCTCCATCGTCAAGTGTATACATTTATGGTCTCTGTGTTTTTG 473
                      **  ** ** * *  **    ****    * **   *    *         *   *****

consensus_9663#0      TATTAAGCCAACTCAACT--TTTAATGTAACACTGATTTAAGAGTTCTCTG-TATGTTAA 596
consensus_9663#1      TACTTATTTCTGTTCACTAGCTTTTTCTCGTATTCACATCACGTATTTCTACTACATTTA 533
                      ** * *      *  ***   **  * *   * * *  * *    * ***  **  ** *

consensus_9663#0      ACAACTTTTATTTCAAGTTTCATTATTTC--TATTGCCATAATCCG---TTTTAGAAT-- 649
consensus_9663#1      CTAATTTAGATCTGAAACCATCTCACTAAGATGTTTCTTTAATGGGAAATTCTGGAACCT 593
                        ** **  ** * **      * * *    * ** *  ****  *   ** * ***   

consensus_9663#0      -TTTATGTGGTGGCACTGAGACATTATTGTGCATGCACTGTTCCCCAACTCCCAAATTTG 708
consensus_9663#1      GTTTAAACGATTGCCCCGG--CGTCTATGCTCCTGAGAAGTTCTTTTTGCCATAAGCTTT 651
                       ****   * * ** * *   * *   **  * **    ****       *  **  ** 

consensus_9663#0      TGTTATATTAACCCACCAGTGATAATTTGGTTGAATAAAGTAAA 752
consensus_9663#1      TGTACTGT--ACTTTTGGGTTTCGTTCTTATTATTTCAGGNG-- 691
                      ***  * *  **      **     * *  **   * * *