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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9665#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 975 fasta sequence
[CCCTCCGAGCCAANAATTCGGCACGAGGCAGAAACAGGACTCAACATCTTGCATACAAT-GCTTGTAAATATGTCTAGTGCGAACTCCGAGAAACGTCAGGTATTCTTTAAAACATTCTTTATGGATATTCTTCAACACATGTTTGCTGTCATTACTGACCGCTCCCAAACAGGAAATTTAACTCTTCAGTCATCGCTGCTGGCTTATATGTTCAAAATAGTGGAGAATGACATAATTACAGTCCCTCTTAGCGATGCTCCTGAGTCAACAACCATACAAGGTTCAAAAGCAAATGTACAATATGTACACCAAAGCTTGAGTCAGTTACTAAAGCAAGTATTTCCTCACCTTCAAGAAACGCAGATTCGTGTTTTTATTGATGGACTATTTTCATTTGATCAAGACGTAGCCGCATTTCGTGAACACGTGCGCGACTTCCTTGTTCAGATACGCGAGG-TCGCCGGAGAAGATTTATCTGATTTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGTCATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGACTAGTTGAAAGAATATTCGACCAATTTTTAGTGCATTTGAATCTTCATATTAAAACTAACATTCCCTGAAATCATACACATATGTGACAACATATATGTCATTTCGATGATAACCAGTAATTTTTCCCCTATATACTGTTGCATTAGAACCACTGGAATCA-TTATTGTCAACATAACTTTTCCAGAATACAGCATTCGAACATGGCAGCGTTCCACTTGTAATGCAATACTTACATT-AAT-TCTGCG-AGCT-TAC-CAG-TA-CCTAAAATAACTTCTTATTTCAATTGCTAGNTACTTTNTATTANACTGAGTTCATTTCGATGAANAAAAAAACAATATGGAGCCATGTATATCATTATTAANGATATATTTGTTAATATACGGNAGT]
[+] EMBL CD079733 [CCCTCCGAGCCAANAATTCGGCACGAGGCAGAAACAGGACTCAACATCTTGCATACAAT GCTTGTAAATATGTCTAGTGCGAACTCCGAGAAACGTCAGGTATTCTTTAAAACATTCTTTATGGATATTCTTCAACACATGTTTGCTGTCATTACTGACCGCTCCCAAACAGGAAATTTAACTCTTCAGTCATCGCTGCTGGCTTATATGTTCAAAATAGTGGAGAATGACATAATTACAGTCCCTCTTAGCGATGCTCCTGAGTCAACAACCATACAAGGTTCAAAAGCAAATGTACAATATGTACACCAAAGCTTGAGTCAGTTACTAAAGCAAGTATTTCCTCACCTTCAAGAAACGCAGATTCGTGTTTTTATTGATGGACTATTTTCATTTGATCAAGACGTAGCCGCATTTCGTGAACACGTGCGCGATTTCCTTGTTCAGATACGCGAGG TCGCCGGAGAAGATTTATCTGATTTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGTCATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGACTAGTTGAAAGAATATTCGACCAATTTTTAGTGCATTTGAATCTTCATATTAAAACTAACATTCCCTGAAATCATACACATATGTGACAACATATATGTCATTTCGATGATAACCAGTAATTNTTCCCCTATATACTGTTGCATTAGAACCACTGGAATCA TTATTGTCAACATAACTTTTCCAG ATACAGCATTCG ACATGGCAGCG TCCACTTGT ATGC ATAC TACATT AAT TCTGCG AGCT TAC CAG TA CCTAAAn ]
[+] EMBL CD081942 [ TGCATACAATGGCTTGTAAATATGTCTAGTGCGAACTCCGAGAAACGTCAGGTATTCTTTAAAACATTCTTTATGGATATTCTTCAACACATGTTTGCTGTCATTACTGACCGCTCCCAAACAGGAAATTTAACTCTTCAGTCATCGCTGCTGGCTTATATGTTCAAAATAGTGGAGAATGACATAATTACAGTCCCTCTTAGCGATGCTCCTGAGTCAACAACCATACAAGGTTCAAAAGCAAATGTACAATATGTACACCAAAGCTTGAGTCAGTTACTAAAGCAAGTATTTCCTCACCTTCAAGAAACGCAGATTCGTGTTTTTATTGATGGACTATTTTCATTTGATCAAGACGTAGCCGCATTTCGTGAACACGTGCGCGACTTCCTTGTTCAGATACGCGAGG TCGCCGGAGAAGATTTATCTGATTTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGTCATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGACTAGTTGAAAGAATATTCGACCAATTTTTAGTGCATTTGAATCTTCATATTAAAACTAACATTCCCTGAAATCATACACATATGTGACAACATATATGTCATTTCGATGATAACCAGTAATTNTTCCCCTATATACTGTTGCATTAGAA CACTGGAATCANNTA TGTC ACATAAC TTTCCAG ATACAGCATTCG ACATGGCAGCG TCCACTTGT ATGC ATAC TACATT AAT CTTGCG AGCT TAC CAG TA CCTNAAATAtc ]
[-] EMBL CD073990 [ AAAATAGTGGAGAATGACATAATTACAGTCCCTCTTAGCGATGCTCCTGAGTCAACAACCATACAAGGTTCAAAAGCAAATGTACAATATGTACACCAAAGCTTGAGTCAGTTACTAAAGCAAGTATTTCCTCACCTTCAAGAAACGCAGATTCGTGTTTTTATTGATGGACTATTTTCATTTGATCAAGACGTAGCCGCATTTCGTGAACACGTGCGCGATTTCCTTGTTCAGATACGCGAGG TCGCCGGAGAAGATTTATCTGATTTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGTCATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGACTAGTTGAAAGAATATTCGACCAATTTTTAGTGCATTTGAATCTTCATATTAAAACTAACATTCCCTGAAATCATACACATATGTGACAACATATATGTCATTTCGATGATAACCAGTAATTTTTCCCCTATATACTGTTGCATTAGAACCACTGGAATCA TTATTGTCAACATAACTTTTCCAGAATACAGCATTCGAACATGGCAGCGTTCCACTTGTAATGCAATACTTACATTAAATCTCTGCGAAGCTATACACAGTTACCCTAAAATAAt ]
[+] EMBL CD079239 [ ACAATATGTACACCAAAGCTTGAGTCAGTTACTAAAGCAAGTATTTCCTCACCTTCAAGAAACGCAGATTCGTGTTTTTATTGATGGACTATTTTCATTTGATCAAGACGTAGCCGCATTTCGTGAACACGTGCGCGACTTCCTTGTTCAGATACGCGAGG TCGCCGGAGAAGATTTATCTGATTTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGTCATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGACTAGTTGAAAGAATATTCGACCAATTTTTAGTTCATTTGAATCTTCATATTAAAACTAACATTCCCTGAAATCATACACATATGTGACAACATATATGTCATTTCGATGATAACCAGTAATTTTTCCCCTATATACTGTTGCATTAGAACCACTGGAATCA TTATTGTCAACATAACTTTTCCAGAATACAGCATTCGAACATGGCAGCGTTCCACTTGTAATGCAATACTTACATTAAATCTCTGCGAAGCTATACACAGTTACCCTANAATAA TTCTTATTTCAATTGCTAGNTACTTTNTATTANACTGAGTTCATTTCGATGAANAAAAAAACAATATGGAGCCATGTATATCATTATTAANGATATATTTGTTAATATACGGNAGT]
[-] EMBL CD186640 [ TCCTCACCTTCAAGAAACGCAGATTCGTGTTTTTATTGATGGACTATTTTCATTTGATCAAGACGTAGCCGCATTTCGTGAACACGTGCGCGACTTCCTTGTTCAGATACGCGAGG TCGCCGGAGAAGATTTATCTGATTTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGTCATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGACTAGTTGAAAGAATATTCGACCAATTTTTAGTGCATTTGAATCTTCATATTAAAACTAACATTGCCTGAAATCATACACATATGTGACAACATATATGTCATTTCGATGATAACCAGTAATCTTTCCCCTATATACTGTTGCATTAGAACCACTGGAATCA TTATTGTCAACA ]
[-] EMBL BG930919 [ atgGAGGATCGCCGGAGAAGATTTATCTGATTTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGTCATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGACTAGTTGAAAGAATATTCGACCAATTTTTAGTGCATTTGAATCTTCATATTAAAACTAACATTCCCTGAAATCATACACATATGTGACAACATATATGTCGTTTCGATGATAACCAGTAATTTTTCCCCTATATACTGTTGCATTAGAc ]
[-] EMBL CD062520 [ TCGCCGGAGAAGATTTATCTGATTTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGTCATGCGTGTG TCCTGG ATTTTAG ]
[-] EMBL CD149496 [ GCTCAGGCACAAGCAGCAAAACTAAGACGTCATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGACTAGTTGAAAGAATATTCGACCAATTTTTAGTGCATTTGAATCTTCATATTAAAACTAACATTCCCTGAAATCATACACATATGTGACAACATATATGTCATTTCGATGATAACCAGTAATTTTTCCCCTATATACTGTTGCATTAGAACCACTGGAATCA TTATTGTCAACATAACTTTTCCAGAATACAGCATTCGAACATGGCAGCGTTCCACTTGTAATGCAATACTTACATT A ]
consensusID : consensus_9665#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 500 fasta sequence
[GCTGACGACTACCAAAAAAATCTTCCTGCTGCTCGGGAGGCCGAAGTTTTGAGTTTAATGGCTACCCTTGTTAATCGTCTTGAAGACCATATTCTTCCAGCTCTGCCTCGCGTTTTAGATGCAGTCTTTCAGTCTACTCTAGAGATGATCGATAAAGACTTGGAGGAATTTCCTGAACATCGAACTAATTTTTTCACTCTTCTACAGGCTGTAAATGCTCATTGTTTCTCTGCTTTGTTAAGCTTAACATCTGATAAGTTCAAACTGATTTTAGATAGTGTTATTTGGGCAATCAAACATACTATGCGTCAAGTCTCAGAAACAGGACTCAACATCTTGCATACAATGCTTGTAAATATGTCTAGTGCGAACTCCGAGAAACGTCAGGTATTCTTTAAAACATTCTTTATGGATATTCTTCAACACATGTTTGCTGTCATTACTGACCGCTCCCAAACAGGAAATTTAACTCTTCAGTCATCGCTGCTGGCTTATATGTT]
[+] EMBL CD153414 [GCTGACGACTACCAAAAAAATCTTCCTGCTGCTCGGGAGGCCGAAGTTTTGAGTTTAATGGCTACCCTTGTTAATCGTCTTGAAGACCATATTCTTCCAGCTCTGCCTCGCGTTTTAGATGCAGTCTTTCAGTCTACTCTAGAGATGATCGATAAAGACTTGGAGGAATTTCCTGAACATCGAACTAATTTTTTCACTCTTCTACAGGCTGTAAATGCTCATTGTTTCTCTGCTTTGTTAAGCTTAACATCTGATAAGTTCAAACTGATTTTAGATAGTGTTATTTGGGCAATCAAACATACTATGCGTCAAGTCTCAGAAACAGGACTCAACATCTTGCATACAATGCTTGTAAATATGTCTAGTGCGAACTCCGAGAAACGTCAGGTATTCTTTAAAACATTCTTTAT ]
[+] EMBL CD092991 [ AATGGCTACCCTTGTTAATCGTCTTGAAGACCATATTCTTCCAGCTCTGCCTCGCGTTTTAGATGCAGTCTTTCAGTCTACTCTAGAGATGATCGATAAAGACTTGGAGGAATTTCCTGAACATCGAACTAATTTTTTCACTCTTCTACAGGCTGTAAATGCTCATTGTTTCTCTGCTTTGTTAAGCTTAACATCTGATAAGTTCAAACTGATTTTAGATAGTGTTATTTGGGCAATCAAACATACTATGCGTCAAGTCTCAGAAACAGGACTCAACATCTTGCATACAATGCTTGTAAATATGTCTAGTGCGAACTCCGAGAAACGTCAGGTATTCTTTAAAACATTCTTTATGGATATTCTTCAACACATGTTTGCTGTCATTACTGACCGCTCCCAAACAGGAAATTTAACTCTTCAGTCATCGCTGCTGGCTTATATGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9665#0 CCCTCCGAGCCAANAATTCGGCACGAGGCAGAAACAGGACTCAACATCTTGCATACAATG 60
consensus_9665#1 ------------------------------------------------------------
consensus_9665#0 CTTGTAAATATGTCTAGTGCGAACTCCGAGAAACGTCAGGTATTCTTTAAAACATTCTTT 120
consensus_9665#1 ------------------------------------------------------------
consensus_9665#0 ATGGATATTCTTCAACACATGTTTGCTGTCATTACTGACCGCTCCCAAACAGGAAATTTA 180
consensus_9665#1 ------------------------------------------------------------
consensus_9665#0 ACTCTTCAGTCATCGCTGCTGGCTTATATGTTCAAAATAGTGGAGAATGACATAATTACA 240
consensus_9665#1 ------------------------------------------------------------
consensus_9665#0 GTCCCTCTTAGCGATGCTCCTGAGTCAACAACCATACAAGGTTCAAAAGCAAATGTACAA 300
consensus_9665#1 ------------------------------------------------------------
consensus_9665#0 TATGTACACCAAAGCTTGAGTCAGTTACTAAAGCAAGTATTTCCTCACCTTCAAGAAACG 360
consensus_9665#1 ------------------------------------------------------------
consensus_9665#0 CAGATTCGTGTTTTTATTGATGGACTATTTTCATTTGATCAAGACGTAGCCGCATTTCGT 420
consensus_9665#1 ------------------------------------------------------------
consensus_9665#0 GAACACGTGCGCGACTTCCTTGTTCAGATACGCGAGGTCGCCGGAGAAGATTTATCTGAT 480
consensus_9665#1 ------------------------------GCTGACGACTACCAAAAAAATCTTCCTGC- 29
** * * * * ** ** * ***
consensus_9665#0 TTATATTTGGAAGAAAGAGAAGCTGAGATTGCTCAGGCACAAGCAGCAAAACTAAGACGT 540
consensus_9665#1 ---TGCTCGGGAGGCCGAAGTTTTGAGTTTAAT--GGCTACCCTTGTTAATC---GTCTT 81
* * ** ** ** **** ** * *** * ** * * * *
consensus_9665#0 CATGCTTGTGTTCCTGGAATTTTAGGTCCCCATGAAGTTGATATGTGTGA--CTAGTTGA 598
consensus_9665#1 GAAGACCATATTCTTCCAGCTCTGCCTCGCGTTTTAGATGCAGTCTTTCAGTCTACTCTA 141
* * * *** * * * * ** * * ** ** * * * * *** * *
consensus_9665#0 AAGAATATTCGACCAATTTTTAGTGCATTTGAATCTTCATATTAAAACTAACATTCCCTG 658
consensus_9665#1 GAGA-TGATCGATAAAGACTTGGAGGAATT---TCCTGAACATCGAACTAATTTTTTC-- 195
*** * **** ** ** * * * ** ** * * * ****** ** *
consensus_9665#0 AAATCATACACATATGTGACAACATATATGTCATTTCGATGATAACCAGTAATTTTTCCC 718
consensus_9665#1 -ACTCTTCTACAG--GCTGTAA-ATGCTCATTGTTTCTCTGCT--TTGTTAAGCTTAACA 249
* ** * *** * ** ** * **** ** * *** ** *
consensus_9665#0 CTATATACTGTTGCATTAGAACCAC-TGGAATCATTATTGTCAACATAACTTTTCCAGAA 777
consensus_9665#1 TCTGATAAGTTCAAACTGATTTTAGATAGTGTTATT-TGGGCAATCAAACATACTATGCG 308
*** * * * * * * * *** * * *** *** * *
consensus_9665#0 TACAGCATTCGAACATGG---CAGCGTTCCACTTGTAATGCAATACTTACATTAATTCTG 834
consensus_9665#1 TCAAGTCTCAGAAACAGGACTCAACATCTTGCATACAATGCT-TGTAAATATGTCTAGTG 367
* ** * *** ** ** * * * * ***** * * ** * **
consensus_9665#0 CGAGCTTACCAGTACCTAAAATAACTTCTTATTTCAATTGCTAGNTACTTTNTATTANAC 894
consensus_9665#1 CGAACTCCGAGAAACGTCAGGTA-TTCTTTAAAACATTCTTTATGGATATTCTTCAACAC 426
*** ** ** * * ** * *** ** * ** * ** * * **
consensus_9665#0 TGAGTTCATTTCGATGAANAAAAAAACAATATGGAGCCATGTATATCATTATTAANGATA 954
consensus_9665#1 -ATGTTTGCTGTCATTACTGACCGCTCCCAAACAGGAAATTTAACTCTTCAGTCATCGC- 484
*** * ** * * * * * ** ** ** * * * *
consensus_9665#0 TATTTGTTAATATACGGNAGT 975
consensus_9665#1 TGCTGGCTTATATGTT----- 500
* * * * ****
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||