These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9680#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1017 fasta sequence [TGGACGCTCACAATGTTACTGTCAAGGCCGATTAATATTAAATTCAAAGGGTTCGCCTGTTTATTAAGGCAGTTTCGCTCATCATTTAATTCGCATTCTGATTTGGAGGATGGGAAGTTGGTCAACGTTGTCGTTGTTTCCAACTCGAATTCTACCCAAAAATGGCCGAATACTAAGCTCGGACCAATAGATACTATCAATCCTAAATATCCATTGCCTGGGTTTGTAGGGATTCCGTTAGAGAATGATGAGAAACCTTTTGAAAAGAAATACACACCTGCGGTGCATACATTACCTCCAATAAAAGAGGAGAGCTATGCTGCAGCTCTTTTGAATGTTTACAATGAAAAAGAGTTCAGTGAATCTCGGCCTTCAATAATTCCACCGATATCAGATCAA-TTTGAATGTA-CCATACACAC-TTGTCCAGT-GCTAGTTCAGCAAGC-TTTAGCTAATGTA-TTTCCATCGAGAAAACTTTCATTCAAACCTTTAACAGCATTAATTCTTAGTCGTCACACTAATGATGAATCGTTAGATGGATGGAGTGAGGAAGAAGCTGCAGATGAACATGAACAATTAGCACGATCTTTTATTACTTCAGC-AATAGAAATATGCTCATCATTAAAAGAATTAGGCTATTGGGCAGATTTTATTGATCCGTTCACTGGGAAACCGTATATTGGAGCCCATGGCGAAGCTATACTCAAAGAAACCGATGAAACAATGAAACATTTTGGATTTGAATTAGATAATTCTATTTGTTGCCAAGTATTACG-TTATCCAAAATGGAAGAATCATATATTT-GTTGGATTGATATTTACAGATGCACCAGATTATCATCCAGTGCTAATGCATATTTAACTAATAGCTTTACAGGAAAACAAAAAAAATAAATTACCTCTGTTACTCTTCTTTTTAAATTGTTTTAATCTTTAAGAACAAGTGTACTTTCATTCTACTATTGTAACATTGTAGAATACATTATATAAAAGATTTACTGATGTGATAAATGAATCAAAT] [+] EMBL CD078751 [TGGACGCTCACAATGTTACTGTCAAGGCCGATTAATATTAAATTCAAAGGGTTCGCCTGTTTATTAAGGCAGTTTCGCTCATCATTTAATTCGCATTCTGATTTGGAGGATGGGAAGTTGGTCAACGTTGTCGTTGTTTCCAACTCGAATTCTACCCAAAAATGGCCGAATACTAAGCTCGGACCAATAGATACTATCAATCCTAAATATCCATTGCCTGGGTTTGTAGGGATTCCGTTAGAGAATGATGAGAAACCTTTTGAAAAGAAATACACACCTGCGGTGCATACATTACCTCCAATAAAAGAGGAGAGCTATGCTGCAGCTCTTTTGAATGTTTACAATGAAAAAGAGTTCAGTGAATCTCGGCCTTCAATAATTCCACCGATATCAGATCAA TTTGAATGTA CCATACACAC TTGTCCAGT GCTAGTTCAGCAAGC TTTAGCTAATGTA TTTCCATCGAGAAAACTTTCATTCAAACCTTTAACAGCATTAATTCTTAGTCGTCACACTAATGATGAATCGTTAGATGGATGGAGTGAGGAAGAAGCTGCAGATGAACATGAACCATTAGCACGATCTTTTATTACTTCAGC ANTAGAAATAT ] [+] EMBL SMT14394 [ GTTACTGTCAAGGCCGATTAATAGTAAATTCAAAGGGTTCGCCTGTTTATTAAGGCAGTTTCGCTCATCATTTAATTCGCATTCTGATTTGGAGGATGGGAAGTTGGTCAACGTTGTCGTTGTTTCCAACTCGAATTCTACCCAAAAATGGCCGAATACTAAGCTCGGACCAATAGATACTATCAATCCTAAATATCCATTGCCTGGGTTTGTAGGGATTCCGTTAGAGAATGATGAGAAACCTTTTGAAAAGAAATACACACCTGCGG GCATACATTACCTCCAATAAAAGAGGAGAGCTATGCTGCAGCTCTTTTGAATGTTTACANTGAAAAAGAGTTCAGTGAATCTCGGNCTTCAATAATTCCACCGATATCAGATCAATTTTGAATGNACCCATACACACTTTGTCCAGTGGTTAGTTCAGCAAGCTTTTAGTAAATGTANTTTC ] [+] EMBL CD082911 [ gagGCTCTTTTGAATGTTTACAATGAAAAAGAGTTCAGTGAATCTCGGCCTTCAATAATTCCACCGATATCAGATCAA TTTGAATGTA CCATACACAC TTGTCCAGT GCTAGTTCAGCAAGC TTTAGCTAATGTA TTTCCATCGAGAAAACTTTCATTCAAACCTTTAACAGCATTAATTCTTAGTCGTCACACTAATGATGAATCGTTAGATGGATGGAGTGAGGAAGAAGCTGCAGATGAACATGAACAATTAGCACGATCTTTTATTACTTCAGC AATAGAAATATGCTCATCATTAAAAGAATTAGGCTATTGGGCAGATTTTATTGATCCGTTCACTGGGAAACCGTATATTGGAGCCCATGGCGAAGCTATACTCAAAGAAACCGATGAAACAATGAAACATTTTGGATTTGAATTAGATAATTCTATTTGTTGCCAAGTATTACG TTATCCAAAATGGAAGAATCATATATTT GTTGGATTGATATTTACAGATGCACCAGATTATCATCCAGTGCTAATGCATATTTAACTAATAGCTNTACAGGAAAACAAAAAAAATAAATTACCTCTGTTACTCTTCTTTNTAAATTGTTTTAATCTTTAAGAAACAGTGTACTTTCATTCTACTATTGTAACATTGTAGAATACATTATATANAAGAT ] [-] EMBL CD073211 [ T GNTAGTTCAGCAAGC TTTAGNTAATGTA TTTCCATCGAGAAAACTTTCATTCAAACCTTTAACAGCATTAATTCTTAGTCGTCACACTAATGATGAATCGTTAGATGGATGGAGTGAGGAAGAAGCTGCAGATGAACATGAACAATTAGCACGATCTTTTATTACTTCAGC AATAGAAATATGCTCATCATTAAAAGAATTAGGCTATTGGGCAGATTTTATTGATCCGTTCACTGGGAAACCGTATATTGGAGCCCATGGCGAAGCTATACTCAAAGAAACCGATGAAACAATGAAACATTTTGGATTTGAATTAGATAATTCTATTTGTTGCCAAGTATTACG TTATCCAAAATGGAAGAATCATATATTT GTTGGATTGATATTTACAGATGCACCAGATTATCATCCAGTGCTAATGCATATTTAACTAATAGCTTTACAGGAAAACAAAAAAAATAAATTACCTCTGTTACTCTTCTTTTTAAATTGTTTTAATCTTTAAGAACAAGTGTACTTTCATTCTACTATTGTAACATTGTAGAATACATTATATAAAAGATTTACTGATGTGATAAATGAAT ] [-] EMBL CD076495 [ TAGTTCAGCAAGC TTTAGCTAATGTA TTTCCATCGAGAAAACTTTCATTCAAACCTTTAACAGCATTAATTCTTAGTCGTCACACTAATGATGAATCGTTAGATGGATGGAGTGAGGAAGAAGCTGCAGATGAACATGAACAATTAGCCCGATCTTTTATTACTTCAGC AATAGAAATATGCTCATCATTAAAAGAATTAGGCTATTGGGCAGATTTTATTGATCCGTTCACTGGGAAACCGTATATTGGAGCCCATGGCGAAGCTATACTCAAAGAAACCGATGAAACAATGAAACATTTTGGATTTGAATTAGATAATTCTATTTGTTGCCAAGTATTACG TTATCCAAAATGGAAGAATCATATATTT GTTGGATTGATATTTACAGATGCCCCAGATTATCATCCAGTGCTAATGCATATTTAACTAATAGCTTTACAGGAAAACAAAAAAAATAAATTACCTCTGTTACTCTTCTTTTTAAATTGTTTTAATCTTTAAGAACAAGTGTACTTTCATTCTACTATTGTAACATTGTAGAATACATTATAT ] [+] EMBL SMAA25566 [ tacgTAATGTA TTTCCATCGAGAAGACTTTCATTCAAACCTTTAACAGCATTAATTCTAAGTCATCACACTAGTGATGAATCGTTAGATGGATGGAGTGAGGAAGAAGCTGCAGATGAACATGAACAATTAGCACGATCTTTTATTACTTCAGC AATAGAAATATGCTCATCATTAAAAGAATTAGGCTATTGGGCAGATTTTATTGATCCGTTCACTGGGAAACCGTATATTGGAGCACATGGTGAAGCTATACTCAAAGAAACTGATGAAACAATG AACATTTTGGATTTGAATTAGACAATTCTATTTGTTGCCAAGTATTACGTTTATCCAAATTGG AGAATCATCTATTTGGTTGGATTGATATTTACAGATGCACCAGATTTTCCTCCAGTGCTAATGCATATTTAACTAATAGCTTT CAGG AAACAAAAAAATTAAt ] [-] EMBL SMT14393 [ CTTCAGCAAATAGAAATATGCTCATCATTAAAAGAATTAGGCTATTGGGCNGATTTTANTGAACCGTTCACTGGGANNCCGTATATTGGAGCCCATGGCGAAGCTATACTCAAAGAAACCGNTGAAACAATGAAACATTTTGGATTTGAATTAGATAANTCTATTTGTTGCCAAGTATTACG TTANCCAAAATGGGAGAATCATATATTT GTTGGATTGATATTTACAGATGCACCAGATTATCATCCAGTGCTAATGCATATTTAACTAATAGCTTTACAGGAAAACAAANAAAATAAATTACCTCTGTTACTCTTCTTTTTAAATTGTTTTAATCTTTAAGNACAAGTGTACTTTCATTCTACTATTGTAACATTGTAGAATACATT ] [-] EMBL AI975387 [ TTATTGATCCGTTCACTGGGAAACGGTATATTGGAGGCCATGGCGAAGCTATACTCAAAGAAACGGATGAAACAATGAAACATTTTGGATTTGAATTAGAAGATTCTATTTGTTGCCAAGTATTACG TTATCCAAAATGGAAGAATCATAGATGT GTTGGATTGATATTTACAGATGCACCAGATTATCATCCAGTGCTAATGCATATTTAACTAATAGCTTTTCAGGAAAACAAAAAAAATAAATTACCTCTGTTACTCTTCTTTTTAAATTGTTTTAATCTTTAAGAACAAGTGTAGTTTCATTATAGTATTGTAACATTGTAGAATACATTATATAAAAGATTTACTGATGTGATAAATGAATCAAAT] [-] EMBL CD135354 [ ATTCTATTTGTTGCCAAGTATTACG TTATCCAAAATGGAAGAATCATATATTT GTTGGATTGATATTTACAGATGCACCAGATTATCATCCAGTGCTAATGCATATTTAACTAATAGCTTTACAGGAAAACAAAAAAAATAAATTACCTCTGTTACTCTTCTTTTTAAATTGTTTTAATCTTTAAGAACAAGTGTACTTTCATTCTACTATTGTAACATT ] consensusID : consensus_9680#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 275 fasta sequence [AAATTCTATTTATTCCTGGAAGAATGCACAGAATGTAGCTGTAGAGTAGGGACTCATGTTAGAGAATGATGAGAAACCTTTTGAAAAGAAATACACACCTGCGGTGCATACATTACCTCCAATAAAAGAGGAGAGCTATGCTGCAGCTCTTTTGAATGTTTACCATGAAAACAGAGTTCAGTGCATCTCGGCCTTCAATAATTCCACCGATATCAGATCAATTTGAATGTACCATACACACTTGTCCAGTGCTAGTTCAGCAAGCTTTAGCTAAT] [+] EMBL CD111702 [AAATTCTATTTATTCCTGGAAGAATGCACAGAATGTAGCTGTAGAGTAGGGACTCATGTTAGAGAATGATGAGAAACCTTTTGAAAAGAAATACACACCTGCGGTGCATACATTACCTCCAATAAAAGAGGAGAGCTATGCTGCAGCTCTTTTGAATGTTTACCATGAAAACAGAGTTCAGTGCATCTCGGCCTTCAATAATTCCACCGATATCAGATCAATTTGAATGTACCATACACACTTGTCCAGTGCTAGTTCAGCAAGCTTTAGCTAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9680#0 TGGACGCTCACAATGTTACTGTCAAGGCCGATTAATATTAAATTCAAAGGGTTCGCCTGT 60 consensus_9680#1 ------------------------------------------------------------ consensus_9680#0 TTATTAAGGCAGTTTCGCTCATCATTTAATTCGCATTCTGATTTGGAGGATGGGAAGTTG 120 consensus_9680#1 ------------------------------------------------------------ consensus_9680#0 GTCAACGTTGTCGTTGTTTCCAACTCGAATTCTACCCAAAAATGGCCGAATACTAAGCTC 180 consensus_9680#1 ------------------------------------------------------------ consensus_9680#0 GGACCAATAGATACTATCAATCCT---AAATATCCATTGCCTGGGTTTGTAG-----GGA 232 consensus_9680#1 --------AAATTCTATTTATTCCTGGAAGAATGCACAGAATGTAGCTGTAGAGTAGGGA 52 * ** **** ** * ** ** ** * ** ***** *** consensus_9680#0 TTC-CGTTAGAGAATGATGAGAAACCTTTTGAAAAGAAATACACACCTGCGGTGCATACA 291 consensus_9680#1 CTCATGTTAGAGAATGATGAGAAACCTTTTGAAAAGAAATACACACCTGCGGTGCATACA 112 ** ******************************************************* consensus_9680#0 TTACCTCCAATAAAAGAGGAGAGCTATGCTGCAGCTCTTTTGAATGTTTACAATGAAAA- 350 consensus_9680#1 TTACCTCCAATAAAAGAGGAGAGCTATGCTGCAGCTCTTTTGAATGTTTACCATGAAAAC 172 *************************************************** ******* consensus_9680#0 AGAGTTCAGTGAATCTCGGCCTTCAATAATTCCACCGATATCAGATCAATTTGAATGTAC 410 consensus_9680#1 AGAGTTCAGTGCATCTCGGCCTTCAATAATTCCACCGATATCAGATCAATTTGAATGTAC 232 *********** ************************************************ consensus_9680#0 CATACACACTTGTCCAGTGCTAGTTCAGCAAGCTTTAGCTAATGTATTTCCATCGAGAAA 470 consensus_9680#1 CATACACACTTGTCCAGTGCTAGTTCAGCAAGCTTTAGCTAAT----------------- 275 ******************************************* consensus_9680#0 ACTTTCATTCAAACCTTTAACAGCATTAATTCTTAGTCGTCACACTAATGATGAATCGTT 530 consensus_9680#1 ------------------------------------------------------------ consensus_9680#0 AGATGGATGGAGTGAGGAAGAAGCTGCAGATGAACATGAACAATTAGCACGATCTTTTAT 590 consensus_9680#1 ------------------------------------------------------------ consensus_9680#0 TACTTCAGCAATAGAAATATGCTCATCATTAAAAGAATTAGGCTATTGGGCAGATTTTAT 650 consensus_9680#1 ------------------------------------------------------------ consensus_9680#0 TGATCCGTTCACTGGGAAACCGTATATTGGAGCCCATGGCGAAGCTATACTCAAAGAAAC 710 consensus_9680#1 ------------------------------------------------------------ consensus_9680#0 CGATGAAACAATGAAACATTTTGGATTTGAATTAGATAATTCTATTTGTTGCCAAGTATT 770 consensus_9680#1 ------------------------------------------------------------ consensus_9680#0 ACGTTATCCAAAATGGAAGAATCATATATTTGTTGGATTGATATTTACAGATGCACCAGA 830 consensus_9680#1 ------------------------------------------------------------ consensus_9680#0 TTATCATCCAGTGCTAATGCATATTTAACTAATAGCTTTACAGGAAAACAAAAAAAATAA 890 consensus_9680#1 ------------------------------------------------------------ consensus_9680#0 ATTACCTCTGTTACTCTTCTTTTTAAATTGTTTTAATCTTTAAGAACAAGTGTACTTTCA 950 consensus_9680#1 ------------------------------------------------------------ consensus_9680#0 TTCTACTATTGTAACATTGTAGAATACATTATATAAAAGATTTACTGATGTGATAAATGA 1010 consensus_9680#1 ------------------------------------------------------------ consensus_9680#0 ATCAAAT 1017 consensus_9680#1 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||