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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9672#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 999 fasta sequence
[GCTTAAATAACTGAGCTAATGGGTGGCTCCTTACACGTATTTTGACCTGGTAAATTAGACAGTAGTAAAATAATTTGTAATGCTTGTTTTTCTTATTTGTTTTTCAAACAATCTTTTGTTTTATTAATTTTCATGTGAATGCTCGTAATATTTGCTTGTTTAATCCTTATAAGAATATGGTTCATATGAAAAATTATTTGCTTATAATGATAACAATGATAATATAGCTTGTGAAGTTCATTTTTATTAATGTTCTTAGAACATTGATAAGTCCTAGTACTTTTTTTCTTACTGAAGTCAGATGAACTAAATACAAATACAGTACAGTTGGAGACCCTGAGTGACATGGCTCAGAGTCGATCACAATGGCGCAAATGTATACACTCTTTGTCTTCCCTTGAACCTTGATATTAAAATTGTTTTATACCTTTCTACGAACTAATTCTTTCTCCCGGTATCATATCCTTATAATATTCAATCTTTTTTTATATTTTACTACTGTTGAAGTAACTGTTTTTGTGAGTTTGGTGCTCGTCTTGTTGTGGCAACTTAGAACAGTGCATATATGTGCCTAGTCCTACGTTNTAGACGATTGACTGACTGACAGATACAGTAACAATATGGCTGAAGGCATAGTGGTTTTAATTTCTTGTGTGTATTTATGTGATAAGTAAACTTGCTTATCTTCCTCTTATTTTAAGTGAATAAGTATAGCAGTCACCCGCATATAAAAATCCAATTATGTACTAAACTGATGAATCATTAATGTATGTTTTTGAGTGAATTATTGTTAATAAGCAAACACTTTTTATTCTGATTATATTTTATTTTGTTTTAGTGCATCAATCCTTCTAATGAAGAATAAGAATTGAAGTTTTGGATGTATCCATATCTACCTGTTGCAATATCATCATTTCATCAGTGGTTTAAATGAAATAAAACATTATTTTTTTAAAACTGTATATGCATTTAATTGGAATTTATAACTGTATATACAAT]
[+] EMBL CD082415 [GCTTAAATAACTGAGCTAATGGGTGGCTCCTTACACGTATTTTGACCTGGTAAATTAGACAGTAGTAAAATAATTTGTAATGCTTGTTTTTCTTATTTGTTTTTCAAACAATCTTTTGTTTTATTAATTTTCATGTGAATGCTCGTAATATTTGCTTGTTTAATCCTTATAAGAATATGGTTCATATGAAAAATTATTTGCTTATAATGATAACAATGATAATATAGCTTGTGAAGTTCATTTTTATTAATGTTCTTAGAACATTGATAAGTCCTAGTACTTTTTTTCTTACTGAAGTCAGATGAACTAAATACAAATACAGTACAGTTGGAGACCCTGAGTGACATGGCTCAGAGTCGATCACAATGGCGCAAATGTATACACTCTTTGTCTTCCCTTGAACCTTGATATTAAAATTGTTTTATACCTTTCTACGAACTAATTCTTTCTCCCGGTATCATATCCTTATAATATTCAATCTTTTTTTATATTTTACTACTGTTGAAGTAACTGTTTTTGTGAGTTTGGTGCTCGTCTTGTTGTGGCAACTTAGAACAGTGCATATATGTGCCTAGTCCTACGTTNTAGACGATTGACTGACT ]
[-] EMBL CD076013 [ TACC TTCTACGAACTAA TCTTTCTCCCGGTATCATATCCTTATAATATTCAATCTTTTTTTATATTTTACTACTGTTGAAGTAACTGTTTTTGTGAGTTTGGTGCTCGTCTTGTTGTGGCAACTTAGAACAGTGCATATATGTGCCTAGTCCTACGTTTTAGACGATTGACTGACTGACAGATACAGTAACAATATGGCTGAAGGCATAGTGGTTTTAATTTCTTGTGTGTATTTATGTGATAAGTAAACTTGCTTATCTTCCTCTTATTTTAAGTGAATAAGTATAGCAGTCACCCGCATATAAAAATCCAATTATGTACTAAACTGATGAATCATTAATGTATGTTTTTGAGTGAATTATTGTTAATAAGCAAACACTTTTTATTCTGATTATATTTTATTTTGTTTTAGTGCATCAATCCTTCTAATGAAGAATAAGAATTGAAGTTTTGGATGTATCCATATCTACCTGTTGCAATATCATCATTTCATCAGTGGTTTAAATGAAATAAAACATTATTTTTTTAAAACTGTATATGCATTTAATTGGAATTTATAACTGTATATACAAT]
consensusID : consensus_9672#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 677 fasta sequence
[ATTTCAGGAGTACATGAGAGCTTTTAGGAAAAAGTGTTCATTCCAGTGTAGAAGCACGACTTACGAAGGGCAAGTTTCCTTCTAATCTACCTGAAAATGTTTCCAAATATTGTGAAAGTCTAAAATATATCTTGAATGATTTAAAGTATTCTGCAGTGGAAACTAACTGCTTTCATCCTCAGCTTTTGTATCGCGGGAGGTTTGATAGTATAGTGTTTTTAAAAGATATAAATGAACCTATTTTGACTGAATGGAAAACAGTACACGAATCCAAAAGAATATTGACTATTGA-ACAGGCTTATGATAGTCCATTACAAGTGGCCGCGTATATTGGAGCTTATAATTTTACTCGTTATCCTGAATCTTTGCCTGTGACAATGTATTTTGAATCTAACTTAGGTCAAAAAAGGAATGCTGGTGTATTCTTATGGTGATGGTTATCCAGCTGCTCGGTTTGTTTTGAACGAAACTAACTTGTTACATTACTGGGAGTTGTGGTGTGAACGTGTTAAAACTTATTATGATCAGTGCATCAATCCTTCTAATGAAGAATAANGAANNTG-AGNTNTGGATGTATCCATATCTACCTGTTGCNATATCATCATTTCATCAGTGGTTAANATGAAAT-AAACATTATTTTTTT-AAACTGTTATGCATTTAATGGNANTTATACTGAT]
[+] EMBL CD079255 [ATTTCAGGAGTACATGAGAGCTTTTAGGAAAAAGTGTTCATTCCAGTGTAGAAGCACGACTTACGAAGGGCAAGTTTCCTTCTAATCTACCTGAAAATGTTTCCAAATATTGTGAAAGTCTAAAATATATCTTGAATGATTTAAAGTATTCTGCAGTGGAAACTAACTGCTTTCATCCTCAGCTTTTGTATCGCGGGAGGTTTGATAGTATAGTGTTTTTAAAAGATATAAATGAACCTATTTTGACTGAATGGAAAACAGTACACGAATCCAAAAGAATATTGACTATTGA ACAGGCTTATGATAGTCCATTACAAGTGGCCGCGTATATTGGAGCTTATAATTTTACTCGTTATCCTGAATCTTTGCCTGTGACAATGTATTTTGAATCTAACTTAGGTCAAAAAAGGAATGCTGGTGTATTCTTATGGTGATGGTTATCCAGCTGCTCGGTTTGTTTTGAACGAAACTAACTTGTTACATTACTGGGAGTTGTGGTGTGAACGTGTTAAAACTTATTATGATCAGTGCATCAATCCTTCTAATGAAGAATAANGAANNTG AGNTNTGGATGTATCCATATCTACCTGTTGCNATATCATCATTTCATCAGTGGTTAANATGAAAT AAACATTATTTTTTT AAACTGTTATGCATTTAATGGNANTTATACTGAT]
[+] EMBL CD081958 [ATTTCAGGAGTACATGAGAGCTTTTAGGAAAAAGTGTTCATTCCAGTGTAGAAGCACGACTTACGAAGGGCAAGTTTCCTTCTAATCTACCTGAAAATGTTTCCAAATATTGTGAAAGTCTAAAATATATCTTGAATGATTTAAAGTATTCTGCAGTGGAAACTAACTGCTTTCATCCTCAGCTTTTGTATCGCGGGAGGTTTGATAGTATAGTGTTTTTAAAAGATATAAATGAACCTATTTTGACTGAATGGAAAACAGTACACGAATCCAAAAGAATATTGACTATTGA ACAGGCTTATGATAGTCCATTACAAGTGGCCGCGTATATTGGAGCTTATAATTNTACTCGTTATCCTGAATCTT ]
[+] EMBL CD139557 [ AAGTCTAAAATATATCTTGAATGATTTAAAGTATTCTGCAGTGGAAACTAACTGCTTTCATCCTCAGCTTTTGTATCGCGGGAGGTTTGATAGTATAGTGTTTTTAAAAGATATAAATGAACCTATTTTGACTGAATGGAAAACAGTACACGAATCCAAAAGGATATTGACTATTGA ACAGGCTTATGATAGTCCATTACAAGTGGCCGCGTATATTGGAGCTTATAATTTTACTCGTCATCCTGAATCTTTGCCTGTGACAATGTATTTTGAATCTAACTTAGGTCAAAAAAGG ATGCTGGTGTATTCTTA ]
[+] EMBL CD139774 [ AAGTCTAAAATATATCTTGAATGATTTAAAGTATTCTGCAGGGGAAACTAACTGCTTTCATCCTCAGCTTTTGTATCGCGGGAGGTTTGATAGTATAGTGTTTTTAAAAGATATAAATGAACCTATTTTGACTGAATGGAAAACAGTACACGAATCCAAAA ]
[-] EMBL CD139640 [ TGACTA TGACAGGGGCTTATGATAGTCCATTACAAGTGGCCGCGTATATTGGAGCTTATAATTTTACTCGTTATCCTGAATCTTTGCCTGTGACAATGTATTTTGAATCTAACTTAGGTCAAAAAAGGAATGCTGGTGTATTCTTATGGTGATGGTTATCCAGCTGCTCGGTTTGTTTTGAACGAAACTAACTTGTTACATTACTGGGAGTTGTGGTGTGAACGTGTTAAAACTTATTATGATCAGTGCATCAATCCTTCTAATGAAGAATAA GAA TTGAAGTTTTGGATGTATCCATATCTACCTGTTGCAATATCATCATTTCATCAGTGGTTTAAATGAAATAAAACATTATTTTTTTAAAACTGTata ]
consensusID : consensus_9672#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence
[ACTACCACCTCACTTTGATTTACAGCTTACATGATATTTACAAACAACTCTTAAAAAATAATTAAATCAATCAAGTTATGAAAACGACGGAACTTCCCATATACTTAAGATTATTTTATTGGCTTTATGCGAATCTGGAAAGCCCATCCACCATACATTTATCTAAAAATGTGTTTATAATTTTTAACCGCGTTTCTTAGTATCTAATTCATTGTTATTTCAAAATAGGTGACAATGTATTTTGAATCTAACTTAGGTCAAAAAAGGAATGCTGGTGTATTCTTATGGTGATGGTTATCCAGCTGCTCGGTTTGTTTTGAACGAAACTAACTTGTTACATTACTGGGAGTTGTGGTGTGAACGTGTTAAAACTTATTATGATCAGGTAAACTGCTTAGCATGTTTGGTTGACTTTTGTTGTGCAGTACTAAATTTTAAAATTTCCTCAGGTTTCTGTT]
[+] EMBL CD131297 [ACTACCACCTCACTTTGATTTACAGCTTACATGATATTTACAAACAACTCTTAAAAAATAATTAAATCAATCAAGTTATGAAAACGACGGAACTTCCCATATACTTAAGATTATTTTATTGGCTTTATGCGAATCTGGAAAGCCCATCCACCATACATTTATCTAAAAATGTGTTTATAATTTTTAACCGCGTTTCTTAGTATCTAATTCATTGTTATTTCAAAATAGGTGACAATGTATTTTGAATCTAACTTAGGTCAAAAAAGGAATGCTGGTGTATTCTTATGGTGATGGTTATCCAGCTGCTCGGTTTGTTTTGAACGAAACTAACTTGTTACATTACTGGGAGTTGTGGTGTGAACGTGTTAAAACTTATTATGATCAGGTAAACTGCTTAGCATGTTTGGTTGACTTTTGTTGTGCAGTACTAAATTTTAAAATTTCCTCAGGTTTCTGTT]
consensusID : consensus_9672#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 288 fasta sequence
[CCCTTCGCTCCATTACAAGTGGCCGCGTATATTGGAGCTTATAATTTTACTCGTTATCCTGAATCTTTGCCTGTCAAAAAAAGGAATGCTGGCGTATTCTTATGGTGATGGTTATCCAGCTGCTCGGTTTGTTTTGAACGAAACTAACTTGTTACATTACTGGGAGTTGTGGTGTGAACGTGTTAAAACTTATTATGATCAGTGCATCAATCCTTCTAATGAAGAATAAGAATTGAAGTTTTGGATGTATCCATATCTACCTGTTGCAATATCATCATTTCATCAGTG]
[+] EMBL CD149034 [CCCTTCGCTCCATTACAAGTGGCCGCGTATATTGGAGCTTATAATTTTACTCGTTATCCTGAATCTTTGCCTGTCAAAAAAAGGAATGCTGGCGTATTCTTATGGTGATGGTTATCCAGCTGCTC ]
[+] EMBL CD131597 [ atgatagTCCATTACAAGTGGCCGCGTATATTGGAGCTTATAATTTTACTCGTTATCCTGAATCTTTGCCTGTC AAAAAAGGAATGCTGGTGTATTCTTATGGTGATGGTTATCCAGCTGCTCGGTTTGTTTTGAACGAAACTAACTTGTTACATTACTGGGAGTTGTGGTGTGAACGTGTTAAAACTTATTATGATCAGTGCATCAATCCTTCTAATGAAGAATAAGAATTGAAGTTTTGGATGTATCCATATCTACCTGTTGCAATATCATCATTTCATCAGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9672#1 ------------------------------------------------------------
consensus_9672#3 ------------------------------------------------------------
consensus_9672#2 ------------------------------------------------------------
consensus_9672#0 GCTTAAATAACTGAGCTAATGGGTGGCTCCTTACACGTATTTTGACCTGGTAAATTAGAC 60
consensus_9672#1 ------------------------------------------------------------
consensus_9672#3 ------------------------------------------------------------
consensus_9672#2 ------------------------------------------------------------
consensus_9672#0 AGTAGTAAAATAATTTGTAATGCTTGTTTTTCTTATTTGTTTTTCAAACAATCTTTTGTT 120
consensus_9672#1 ------------------------------------------------------------
consensus_9672#3 ------------------------------------------------------------
consensus_9672#2 ------------------------------------------------------------
consensus_9672#0 TTATTAATTTTCATGTGAATGCTCGTAATATTTGCTTGTTTAATCCTTATAAGAATATGG 180
consensus_9672#1 ------------------------------------------------------------
consensus_9672#3 ------------------------------------------------------------
consensus_9672#2 ------------------------------------------------------------
consensus_9672#0 TTCATATGAAAAATTATTTGCTTATAATGATAACAATGATAATATAGCTTGTGAAGTTCA 240
consensus_9672#1 ------------------------------------------------------------
consensus_9672#3 ------------------------------------------------------------
consensus_9672#2 ------------------------------------------------------------
consensus_9672#0 TTTTTATTAATGTTCTTAGAACATTGATAAGTCCTAGTACTTTTTTTCTTACTGAAGTCA 300
consensus_9672#1 -ATTTCAGGAGTACATGAGAGCTTTTAGGAAAAAGTGTTCATTCCAGTGTAGAAGCACGA 59
consensus_9672#3 ------------------------------------------------------------
consensus_9672#2 ------------------------------------------------------------
consensus_9672#0 GATGAACTAAATACAAATACAGTACAGTTGGAGACCCTGAGTGACATGGCTCAGAGTCGA 360
consensus_9672#1 CTTACGAAGGGCAAGTTTCCTTCTAATCTACCTGAAAATGTTTCCAAATATTGTGAAAGT 119
consensus_9672#3 ------------------------------------------------------------
consensus_9672#2 -----------------------------------------------------------A 1
consensus_9672#0 TCACAATGGCGCAAATGTATACACTCTTTGTCTTCCCTTGAACCTTGATATTAAAATTGT 420
consensus_9672#1 CTAAAATATATCT-TGAATGATTTAAAGTATTCTGCAGTGGAAACTAACTGCTTTCATCC 178
consensus_9672#3 ------------------------------------------------------------
consensus_9672#2 CTACCACCTCACT-T---TGATTTACAGC-TTACATGATATTTACAAACAACTCTTAAA- 55
consensus_9672#0 TTTATACCTTTCTACGAACTAATTCTTTCTCCCGGTATCATATCCTTATAATATTCAAT- 479
consensus_9672#1 TCAGCTTTTGTATCGCGGGAGGTTTGATAGTATAGTGTTTTTAAAAGATATAAATGAACC 238
consensus_9672#3 ------------------------------------------------------------
consensus_9672#2 -AAATAATTAAATCAATCAAGTTATGAAAACGACGGAACTTCCC---ATATACTTAAGAT 111
consensus_9672#0 -CTTTTTTTATATTTTACTACTGTTGA-AGTAACTGTTTTTGTGAGTTTGGTGCTCGTCT 537
consensus_9672#1 TATTTTGACTGAATGGAAAACAG--TACACGAATCCA---AAAGAATATTGACTATTGAA 293
consensus_9672#3 ------------------------------------------------------------
consensus_9672#2 TATTTTATTGGCTT-----------TATGCGAATCTGG--AAAGCCCATCCACCATACAT 158
consensus_9672#0 TGTTGTGGCAACTTAGAACAGTGCATATATGTGCCTAGTCCTACGTTNTAGACGATTGAC 597
consensus_9672#1 CAGGCTTATGATA-GTCCATTACAAGTGGCCGCGTATATTGGAGCTTATAATTTTACTCG 352
consensus_9672#3 ------CCCTTCG-CTCCATTACAAGTGGCCGCGTATATTGGAGCTTATAATTTTACTCG 53
consensus_9672#2 TTATCTAAAAATGTGTTTATAATTTTTAACCGCGTTTCTT--AGTATCTAATTC--ATTG 214
consensus_9672#0 TGACTGACAGATACAGTAACAATA--TGGCTGAAGGCATAGTGGTTT-TAATTTCTTGTG 654
* * * * * * * * ***** *
consensus_9672#1 TTATCCTGAATCTTTGCCTGTGACAATGTAT-TTTGAATCTAACTTAGGTCAAAAAAGGA 411
consensus_9672#3 TTATCCTGAATCTTTGCCTGTCA----------------------------AAAAAAGGA 85
consensus_9672#2 TTATTTCAAA-----ATAGGTGACAATGTAT-TTTGAATCTAACTTAGGTCAAAAAAGGA 268
consensus_9672#0 TGTATTTATGTG---ATAAGTAAACTTGCTTATCTTCCTCTTATTTTAAGTGAATAAGTA 711
* ** * ** *** *
consensus_9672#1 ATGCTGGTGTATTCTTATGGTGAT--GGTTATCCAGCTGCTCGGTTTGTTTTGAACGAAA 469
consensus_9672#3 ATGCTGGCGTATTCTTATGGTGAT--GGTTATCCAGCTGCTCGGTTTGTTTTGAACGAAA 143
consensus_9672#2 ATGCTGGTGTATTCTTATGGTGAT--GGTTATCCAGCTGCTCGGTTTGTTTTGAACGAAA 326
consensus_9672#0 TAGCAGTCACCCGCATATAAAAATCCAATTATGTACTAAACTGATGAATCATTAATGTAT 771
** * * *** ** **** * * * * * ** * *
consensus_9672#1 CTAACTTGTTACATTACTGGGAGT-------TGTGGTGTGAACGTGTTAAAACTTATTAT 522
consensus_9672#3 CTAACTTGTTACATTACTGGGAGT-------TGTGGTGTGAACGTGTTAAAACTTATTAT 196
consensus_9672#2 CTAACTTGTTACATTACTGGGAGT-------TGTGGTGTGAACGTGTTAAAACTTATTAT 379
consensus_9672#0 GTTTTTGAGTGAATTATTGTTAATAAGCAAACACTTTTTATTCTGATTATATTTTATTTT 831
* * * **** ** * * * * * *** * ***** *
consensus_9672#1 GATC-AGTGCATCAATCCTTCTAATGAAGAATAANGAANNTGAGNTNTGGATGTATCCAT 581
consensus_9672#3 GATC-AGTGCATCAATCCTTCTAATGAAGAATAAG-AATTGAAGTTTTGGATGTATCCAT 254
consensus_9672#2 GATC-AG---GTAAA--CTGCTTAGCATGTTTGGTTGACTTTTGTTGTGCAGTACTAAAT 433
consensus_9672#0 GTTTTAGTGCATCAATCCTTCTAATGAAGAATAAG-AATTGAAGTTTTGGATGTATCCAT 890
* * ** * ** ** ** * * * * * * * ** * * **
consensus_9672#1 ATCTACCTGTTGCNATATCATCATTTCATCAGTGGTTAANATGAAATAAA-CATTATTTT 640
consensus_9672#3 ATCTACCTGTTGCAATATCATCATTTCATCAGTG-------------------------- 288
consensus_9672#2 TTTAAAATTTCCTCAGGTTTCTGTT----------------------------------- 458
consensus_9672#0 ATCTACCTGTTGCAATATCATCATTTCATCAGTGGTTTAAATGAAATAAAACATTATTTT 950
* * * * * * **
consensus_9672#1 TTTAAACTGTTATGCATTTAATGGNANTTATACTGAT------------ 677
consensus_9672#3 -------------------------------------------------
consensus_9672#2 -------------------------------------------------
consensus_9672#0 TTTAAAACTGTATATGCATTTAATTGGAATTTATAACTGTATATACAAT 999
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||