cluster # 9673

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Schistosoma mansoni
cluster # 9673 cluster # 9673 Sequences # 10 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9673#0 length = 1053 sequences # 8

consensus_9673#1 length = 352 sequences # 2

consensusID : consensus_9673#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1053
fasta sequence

                              [AACTGACAGGAGACCGTGTGATTTTCGATCGACGCCTCGGAACAGAACTAGTAAATGCTACGCTCCACCATAATGGAATGATCAAATTAGACACTGGACAGCTCGTAGCTCCCTCCTCTCGGGAAGGCTCTAAATACATGTTGGTCACAGATGAAGACAACCAAACCCTTCTAGTTTACGATCGTTTTACAGGAGAACAGATCAAGGGTGCACAGGTTGATCCCAACGGTTTGATTCTGTTCGAAGATGGACGCATGGCCATTGAGCCATCATCTAAACTAGATAGATATGTTATAATGACGGACCCAAACAACGGTGAAAAACTGGTTTTCGACAGACGAACAGGTAGTCATGTCAAGGATGCTGTGTACAGTGAAGATGGGTTGATCCGCTTTCCAGACGGTAGGCGCGTTGCACCAGGTTCCACTGACAACAGTTCACAGTATCTAATTCACTTCGACTCTGCAACGAAGGAGAACTTGGTTTTTGACAGACATACTGGTGAACAAGTCGAGGGCGCCCCAGTAGATTCACGAGGTTTAATACTTCTCCCCGACGGTAAGTTGCATCTAGATCAGAACCAAGTAAAGCATAGGTACATTATCCTACAGGAGACAATCGAAAATACCACATTCGTAGTCGACACCAAATCAGGTCAGAAAATTGATGGGGCAATTGTTTTGGACAATGGTCTCGTCAAGCTACCCAATGGAAATCTGGTTGCACCCAGCTCAAACACAAGCACAAATTACATGGTGGTCGAATCGACTGAGGGCGAAGAGAATCCAGTGGTATTCGATCGCAGGACAGGTGAGCAAATCTCAGATGCTTACCTAGATAAGGATGGTGTCATACATTTGCCAGATGGAAGTTTGGCTATCTCGGCGTCAGAAACTATGGATCGCTACCTTGTGGCACNNAGATAACTGACAGGAGACCCTGTGATTTTCGATCGACGCCTCGNAACAGAACTAGTAAATGCTACGCTCCACCCATATGGAATGATCAANTTAGACACTGGACAGCTCGTAGCTCCCTCTCTCGGGAAAGGTC]

[+] EMBL CD131925             [AACTGACAGGAGACCGTGTGATTTTCGATCGACGCCTCGGAACAGAACTAGTAAATGCTACGCTCCACCATAATGGAATGATCAAATTAGACACTGGACAGCTCGTAGCTCCCTCCTCTCGGGAAGGCTCTAAATACATGTTGGTCACAGATGAAGACAACCAAACCCTTCTAGTTTACGATCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD071062             [                                          CAGAACTAGTAAATGCTACGCTCCACCATAATGGAATGATCAAATTAGACACTGGACAGCTCGTAGCTCCCCCCTCTCGGGAAGGCTCTAAATACATGTTGGTCACAGATGAAGACAACCAAACCCTTCTAGTTTACGATCGTTTTACAGGAGAACAGATCAAGGGTGCACAGGTTGATCCCAACGGTTTGATTCTGTTCGAAGATGGACGCATGGCCATTGAGCCATCATCTAAACTAGATAGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD071093             [                                          CAGAACTAGTAAATGCTACGCTCCACCATAATGGAATGATCAAATTAGACACTGGACAGCTCGTAGCTCCCTCCTCTCGGGAAGGCTCTAAATACATGTTGGTCACAGATGAAGACAACCAAACCCTTCTAGTTTACGATCGTTTTACAGGAGAACAGATCAAGGGTGCACAGGTTGATCCCAACGGTTTGATTCTGTTCGAAGATGGACGCATGGCCATTGAGCCATCATCTAAACTAGATAGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD068767             [                                                                                                                              GCTCTAAATACATGTTGGTCACAGATGAAGACAACCAAACCCTTCTAGTTTACGATCGTTTTACAGGAGAACGGATCAAGGGTGCACAGGTTGATCCCAACGGTTTGATTCTGTTCGAAGATGGACGCATGGCCATTGAGCCATCATCTAAACTAGATAGATATGTTATAATGACGGACCCAAACAACGGTGAAAAACTGGTTTTCGACAGACGAACAGGTAGTCATGTCAAGGATGCTGTGTACAGTGAAGATGGGTTGATCCGCTTTCCAGACGGTAGGCGCGTTGCACCAGGTTCCACTGACAACAGTTCACAGTATCTAATTCACTTCGACTCTGCAACGAAGGAGAACTTGGTTTTTGACAGACATACTGGTGAACAAGTCGAGGGCGCCCCAGTAGATTCACGAGGTTTAATACTTCTCCCCGACGGTAAGTTGCATCTAGATCAGAACCAAGTAAAGCATTGGTACATTATCCTACAGGAGACAATCGAAAATACCACATTCGTAGTCGACACCAAATCAGGTCAGAAAATTGATGGGGCAATTGTTTTGGACAATGGTCTCGTCAAGCTACCCAATGGAAATCTGGTTGCACCCAGCTCAAA                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD068768             [                                                                                                                              GCTCTAAATACATGTTGGTCACAGATGAAGACAACCAAACCCTTCTAGTTTACGATCGTTTTACAGGAGAACGGATCAAGGGTGCACAGGTTGATCCCAACGGTTTGATTCTGTTCGAAGATGGACGCATGGCCATTGAGCCATCATCTAAACTAGATAGATATGTTATAATGACGGACCCAAACAACGGTGAAAAACTGGTTTTCGACAGACGAACAGGTAGTCATGTCAAGGATGCTGTGTACAGTGAAGATGGGTTGATCCGCTTTCCAGACGGTAGGCGCGTTGCACCAGGTTCCACTGACAACAGTTCACAGTATCTAATTCACTTCGACTCTGCAACGAAGGAGAACTTGGTTTTTGACAGACATACTGGTGAACAAGTCGAGGGCGCCCCAGTAGATTCACGAGGTTTAATACTTCTCCCCGACGGTAAGTTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD135104             [                                                                                                                                                                                                                                                                                                        ATGACGGACCCAAACAACGGTGAAAAACTGGTTTTCGACAGACGAACAGGTAGTCATGTCAAGGATGCTGTGTACAGTGAAGATGGGTTGATCCGCTTTCCAGACGGTAGGCGCGTTGCACCAGGTTCCACTGACAACAGTTCACAGTATCTAATTCACTTCGACTCTGCAACGAAGGAGAACTTGGTTTTTGACAGACATACTGGTGAACAAGTCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD182195             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GTAAAGCATAGGTACATTATCCTACAGGAGACAATCGAAAATACCACATTCGTAGTCGACACCAAATCAGGTCAGAAAATTGATGGGGCAATTGTTTTGGACAATGGTCTCGTCAAGCTACCCAATGGAAATCTGGTTGCACCCAGCTCAAACACAAGCACAAATTACATGGTGGTCGAATCGACTGAGGGCGAAGAGAAT                                                                                                                                                                                                                                                                            ]
[+] EMBL CD130325             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AGGTACATTATCCTACAGGAGACAATCGAAAATACCACATTCGTAGTCGACACCAAATCAGGTCAGAAAATTGATGGGGCAATTGTTTTGGACAATGGTCTCGTCAAGCTACCCAATGGAAATCTGGTTGCACCCAGCTCAAACACAAGCACAAATTACATGGTGGTCGAATTGACTGAGGGCGAAGAGAATCCAGTGGTATTCGATCGCAGGACAGGTGAGCAAATCTCAGATGCTTACCTAGATAAGGATGGTGTCATACATTTGCCAGATGGAAGTTTGGCTATCTCGGCGTCAGAAACTATGGATCGCTACCTTGTGGCACNNAGATAACTGACAGGAGACCCTGTGATTTTCGATCGACGCCTCGNAACAGAACTAGTAAATGCTACGCTCCACCCATATGGAATGATCAANTTAGACACTGGACAGCTCGTAGCTCCCTCTCTCGGGAAAGGTC]




>consensus_9673#0
AACTGACAGGAGACCGTGTGATTTTCGATCGACGCCTCGGAACAGAACTAGTAAATGCTA
CGCTCCACCATAATGGAATGATCAAATTAGACACTGGACAGCTCGTAGCTCCCTCCTCTC
GGGAAGGCTCTAAATACATGTTGGTCACAGATGAAGACAACCAAACCCTTCTAGTTTACG
ATCGTTTTACAGGAGAACAGATCAAGGGTGCACAGGTTGATCCCAACGGTTTGATTCTGT
TCGAAGATGGACGCATGGCCATTGAGCCATCATCTAAACTAGATAGATATGTTATAATGA
CGGACCCAAACAACGGTGAAAAACTGGTTTTCGACAGACGAACAGGTAGTCATGTCAAGG
ATGCTGTGTACAGTGAAGATGGGTTGATCCGCTTTCCAGACGGTAGGCGCGTTGCACCAG
GTTCCACTGACAACAGTTCACAGTATCTAATTCACTTCGACTCTGCAACGAAGGAGAACT
TGGTTTTTGACAGACATACTGGTGAACAAGTCGAGGGCGCCCCAGTAGATTCACGAGGTT
TAATACTTCTCCCCGACGGTAAGTTGCATCTAGATCAGAACCAAGTAAAGCATAGGTACA
TTATCCTACAGGAGACAATCGAAAATACCACATTCGTAGTCGACACCAAATCAGGTCAGA
AAATTGATGGGGCAATTGTTTTGGACAATGGTCTCGTCAAGCTACCCAATGGAAATCTGG
TTGCACCCAGCTCAAACACAAGCACAAATTACATGGTGGTCGAATCGACTGAGGGCGAAG
AGAATCCAGTGGTATTCGATCGCAGGACAGGTGAGCAAATCTCAGATGCTTACCTAGATA
AGGATGGTGTCATACATTTGCCAGATGGAAGTTTGGCTATCTCGGCGTCAGAAACTATGG
ATCGCTACCTTGTGGCACNNAGATAACTGACAGGAGACCCTGTGATTTTCGATCGACGCC
TCGNAACAGAACTAGTAAATGCTACGCTCCACCCATATGGAATGATCAANTTAGACACTG
GACAGCTCGTAGCTCCCTCTCTCGGGAAAGGTC

consensusID : consensus_9673#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 352
fasta sequence

                              [TACCACATTCGTAGTCGACACCAAATCAGGTCAGAAAATTGATGGGGCAATTGTTTTGGACAATGGTCTCGTCAAGCTACCCAATGGAAATCTGGTTGCACCCAGCTCAAACACAAGCACAAATTACATGGTGGTCGAATTGACTGAGGGCGAAGAGAATCCAGTGGTATTCGATCGCAGGACAGGTGAGCAAATCTCAGATGCTTACCTAGATAAGGATGGTGTCATACATTTGCCAGATGGAAGTTTGGCTATCTCGGCGTCAGAAACTATGGATCGCTACCTTGTGGCACAAGATAAACTGACAGGAGACCCTGTGATTTTCTGATCGACGCCTGGGGCTCCCGCAGAN]

[-] EMBL CD189222             [TACCACATTCGTAGTCGACACCAAATCAGGTCAGAAAATTGATGGGGCAATTGTTTTGGACAATGGTCTCGTCAAGCTACCCAATGGAAATCTGGTTGCACCCAGCTCAAACACAAGCACAAATTACATGGTGGTCGAATTGACTGAGGGCGAAGAGAATCCAGTGGTATTCGATCGCAGGACAGGTGAGCAAATCTCAGATGCTTACCTAGATAAGGATGGTGTCATACATTTGCCAGATGGAAGTTTGGCTATCTCGGCGTCAGAAACTATGGATCGCTACCTTGTGGCACAAGATAAACTGACAGGAGACCCTGTGATTTTCTGATCGACGCCTGGGGCTCCCGCAGAN]
[-] EMBL CD186718             [                                                                                ctagTGGAAATCTGGTTGCACCCAGCTCAAACACAAGCACAAATTACATGGTGGTCGAATTGTCTGAGGGCGAAGAGAATCCAGTGGTATTCGATCGCAGGACAGGTGAGCAAATCTCAGATGCTTACCTAGATAAGGATGGTGTCATACATTTGCCAGATGGAAGTTTGGCTATCTCGGCGTCAGAAACTATGGATCGCTACCTTGTGGCACAAGATAAACTGACAGGAGACCCTGTGATTTTC GATCGAC                   ]




>consensus_9673#1
TACCACATTCGTAGTCGACACCAAATCAGGTCAGAAAATTGATGGGGCAATTGTTTTGGA
CAATGGTCTCGTCAAGCTACCCAATGGAAATCTGGTTGCACCCAGCTCAAACACAAGCAC
AAATTACATGGTGGTCGAATTGACTGAGGGCGAAGAGAATCCAGTGGTATTCGATCGCAG
GACAGGTGAGCAAATCTCAGATGCTTACCTAGATAAGGATGGTGTCATACATTTGCCAGA
TGGAAGTTTGGCTATCTCGGCGTCAGAAACTATGGATCGCTACCTTGTGGCACAAGATAA
ACTGACAGGAGACCCTGTGATTTTCTGATCGACGCCTGGGGCTCCCGCAGAN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9673#0      AACTGACAGGAGACCGTGTGATTTTCGATCGACGCCTCGGAACAGAACTAGTAAATGCTA 60
consensus_9673#1      ------------------------------------------------------------
                                                                                  

consensus_9673#0      CGCTCCACCATAATGGAATGATCAAATTAGACACTGGACAGCTCGTAGCTCCCTCCTCTC 120
consensus_9673#1      ------------------------------------------------------------
                                                                                  

consensus_9673#0      GGGAAGGCTCTAAATACATGTTGGTCACAGATGAAGACAACCAAACCCTTCTAGTTTACG 180
consensus_9673#1      ------------------------------------------------------------
                                                                                  

consensus_9673#0      ATCGTTTTACAGGAGAACAGATCAAGGGTGCACAGGTTGATCCCAACGGTTTGATTCTGT 240
consensus_9673#1      ------------------------------------------------------------
                                                                                  

consensus_9673#0      TCGAAGATGGACGCATGGCCATTGAGCCATCATCTAAACTAGATAGATATGTTATAATGA 300
consensus_9673#1      ------------------------------------------------------------
                                                                                  

consensus_9673#0      CGGACCCAAACAACGGTGAAAAACTGGTTTTCGACAGACGAACAGGTAGTCATGTCAAGG 360
consensus_9673#1      ------------------------------------------------------------
                                                                                  

consensus_9673#0      ATGCTGTGTACAGTGAAGATGGGTTGATCCGCTTTCCAGACGGTAGGCGCGTTGCACCAG 420
consensus_9673#1      ------------------------------------------------------------
                                                                                  

consensus_9673#0      GTTCCACTGACAACAGTTCACAGTATCTAATTCACTTCGACTCTGCAACGAAGGAGAACT 480
consensus_9673#1      ------------------------------------------------------------
                                                                                  

consensus_9673#0      TGGTTTTTGACAGACATACTGGTGAACAAGTCGAGGGCGCCCCAGTAGATTCACGAGGTT 540
consensus_9673#1      ------------------------------------------------------------
                                                                                  

consensus_9673#0      TAATACTTCTCCCCGACGGTAAGTTGCATCTAGATCAGAACCAAGTAAAGCATAGGTACA 600
consensus_9673#1      ------------------------------------------------------------
                                                                                  

consensus_9673#0      TTATCCTACAGGAGACAATCGAAAATACCACATTCGTAGTCGACACCAAATCAGGTCAGA 660
consensus_9673#1      -------------------------TACCACATTCGTAGTCGACACCAAATCAGGTCAGA 35
                                               ***********************************

consensus_9673#0      AAATTGATGGGGCAATTGTTTTGGACAATGGTCTCGTCAAGCTACCCAATGGAAATCTGG 720
consensus_9673#1      AAATTGATGGGGCAATTGTTTTGGACAATGGTCTCGTCAAGCTACCCAATGGAAATCTGG 95
                      ************************************************************

consensus_9673#0      TTGCACCCAGCTCAAACACAAGCACAAATTACATGGTGGTCGAATCGACTGAGGGCGAAG 780
consensus_9673#1      TTGCACCCAGCTCAAACACAAGCACAAATTACATGGTGGTCGAATTGACTGAGGGCGAAG 155
                      ********************************************* **************

consensus_9673#0      AGAATCCAGTGGTATTCGATCGCAGGACAGGTGAGCAAATCTCAGATGCTTACCTAGATA 840
consensus_9673#1      AGAATCCAGTGGTATTCGATCGCAGGACAGGTGAGCAAATCTCAGATGCTTACCTAGATA 215
                      ************************************************************

consensus_9673#0      AGGATGGTGTCATACATTTGCCAGATGGAAGTTTGGCTATCTCGGCGTCAGAAACTATGG 900
consensus_9673#1      AGGATGGTGTCATACATTTGCCAGATGGAAGTTTGGCTATCTCGGCGTCAGAAACTATGG 275
                      ************************************************************

consensus_9673#0      ATCGCTACCTTGTGGCACNNAGATAACTGACAGGAGACCCTGTGATTTTC-GATCGACGC 959
consensus_9673#1      ATCGCTACCTTGTGGCACAAGATAAACTGACAGGAGACCCTGTGATTTTCTGATCGACGC 335
                      ******************      ************************** *********

consensus_9673#0      CTCGNAACAGAACTAGTAAATGCTACGCTCCACCCATATGGAATGATCAANTTAGACACT 1019
consensus_9673#1      CTGGG----GCTCCCGCAGAN--------------------------------------- 352
                      ** *     *  *  * * *                                        

consensus_9673#0      GGACAGCTCGTAGCTCCCTCTCTCGGGAAAGGTC 1053
consensus_9673#1      ----------------------------------