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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9674#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 988 fasta sequence
[AATCCAGATTTGTCTTCTGCACGCGCATTCTTTCGTCTAGTGGATTCTATTCGAGCGCGCCTTGAACCCCAAACCGTCTTAAGAATAGCTGAAACTGCCTCACAAAGTCGTGGTCGACGTCTTTCATTATCAGAACCATTTGATAATGATGGGGTAAGAGATGAAAGAGATGAAGATGCATCTAGTGATGATAGTCACTCTGATCATAGTGATGAGGAGCGTCGTGGAAAAAGCCCCATTGATACCATTCCTCTGTCAGATCCTGAGTTTGATGAACTAGATGATCCTGAGCCTGCTAAACAAGAAATGCGCTCTCGTCTTAAAGCACGTCGACGAATTTTACGGGAAAGTGCAATGAAACGTAATTTGAAAATATCATCAGAAGATAATGCCGATGAACAGGTTGGTGTAAGAAGTGATTCTGTCGAAAAGTTGCCATTTACCACAGCACCTCAAGTGTCTGAACTTTCTCCTGGAGTGACAAATTTAGCTATTGAATTATTTTATTC-TGCTATGTTGATCGCTGGTCATAAAACAATCAGTCACACATTTGCATTCATAAAAAAGTATGCTGCTGTCATCCGGACTCTTACATCTACCGTTGAAACTCAAGTAGAAGCTTTACATGTAATTCAGGCGGTCTGGGCTAATAATCCACAAATGATTGTCATTATTACAGAACACATGTGTCGTGTTGGTTTGATTGATCCGGAAGCGGTTGTTCGATGGGCATATTCACCTATAATGACAACTTTAACAGATGATACAGTCAATTTGAACTCTGCTAATGCTCGTCCAAAAATTTTAGACTTTTACGTTTGGGAGTGCTTAAGTCGAACTCTTGTTCGTGTTGGTAGGCGCGTTACTCGAATTACAAATAGACTAGAACTGGCAAAAGAAACGATGGAAATTAACAGGCGTTCTTCTCCATATTCGACTCCTGATCGTGAAGACGCTGACCAGGGAGGAGATGGTGATAGTTTCTCAC]
[+] EMBL CD156540 [AATCCAGATTTGTCTTCTGCACGCGCATTCTTTCGTCTAGTGGATTCTATTCGAGCGCGCCTTGAACCCCAAACCGTCTTAAGAATAGCTGAAACTGCCTCACAAAGTCGTGGTCGACGTCTTTCATTATCAGAACCATTTGATAATGATGGGGTAAGAGATGAAAGAGATGAAGATGCATCTAGTGATGATAGTCACTCTGATCATAGTGATGAGGAGCGTCGTGGAAAAAGCCCCATTGATACCATTCCTCTGTCAGATCCTGAGTTTGATGAACTAGATGATCCTGAGCCTGCTAAACAAGAAATGCGCTCTCGTCTTAAAGCACGTCGACGAATTTTACGGGAAAGTGCAATGAAACGTAATTTGAAAATATCATCAGAAGATAATGCCGATGAACAGGTTGGTGTAAGAAGTGATTCTGTCGAAAAGTTGCCATTTACCACAGCACCTCAAGTGTCTGAACTTTCTCCTGGAGTGACAAATTTAGCTATTGAATTATTTTATTC TGCTATGTTGATCGCTGGTCAT AAACAATCAGTCACACATTTGCATTCATAAAAAAGTATGCTGCTGTCATCCGGACTCTTACATCTACCGT ]
[+] EMBL CD063942 [ TCTGTCAGATCCTGAGTTTGAT ACTAGAT ATCCTGAGCCTGCTAAACAAGAAATGCGCTCTCGTCTTAAAGCACGTCGACGAATTTTACGGGAAAGTGCAATGAAACGTAATTTGAAAATATCATCAGAAGATAATGCCGATGAACAGGTTGGTGTAAGAAGTGATTCTGTCGAAAAGTTGCCATTTACCACAGCACCTCAAGTGTCTGAACTTTCTCCTGGAGTGACAAATTTAGCTATTGAATTATTTTATTC TGCTATGTTGATCGCTGGTCATAAAACAATCAGTCACACATTTGCATTCATAAAAAAGTATGCTGCTGTCATCCGGACTCTTACATCTACCGTTGAAACTCAAGTAGAAGCTTTACATGTAATTCAGGCGGTCTGGGCTAATAATCCACAAATGATTGTCATTATTACAGAACACATTTGTCGTGTTGGggataacat ]
[+] EMBL CD112679 [ GTCTGAACTTTCTCCTGGAGTGACAAATTTAGCTATTGAATTATTTTATTCNTGCTATGTTGATCGCTGGTCATAAAACAATCAGTCACACATTTGCATTCATAAAAAAGTATGCTGCTGTCATCCGGACTCTTACATCTACCGTTGAAACTCAAGTAGAAGCTTTACATGTAATTCAGGCGGTCTGGGCTAATAATCCACAAATGATTGTCATTATTACAGAACACATGTGTCGTGTTGGTTTGATTGATCCGGAAGCGGTTGTTCGATGGGCATATTCACCTATAATGACAACTTTAACAGATGATACAGTCAATTTGAACTCTGCTAATGCTCGTCCAAAAATTTTAGACTTTTACGTTTGGGAGTGCTTAAGTCGAACTCTTGTTCGTGTTGGTAGGCGCGTTACTC ]
[+] EMBL CD189750 [ TTTAGCTATTGAATTATTTTATTC TGCTATGTTGATCGCTGGTCATAAAACAATCAGTCACACATTTGCATTCATAAAAAAGTATGCTGCTGTCATCCGGACTCTTACATCTACCGTTGAAACTCAAGTAGAAGCTTTACATGTAATTCAGGCGGTCTGGGCTAATAATCCACAAATGATTGTCATTATTACAGAACACATGTGTCGTGTTGGTTTGATTGATCCGGAAGCGGTTGTTCGATGGGCATATTCACCTATAATGACAACTTTAACAGATGATACAGTCAATTTGAACTCTGCTAATGCTCGTCCAAAAATTTTAGACTTTTACGTTTGGGAGTGCTTAAGTCGAACTCTTGTTCGTGTTGGTAGGCGCGTTACTCGAATTACAAATAGACTAGAACTGGCAAAAGAAACGATGGAAATTAACAGGCGTTCTTCTCCATATTCGACTCCTGATCGTG ]
[+] EMBL CD133064 [ TTTAGCTATTGAATTATTTTATTC TGCTATGTTGATCGCTGGTCATAAAACAATCAGTCACACATTTGCATTCATAAAAAAGTATGCTGCTGTCATCCGGACTCTTACATCTACCGTTGAAACTCAAGTAGAAGCTTTACATGTAATTCAGGCGGTCTGGGCTAATAATCCACAAATGATTGTCATTATTACAGAACACATGTGTCGTGTTGGTTTGATTGATCCGGAAGCGGTTGTTCGATGGGCATATTCACCTATAATGACAACTTTGACAGATGATACAGTCAATTTGAACTCTGCTAATGCTCGTCCAAAAATTTTAGACTTTTACGTTTGGGAGTGCTTAAGTCGAACTCTTG ]
[+] EMBL CD163429 [ AAAGTATGCTGCTGTCATCCGGACTCTTACATCTACCGTTGAAACTCAAGTAGAAGCTTTACATGCTATTCAGGCGGTCTGGGCTAATAATCCACAAATGATTGTCATTATTACAGAACACATGTGTCGTGTTGGTTTGATTGATCCGGAAGCGGTTGTTCGATGGGCATATTCACCTATAATGACAACTTTAACAGATGATACAGTCAATTTGAACTCTGCTAATGCTCGTCCAAAAATTTTAGACTTTTACGTTTGGGAGTGCTTAAGTCGAACTCTTGTTCGTGTTGGTAGGCGCGTTACTCGAATTACAAATAGACTAGAACTGGCAAAAGAAACGATGGAAATTAACAGGCGTTCTTCTCCATATTCGACTCCTGATCGTGAAGACGCTGACCAGGGAGGAGATGGTGATAGTTTCTCAC]
consensusID : consensus_9674#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 739 fasta sequence
[GCCAANACTCGGCTCGAGGGCCAATTTGAACTCTGCTAATGCTCGTCCAAAAATTTTAGACTTTTACGTTTGGGAGTGCTTAAGTCGAACTCTTGTTCGTGTTGGTAGGCGCGTTACTCGAATTACAAATAGACTAGAACTGGCAAAAGAAACGATGGAAATTAACAGGCGTTCTTCTCCATATTCGACTCCTGATCGTGAAGACGCTGACCAGGGAGGAGATGGTGATAGTTTCTCACGAACTGGAGTCGACAGTGATTCATTCTTTAAAAAACCGAAAGATTCCATTTCTGGGAGAGTTAAAGTCAGTGATCGACGAAAGCTTATGGCAGGCTGTGAACTGGTTTCTTCGTCTGACGATGAGGCTTATGGTGGAGGAAAGGATAATGTCGGTGGTCGAGTAGCCAGACTAGAAGAAGCCAGATGTGAAGCAGTTCGTAGTCAATGTGCTGTCATTACACTTCTTCTGCATCGTCATGCTAGACTTACTGCTGAACTTGCATCTGAAATGTCTGGACCTTCTCAAAACCATTCATTCAATACGGATTCTCCATTTTTCTTACATGAACCAACTCAACCGAAAAGTTTGTCTGACGAAGCTTTAAGAAATATAATGTTTTGGTTAAAAGGTCGGTTAGTGCAGGTGGTTCTTGACATTGCGATCAATAATACCTTATCTGGATAACCTTGATGAATTTATTTGTGGAGCTCATCCTGAAGTTCAAGGCGTGTTTCAGCA]
[+] EMBL CD080706 [GCCAANACTCGGCTCGAGGGCCAATTTGAACTCTGCTAATGCTCGTCCAAAAATTTTAGACTTTTACGTTTGGGAGTGCTTAAGTCGAACTCTTGTTCGTGTTGGTAGGCGCGTTACTCGAATTACAAATAGACTAGAACTGGCAAAAGAAACGATGGAAATTAACAGGCGTTCTTCTCCATATTCGACTCCTGATCGTGAAGACGCTGACCAGGGAGGAGATGGTGATAGTTTCTCACGAACTGGAGTCGACAGTGATTCATTCTTTAAAAAACCGAAAGATTCCATTTCTGGGAGAGTTAAAGTCAGTGATCGACGAAAGCTTATGGCAGGCTGTGAACTGGTTTCTTCGTCTGACGATGAGGCTTATGGTGGAGGAAAGGATAATGTCGGTGGTCGAGTAGCCAGACTAGAAGAAGCCAGATGTGAAGCAGTTCGTAGTCAATGTGCTGTCATTACACTTCTTCTGCATCGTCATGCTAGACTTACTGCTGAACTTGCATCTGAAATGTCTGGACCTTCTCAAAACCATTCATTCAATACGGATTCTCCATTTTTCTTACATGAACCAACTCAACCGAAAAGTTTGTCTGACGAAGCTTTAAGAAATATAATGTTTTGGTTAAAAGGTCGGTTAGTGCAGGTGGTTCTTGACATTGCGATCAATAATACCTTATCTGGATAACCTTGATGAATTTATTTGTGGAGCTCATCCTGAAGTTCAAGGCGTGTTTCAGCA]
[+] EMBL CD111958 [ CTGACCAGGGAGGAGATGGTGATAGTTTCTCACGAACTGGAGTCGACAGTGATTCATTCTTTAAAAAACCGAAAGATTCCATTTCTGGGAGAGTTAAAGTCAGTGATCGACGAAAGCTTATGGCAGGCTGTGAACTGGTTTCTTCGCCTGACGATGAG ]
[-] EMBL CD133649 [ AAGGATAATGTCGGTGGTCGAGTAGCCAGACTAGAAGAAGCCAGATGTGAAGCAGTTCGTAGTCAATGTGCTGTCATTACACTTTTTCTGCATCGTCATGCTAGACTTACTGCTGAACTTGCATCTGAAATGTCTGGACCTTCTCAAAACCATTCATTCAATACGGATTCTCCATTTTTCTTACATGAACCAACTCAACCGAAAAGTTTGTCTGACGAAGCTTTAAGAAATATAATGTTTTGGTTAAAAGGT ]
consensusID : consensus_9674#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence
[GTGATAGTTTCTCACGAACTGGAGTCGACAGTGATTCATTCTTTAAAAAACCGAAAGATTCCATTTCTGGGAGAGTTAAAGTCAGTGATCGACGAAAGCTTATGGCAGGCTGTGAACTGGTTTCTTCGTCTGACGATGAGGCTTATGGTGGAGGAAAGGATAATGTCGGTGGTCGAGTAGCCAGACTAGAAGAAGCCTAGTATCAGAATTCTTGACCTTTATTTATTTTCCTTGAAAAAGTAGTTACTTCTAAGTACTGTTTTCATTTCTTTCCTTTTGAATCATAGTAATTCAAAATATTGTTTCCTTTTTAGATTCTTAGGCTAGTTTAGTGAACTTTGCCATCTTGAGAAATAAGCGGCCGACAGGATCTTGAGGTTTTTTTATCTAAGTATGTAGGTCTTCATTAATAACTTTTTTTTCCGGGCAAATATTTCCTAGGTTTCTTCAGGTTAACAAATAAATGAATTATTTTGGTTTGGCAATTCTGGTAAATGCTTCATATTCGACTCCTGATCGTGA]
[+] EMBL CD188823 [GTGATAGTTTCTCACGAACTGGAGTCGACAGTGATTCATTCTTTAAAAAACCGAAAGATTCCATTTCTGGGAGAGTTAAAGTCAGTGATCGACGAAAGCTTATGGCAGGCTGTGAACTGGTTTCTTCGTCTGACGATGAGGCTTATGGTGGAGGAAAGGATAATGTCGGTGGTCGAGTAGCCAGACTAGAAGAAGCCTAGTATCAGAATTCTTGACCTTTATTTATTTTCCTTGAAAAAGTAGTTACTTCTAAGTACTGTTTTCATTTCTTTCCTTTTGAATCATAGTAATTCAAAATATTGTTTCCTTTTTAGATTCTTAGGCTAGTTTAGTGAACTTTGCCATCTTGAGAAATAAGCGGCCGACAGGATCTTGAGGTTTTTTTATCTAAGTATGTAGGTCTTCATTAATAACTTTTTTTTCCGGGCAAATATTTCCTAGGTTTCTTCAGGTTAACAAATAAATGAATTATTTTGGTTTGGCAATTCTGGTAAATGCTTCATATTCGACTCCTGATCGTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9674#1 ------------------------------------------------------------
consensus_9674#2 ------------------------------------------------------------
consensus_9674#0 AATCCAGATTTGTCTTCTGCACGCGCATTCTTTCGTCTAGTGGATTCTATTCGAGCGCGC 60
consensus_9674#1 ---------------------------GCCAANACTCGGCTCGAGGGCCAATTTGAACTC 33
consensus_9674#2 ------------------------------------------------------------
consensus_9674#0 CTTGAACCCCAAACCGTCTTAAGAATAGCTGAAACTGCCTCACAAAGTCGTGGTCGACGT 120
consensus_9674#1 TGCTAATGCTCGTCCAAAAATTTTAGACTTTTACGTTTGGGAGTGCTTAAGTCGAACTCT 93
consensus_9674#2 ------------------------------------------------------------
consensus_9674#0 CTTTCATTATCA--GAACCATTTGATAATGATGGGGTAAGAGATGAAAGAGATGAAGATG 178
consensus_9674#1 TGTTC-GTGTTGGTAGGCGCGTTACTCG-AATTACAAATAGACTAGAACTGGCAAAAGAA 151
consensus_9674#2 ------------------------------------------------------------
consensus_9674#0 CATCTAGTGATGATAGTCACTCTGATCATAGTGATGAGGAGCGTCGTGGAAAAAGCCCCA 238
consensus_9674#1 ACGATGGAAATTAACAGGC-GTTCTTCTCCATATTCGACTCC-TGATCGTGAAGACGCTG 209
consensus_9674#2 ------------------------------------------------------------
consensus_9674#0 TTGATACCATTCCTCTGTCAGATCCTGAGTTTGATGAACTAGATGATCCTGAGCCTGCTA 298
consensus_9674#1 ACCAGGGAGGAGATGGTGAT-----AGTTTCTC-ACGAACT-----GGAGTCGACAGTGA 258
consensus_9674#2 ---------------GTGAT-----AGTTTCTC-ACGAACT-----GGAGTCGACAGTGA 34
consensus_9674#0 AACAAGAAATGCGCTCTCGTCTTAAAGCACGTCGACGAATTTTACGGGAAAGTGCAATGA 358
* * ** ** ***** * *** ** ***
consensus_9674#1 TTCATTCTTTAAAAA----ACCGAAAGATTCCATTTCTGGGAGAGTTAAAGTCAGTGATC 314
consensus_9674#2 TTCATTCTTTAAAAA----ACCGAAAGATTCCATTTCTGGGAGAGTTAAAGTCAGTGATC 90
consensus_9674#0 AACGTAATTTGAAAATATCATCAGAAGATAATGCCGATGAACAGGTTGGTGTAAG-AAGT 417
* * *** **** * * ***** ** *** ** ** *
consensus_9674#1 GACGAAAGCTTATGGCAGGCTGTGAACTGGTTTCTTCGTCTGACGATGAGGCTTATGGTG 374
consensus_9674#2 GACGAAAGCTTATGGCAGGCTGTGAACTGGTTTCTTCGTCTGACGATGAGGCTTATGGTG 150
consensus_9674#0 GATTCTGTCGAAAAGTTGCCATTTACCACAGCACCTCAAGTGTC--TGAACTTTCTCCTG 475
** * * * * * * * * * ** ** * *** ** * **
consensus_9674#1 GAGGAAAGGATAATGTCGGTGG-TCGAGTAGCCAGACTAGAAGAA--GCCAGATGTGAAG 431
consensus_9674#2 GAGGAAAGGATAATGTCGGTGG-TCGAGTAGCCAGACTAGAAGAA--GCCTAGTATCAGA 207
consensus_9674#0 GAGTGACAAATTTAGCTATTGAATTATTTTATTCTGCTATGTTGATCGCTGGTCATAAAA 535
*** * ** * ** * * *** * ** * *
consensus_9674#1 CAGTTCGTAGTCAATGTGCTGTCATTACA-------CTTCTTCT--GCATCGTCATGCTA 482
consensus_9674#2 ATTCTTGACCTTTATTTATTTTCCTTGAAAAAGTAGTTACTTCTAAGTACTGTTTTCATT 267
consensus_9674#0 CAATCAGTCACACATTTGCATTCATAAAAAAG---TATGCTGCTGTCATCCGGACTCTTA 592
* ** * ** * * * ** ** * * *
consensus_9674#1 GACTTACTGCTGAAC--TTGCATCTGAAATGTCTGGACCTTCTCAAAACCAT-TCATTCA 539
consensus_9674#2 TCTTTCCTTTTGAATCATAGTAATTCAAAATATTGTTTCCTTTTTAGATTCT-TAGGCTA 326
consensus_9674#0 CATCTACCGTTGAAA---CTCAAGTAGAAGCTTTACATGTAATTCAGGCGGTCTGGGCTA 649
* * **** * * ** * * * * * *
consensus_9674#1 AT---ACGGATTCTCCATTTTTCTTACATGAAC---CAACTCAACCGAAAAGTTTGTCTG 593
consensus_9674#2 GTTTAGTGAACTTTGCCATCTTGAGAAATAAGCGGCCGACAGGATCTTGAGGTTTTTTTA 386
consensus_9674#0 AT-------AATCCACAAATGATTGTCATTATTACAGAACACATGTGTCGTGTTGGTTTG 702
* * * * ** * ** *** * *
consensus_9674#1 ACGAAGCTTTAAGAAATA---TAATG-----TTTTGGTTAAAAGGTCGGTTAGTGCAGGT 645
consensus_9674#2 TCTAAGTATGTAGGTCTTCATTAATA-----ACTTTTTTTTCCGGGCAAATATTTCCTAG 441
consensus_9674#0 ATTGATCCGGAAGCGGTTGTTCGATGGGCATATTCACCTATAATGACAACTTTAACAGAT 762
* ** * ** * * * * * *
consensus_9674#1 GGTTCT-TGACATTGCGATCAATAA-TACCTTATCTGGATAACCTTGATGAATTTATTTG 703
consensus_9674#2 GTTTCT-TCAGGTTA--ACAAATAAATGAATTATTTTGGT----TTGGCAATTCTGGTAA 494
consensus_9674#0 GATACAGTCAATTTGAACTCTGCTAATGC-TCGTCCAAAAATTTTAGACTTTTACGTTTG 821
* * * * * ** * * * * * * * *
consensus_9674#1 TG-GAGCTCATCCTGAAGTTCAAGGCGTGTTTCAGCA----------------------- 739
consensus_9674#2 AT-GC-TTCATATTCGACTCCTGATCGTGA------------------------------ 522
consensus_9674#0 GGAGTGCTTAAGTCGAACTCTTGTTCGTGTTGGTAGGCGCGTTACTCGAATTACAAATAG 881
* * * * * ****
consensus_9674#1 ------------------------------------------------------------
consensus_9674#2 ------------------------------------------------------------
consensus_9674#0 ACTAGAACTGGCAAAAGAAACGATGGAAATTAACAGGCGTTCTTCTCCATATTCGACTCC 941
consensus_9674#1 -----------------------------------------------
consensus_9674#2 -----------------------------------------------
consensus_9674#0 TGATCGTGAAGACGCTGACCAGGGAGGAGATGGTGATAGTTTCTCAC 988
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||