|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9680#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1017 fasta sequence
[TGGACGCTCACAATGTTACTGTCAAGGCCGATTAATATTAAATTCAAAGGGTTCGCCTGTTTATTAAGGCAGTTTCGCTCATCATTTAATTCGCATTCTGATTTGGAGGATGGGAAGTTGGTCAACGTTGTCGTTGTTTCCAACTCGAATTCTACCCAAAAATGGCCGAATACTAAGCTCGGACCAATAGATACTATCAATCCTAAATATCCATTGCCTGGGTTTGTAGGGATTCCGTTAGAGAATGATGAGAAACCTTTTGAAAAGAAATACACACCTGCGGTGCATACATTACCTCCAATAAAAGAGGAGAGCTATGCTGCAGCTCTTTTGAATGTTTACAATGAAAAAGAGTTCAGTGAATCTCGGCCTTCAATAATTCCACCGATATCAGATCAA-TTTGAATGTA-CCATACACAC-TTGTCCAGT-GCTAGTTCAGCAAGC-TTTAGCTAATGTA-TTTCCATCGAGAAAACTTTCATTCAAACCTTTAACAGCATTAATTCTTAGTCGTCACACTAATGATGAATCGTTAGATGGATGGAGTGAGGAAGAAGCTGCAGATGAACATGAACAATTAGCACGATCTTTTATTACTTCAGC-AATAGAAATATGCTCATCATTAAAAGAATTAGGCTATTGGGCAGATTTTATTGATCCGTTCACTGGGAAACCGTATATTGGAGCCCATGGCGAAGCTATACTCAAAGAAACCGATGAAACAATGAAACATTTTGGATTTGAATTAGATAATTCTATTTGTTGCCAAGTATTACG-TTATCCAAAATGGAAGAATCATATATTT-GTTGGATTGATATTTACAGATGCACCAGATTATCATCCAGTGCTAATGCATATTTAACTAATAGCTTTACAGGAAAACAAAAAAAATAAATTACCTCTGTTACTCTTCTTTTTAAATTGTTTTAATCTTTAAGAACAAGTGTACTTTCATTCTACTATTGTAACATTGTAGAATACATTATATAAAAGATTTACTGATGTGATAAATGAATCAAAT]
[+] EMBL CD078751 [TGGACGCTCACAATGTTACTGTCAAGGCCGATTAATATTAAATTCAAAGGGTTCGCCTGTTTATTAAGGCAGTTTCGCTCATCATTTAATTCGCATTCTGATTTGGAGGATGGGAAGTTGGTCAACGTTGTCGTTGTTTCCAACTCGAATTCTACCCAAAAATGGCCGAATACTAAGCTCGGACCAATAGATACTATCAATCCTAAATATCCATTGCCTGGGTTTGTAGGGATTCCGTTAGAGAATGATGAGAAACCTTTTGAAAAGAAATACACACCTGCGGTGCATACATTACCTCCAATAAAAGAGGAGAGCTATGCTGCAGCTCTTTTGAATGTTTACAATGAAAAAGAGTTCAGTGAATCTCGGCCTTCAATAATTCCACCGATATCAGATCAA TTTGAATGTA CCATACACAC TTGTCCAGT GCTAGTTCAGCAAGC TTTAGCTAATGTA TTTCCATCGAGAAAACTTTCATTCAAACCTTTAACAGCATTAATTCTTAGTCGTCACACTAATGATGAATCGTTAGATGGATGGAGTGAGGAAGAAGCTGCAGATGAACATGAACCATTAGCACGATCTTTTATTACTTCAGC ANTAGAAATAT ]
[+] EMBL SMT14394 [ GTTACTGTCAAGGCCGATTAATAGTAAATTCAAAGGGTTCGCCTGTTTATTAAGGCAGTTTCGCTCATCATTTAATTCGCATTCTGATTTGGAGGATGGGAAGTTGGTCAACGTTGTCGTTGTTTCCAACTCGAATTCTACCCAAAAATGGCCGAATACTAAGCTCGGACCAATAGATACTATCAATCCTAAATATCCATTGCCTGGGTTTGTAGGGATTCCGTTAGAGAATGATGAGAAACCTTTTGAAAAGAAATACACACCTGCGG GCATACATTACCTCCAATAAAAGAGGAGAGCTATGCTGCAGCTCTTTTGAATGTTTACANTGAAAAAGAGTTCAGTGAATCTCGGNCTTCAATAATTCCACCGATATCAGATCAATTTTGAATGNACCCATACACACTTTGTCCAGTGGTTAGTTCAGCAAGCTTTTAGTAAATGTANTTTC ]
[+] EMBL CD082911 [ gagGCTCTTTTGAATGTTTACAATGAAAAAGAGTTCAGTGAATCTCGGCCTTCAATAATTCCACCGATATCAGATCAA TTTGAATGTA CCATACACAC TTGTCCAGT GCTAGTTCAGCAAGC TTTAGCTAATGTA TTTCCATCGAGAAAACTTTCATTCAAACCTTTAACAGCATTAATTCTTAGTCGTCACACTAATGATGAATCGTTAGATGGATGGAGTGAGGAAGAAGCTGCAGATGAACATGAACAATTAGCACGATCTTTTATTACTTCAGC AATAGAAATATGCTCATCATTAAAAGAATTAGGCTATTGGGCAGATTTTATTGATCCGTTCACTGGGAAACCGTATATTGGAGCCCATGGCGAAGCTATACTCAAAGAAACCGATGAAACAATGAAACATTTTGGATTTGAATTAGATAATTCTATTTGTTGCCAAGTATTACG TTATCCAAAATGGAAGAATCATATATTT GTTGGATTGATATTTACAGATGCACCAGATTATCATCCAGTGCTAATGCATATTTAACTAATAGCTNTACAGGAAAACAAAAAAAATAAATTACCTCTGTTACTCTTCTTTNTAAATTGTTTTAATCTTTAAGAAACAGTGTACTTTCATTCTACTATTGTAACATTGTAGAATACATTATATANAAGAT ]
[-] EMBL CD073211 [ T GNTAGTTCAGCAAGC TTTAGNTAATGTA TTTCCATCGAGAAAACTTTCATTCAAACCTTTAACAGCATTAATTCTTAGTCGTCACACTAATGATGAATCGTTAGATGGATGGAGTGAGGAAGAAGCTGCAGATGAACATGAACAATTAGCACGATCTTTTATTACTTCAGC AATAGAAATATGCTCATCATTAAAAGAATTAGGCTATTGGGCAGATTTTATTGATCCGTTCACTGGGAAACCGTATATTGGAGCCCATGGCGAAGCTATACTCAAAGAAACCGATGAAACAATGAAACATTTTGGATTTGAATTAGATAATTCTATTTGTTGCCAAGTATTACG TTATCCAAAATGGAAGAATCATATATTT GTTGGATTGATATTTACAGATGCACCAGATTATCATCCAGTGCTAATGCATATTTAACTAATAGCTTTACAGGAAAACAAAAAAAATAAATTACCTCTGTTACTCTTCTTTTTAAATTGTTTTAATCTTTAAGAACAAGTGTACTTTCATTCTACTATTGTAACATTGTAGAATACATTATATAAAAGATTTACTGATGTGATAAATGAAT ]
[-] EMBL CD076495 [ TAGTTCAGCAAGC TTTAGCTAATGTA TTTCCATCGAGAAAACTTTCATTCAAACCTTTAACAGCATTAATTCTTAGTCGTCACACTAATGATGAATCGTTAGATGGATGGAGTGAGGAAGAAGCTGCAGATGAACATGAACAATTAGCCCGATCTTTTATTACTTCAGC AATAGAAATATGCTCATCATTAAAAGAATTAGGCTATTGGGCAGATTTTATTGATCCGTTCACTGGGAAACCGTATATTGGAGCCCATGGCGAAGCTATACTCAAAGAAACCGATGAAACAATGAAACATTTTGGATTTGAATTAGATAATTCTATTTGTTGCCAAGTATTACG TTATCCAAAATGGAAGAATCATATATTT GTTGGATTGATATTTACAGATGCCCCAGATTATCATCCAGTGCTAATGCATATTTAACTAATAGCTTTACAGGAAAACAAAAAAAATAAATTACCTCTGTTACTCTTCTTTTTAAATTGTTTTAATCTTTAAGAACAAGTGTACTTTCATTCTACTATTGTAACATTGTAGAATACATTATAT ]
[+] EMBL SMAA25566 [ tacgTAATGTA TTTCCATCGAGAAGACTTTCATTCAAACCTTTAACAGCATTAATTCTAAGTCATCACACTAGTGATGAATCGTTAGATGGATGGAGTGAGGAAGAAGCTGCAGATGAACATGAACAATTAGCACGATCTTTTATTACTTCAGC AATAGAAATATGCTCATCATTAAAAGAATTAGGCTATTGGGCAGATTTTATTGATCCGTTCACTGGGAAACCGTATATTGGAGCACATGGTGAAGCTATACTCAAAGAAACTGATGAAACAATG AACATTTTGGATTTGAATTAGACAATTCTATTTGTTGCCAAGTATTACGTTTATCCAAATTGG AGAATCATCTATTTGGTTGGATTGATATTTACAGATGCACCAGATTTTCCTCCAGTGCTAATGCATATTTAACTAATAGCTTT CAGG AAACAAAAAAATTAAt ]
[-] EMBL SMT14393 [ CTTCAGCAAATAGAAATATGCTCATCATTAAAAGAATTAGGCTATTGGGCNGATTTTANTGAACCGTTCACTGGGANNCCGTATATTGGAGCCCATGGCGAAGCTATACTCAAAGAAACCGNTGAAACAATGAAACATTTTGGATTTGAATTAGATAANTCTATTTGTTGCCAAGTATTACG TTANCCAAAATGGGAGAATCATATATTT GTTGGATTGATATTTACAGATGCACCAGATTATCATCCAGTGCTAATGCATATTTAACTAATAGCTTTACAGGAAAACAAANAAAATAAATTACCTCTGTTACTCTTCTTTTTAAATTGTTTTAATCTTTAAGNACAAGTGTACTTTCATTCTACTATTGTAACATTGTAGAATACATT ]
[-] EMBL AI975387 [ TTATTGATCCGTTCACTGGGAAACGGTATATTGGAGGCCATGGCGAAGCTATACTCAAAGAAACGGATGAAACAATGAAACATTTTGGATTTGAATTAGAAGATTCTATTTGTTGCCAAGTATTACG TTATCCAAAATGGAAGAATCATAGATGT GTTGGATTGATATTTACAGATGCACCAGATTATCATCCAGTGCTAATGCATATTTAACTAATAGCTTTTCAGGAAAACAAAAAAAATAAATTACCTCTGTTACTCTTCTTTTTAAATTGTTTTAATCTTTAAGAACAAGTGTAGTTTCATTATAGTATTGTAACATTGTAGAATACATTATATAAAAGATTTACTGATGTGATAAATGAATCAAAT]
[-] EMBL CD135354 [ ATTCTATTTGTTGCCAAGTATTACG TTATCCAAAATGGAAGAATCATATATTT GTTGGATTGATATTTACAGATGCACCAGATTATCATCCAGTGCTAATGCATATTTAACTAATAGCTTTACAGGAAAACAAAAAAAATAAATTACCTCTGTTACTCTTCTTTTTAAATTGTTTTAATCTTTAAGAACAAGTGTACTTTCATTCTACTATTGTAACATT ]
consensusID : consensus_9680#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 275 fasta sequence
[AAATTCTATTTATTCCTGGAAGAATGCACAGAATGTAGCTGTAGAGTAGGGACTCATGTTAGAGAATGATGAGAAACCTTTTGAAAAGAAATACACACCTGCGGTGCATACATTACCTCCAATAAAAGAGGAGAGCTATGCTGCAGCTCTTTTGAATGTTTACCATGAAAACAGAGTTCAGTGCATCTCGGCCTTCAATAATTCCACCGATATCAGATCAATTTGAATGTACCATACACACTTGTCCAGTGCTAGTTCAGCAAGCTTTAGCTAAT]
[+] EMBL CD111702 [AAATTCTATTTATTCCTGGAAGAATGCACAGAATGTAGCTGTAGAGTAGGGACTCATGTTAGAGAATGATGAGAAACCTTTTGAAAAGAAATACACACCTGCGGTGCATACATTACCTCCAATAAAAGAGGAGAGCTATGCTGCAGCTCTTTTGAATGTTTACCATGAAAACAGAGTTCAGTGCATCTCGGCCTTCAATAATTCCACCGATATCAGATCAATTTGAATGTACCATACACACTTGTCCAGTGCTAGTTCAGCAAGCTTTAGCTAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9680#0 TGGACGCTCACAATGTTACTGTCAAGGCCGATTAATATTAAATTCAAAGGGTTCGCCTGT 60
consensus_9680#1 ------------------------------------------------------------
consensus_9680#0 TTATTAAGGCAGTTTCGCTCATCATTTAATTCGCATTCTGATTTGGAGGATGGGAAGTTG 120
consensus_9680#1 ------------------------------------------------------------
consensus_9680#0 GTCAACGTTGTCGTTGTTTCCAACTCGAATTCTACCCAAAAATGGCCGAATACTAAGCTC 180
consensus_9680#1 ------------------------------------------------------------
consensus_9680#0 GGACCAATAGATACTATCAATCCT---AAATATCCATTGCCTGGGTTTGTAG-----GGA 232
consensus_9680#1 --------AAATTCTATTTATTCCTGGAAGAATGCACAGAATGTAGCTGTAGAGTAGGGA 52
* ** **** ** * ** ** ** * ** ***** ***
consensus_9680#0 TTC-CGTTAGAGAATGATGAGAAACCTTTTGAAAAGAAATACACACCTGCGGTGCATACA 291
consensus_9680#1 CTCATGTTAGAGAATGATGAGAAACCTTTTGAAAAGAAATACACACCTGCGGTGCATACA 112
** *******************************************************
consensus_9680#0 TTACCTCCAATAAAAGAGGAGAGCTATGCTGCAGCTCTTTTGAATGTTTACAATGAAAA- 350
consensus_9680#1 TTACCTCCAATAAAAGAGGAGAGCTATGCTGCAGCTCTTTTGAATGTTTACCATGAAAAC 172
*************************************************** *******
consensus_9680#0 AGAGTTCAGTGAATCTCGGCCTTCAATAATTCCACCGATATCAGATCAATTTGAATGTAC 410
consensus_9680#1 AGAGTTCAGTGCATCTCGGCCTTCAATAATTCCACCGATATCAGATCAATTTGAATGTAC 232
*********** ************************************************
consensus_9680#0 CATACACACTTGTCCAGTGCTAGTTCAGCAAGCTTTAGCTAATGTATTTCCATCGAGAAA 470
consensus_9680#1 CATACACACTTGTCCAGTGCTAGTTCAGCAAGCTTTAGCTAAT----------------- 275
*******************************************
consensus_9680#0 ACTTTCATTCAAACCTTTAACAGCATTAATTCTTAGTCGTCACACTAATGATGAATCGTT 530
consensus_9680#1 ------------------------------------------------------------
consensus_9680#0 AGATGGATGGAGTGAGGAAGAAGCTGCAGATGAACATGAACAATTAGCACGATCTTTTAT 590
consensus_9680#1 ------------------------------------------------------------
consensus_9680#0 TACTTCAGCAATAGAAATATGCTCATCATTAAAAGAATTAGGCTATTGGGCAGATTTTAT 650
consensus_9680#1 ------------------------------------------------------------
consensus_9680#0 TGATCCGTTCACTGGGAAACCGTATATTGGAGCCCATGGCGAAGCTATACTCAAAGAAAC 710
consensus_9680#1 ------------------------------------------------------------
consensus_9680#0 CGATGAAACAATGAAACATTTTGGATTTGAATTAGATAATTCTATTTGTTGCCAAGTATT 770
consensus_9680#1 ------------------------------------------------------------
consensus_9680#0 ACGTTATCCAAAATGGAAGAATCATATATTTGTTGGATTGATATTTACAGATGCACCAGA 830
consensus_9680#1 ------------------------------------------------------------
consensus_9680#0 TTATCATCCAGTGCTAATGCATATTTAACTAATAGCTTTACAGGAAAACAAAAAAAATAA 890
consensus_9680#1 ------------------------------------------------------------
consensus_9680#0 ATTACCTCTGTTACTCTTCTTTTTAAATTGTTTTAATCTTTAAGAACAAGTGTACTTTCA 950
consensus_9680#1 ------------------------------------------------------------
consensus_9680#0 TTCTACTATTGTAACATTGTAGAATACATTATATAAAAGATTTACTGATGTGATAAATGA 1010
consensus_9680#1 ------------------------------------------------------------
consensus_9680#0 ATCAAAT 1017
consensus_9680#1 -------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||