cluster # 9684

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Schistosoma mansoni
cluster # 9684 cluster # 9684 Sequences # 11 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9684#0 length = 818 sequences # 3

consensus_9684#1 length = 474 sequences # 2
consensus_9684#2 length = 268 sequences # 6

consensusID : consensus_9684#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 818
fasta sequence

                              [TTCCGAAACCAGAGTTGATATAAGCAAACTACGAGTTGAATTAGCATCTAAATATACAACAAGTCTATCTTCTTCCTCAATGATCCTTTTGTCCACATGTAGCAAATATTCAGGAACGCTGAGTTGTCTAGATAAAGTATCTGCTTCATAAGCGTAGAGCTGTTGACTTTTACAAAGAAATTCCGCAAGAAATATTGAATCATAGAGTTTTAAATCCACCAGCATTCTGATGACAGTACGTAAAAGTTGCCGATCAATAGCTTCTCCACATCGTTCTTTATGTATTTCATCCAGTATTTGGCACATCAAACGGGACTGAACTTTCTCCTGAGTAAT-ACATCTTCTCGGAACAACTTAAGAGCTAGATCCCATATTTGTAAGTTCTGTGGATTTAGCTGAAGAAGTTGTCTATCCATAAAAAGAAATATATTCCTGATGAGAAGCATTTTTTTACAGTATAATCCCCAACACTGTGCCACTGCGCTGAGTTGGAAACCTACTTTTAAAAACTGAGGTTGTAGTCCAGCTACATATTCACTGAATATAACCTTCAGGCTTGAGTACAATTCCATAATCATTTTTTGTGCACATATATCCTCGACATTCCTGTATAGCTCCTCAAGCGTGGATTCGACAGGCTCACTGAGAAAAACTGCCTTTGTCGCTTCTTGAAGCTTCAAGCATGAGTCTTGGAATATTTGTGAAGCCGAAGGAAGTCCTTTAACATCAGAAATCGCCTTTAAAGAAATGCGTTTCGCTGTGGGGCCACAGTGATCAACTGCATGTGACAGTGTTTTTCGGAACCCATTGACTGATGC]

[+] EMBL CD190760             [TTCCGAAACCAGAGTTGATATAAGCAAACTACGAGTTGAATTAGCATCTAAATATACAACAAGTCTATCTTCTTCCTCAATGATCCTTTTGTCCACATGTAGCAAATATTCAGGAACGCTGAGTTGTCTAGATAAAGTATCTGCTTCATAAGCGTAGAGCTGTTGACTTTTACAAAGAAATTCCGCAAGAAATATTGAATCATAGAGTTTTAAATCCACCAGCATTCTGATGACAGTACGTAAAAGTTGCCGATCAATAGCTTCTCCACATCGTTCTTTATGTATTTCATCCAGTATTTGGCACATCAAACGGGACTGAACTTTCTCCTGAGTAAT ACATCTTCTCGG ACAACTTAga                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD197414             [                                             ATCTTAATATACAACAAGTCTATCTTCTTCCTCAATGATCCCTTGGTCCACATGTAGCAAATATTCAGGAACGCTGAGTGGTCTAGATAAAGTATCTGCTTCATAAGCGTAGAGTTGTTGACTTTTACAAAGAAATTCCGCAAGAAATATTGAATCATAGAGTTTTAAATCCACCAGCATTCTGATGACAGTACGTAAAAGTTGCCGATCAATAGCTTCTCCACATCGTTCTTTATGTATTTCATCCAGTATTTGGCACATCAAACGGGACTGAACTTTCTCCTGAGTAATAACATCTTCTCGGAACAACTTAAGAGCTAGATCCCATATTTGTAAGTTCTGTGGATTTAGCTGAAGAAGTTGTCTATCCATAAAAAGAAATATATTCCTGATGAGAAGCATTT                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD184764             [                                                                                                                                                                                                                                                                                                                                                     CTTCTCGGAACAACTTAAGAGCTAGATCCCATATTTGTAAGTTCTGTGGATTTAGCTGAAGAAGTTGTCTATCCATAAAAAGAAATATATTCCTGATGAGAAGCATTTTTTTACAGTATAATCCCCAACACTGTGCCACTGCGCTGAGTTGGAAACCTACTTTTAAAAACTGAGGTTGTAGTCCAGCTACATATTCACTGAATATAACCTTCAGGCTTGAGTACAATTCCATAATCATTTTTTGTGCACATATATCCTCGACATTCCTGTATAGCTCCTCAAGCGTGGATTCGACAGGCTCACTGAGAAAAACTGCCTTTGTCGCTTCTTGAAGCTTCAAGCATGAGTCTTGGAATATTTGTGAAGCCGAAGGAAGTCCTTTAACATCAGAAATCGCCTTTAAAGAAATGCGTTTCGCTGTGGGGCCACAGTGATCAACTGCATGTGACAGTGTTTTTCGGAACCCATTGACTGATGC]




>consensus_9684#0
TTCCGAAACCAGAGTTGATATAAGCAAACTACGAGTTGAATTAGCATCTAAATATACAAC
AAGTCTATCTTCTTCCTCAATGATCCTTTTGTCCACATGTAGCAAATATTCAGGAACGCT
GAGTTGTCTAGATAAAGTATCTGCTTCATAAGCGTAGAGCTGTTGACTTTTACAAAGAAA
TTCCGCAAGAAATATTGAATCATAGAGTTTTAAATCCACCAGCATTCTGATGACAGTACG
TAAAAGTTGCCGATCAATAGCTTCTCCACATCGTTCTTTATGTATTTCATCCAGTATTTG
GCACATCAAACGGGACTGAACTTTCTCCTGAGTAATACATCTTCTCGGAACAACTTAAGA
GCTAGATCCCATATTTGTAAGTTCTGTGGATTTAGCTGAAGAAGTTGTCTATCCATAAAA
AGAAATATATTCCTGATGAGAAGCATTTTTTTACAGTATAATCCCCAACACTGTGCCACT
GCGCTGAGTTGGAAACCTACTTTTAAAAACTGAGGTTGTAGTCCAGCTACATATTCACTG
AATATAACCTTCAGGCTTGAGTACAATTCCATAATCATTTTTTGTGCACATATATCCTCG
ACATTCCTGTATAGCTCCTCAAGCGTGGATTCGACAGGCTCACTGAGAAAAACTGCCTTT
GTCGCTTCTTGAAGCTTCAAGCATGAGTCTTGGAATATTTGTGAAGCCGAAGGAAGTCCT
TTAACATCAGAAATCGCCTTTAAAGAAATGCGTTTCGCTGTGGGGCCACAGTGATCAACT
GCATGTGACAGTGTTTTTCGGAACCCATTGACTGATGC

consensusID : consensus_9684#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 474
fasta sequence

                              [CAACACTGTGCCACTGCGCTGAGTTGGAAACCTACTGTGAAATTGAAACGTCAAGGTAAATAGACAAAAGAAGGGAAATGACAAAAACACATCAGCAAGAAAAGGATATTTTAAAAACTGAGGTTGTAGTCCAGCTACATATTCACTGAATATAACCTTCAGGCTTGAGTACAATTCCATAATCATTTTTTGTGCACATATATCCTCGACATTCCTGTATAGCTCCTCAAGCGTGGATTCGACAGGCTCACTGAGAAAAACTGCCTTTGTCGCTTTTTGAAGCTTCAAGCATGAGTCTTGGAATATTTGTGAAGCCGAAGGAAGTCCTTTAACATCAGAAATCGCCTTTAAAGAAATGCGTTTCGCTGTGGGGCCACAGTGATCAACTGCATGTGACAGTGTTTTTCGGAACCCATTGACTGATGCCTTACACTCCATAACTAACTAGTTCATGAAGACATTACGAAACTGTAG]

[-] EMBL CD184697             [CAACACTGTGCCACTGCGCTGAGTTGGAAACCTACTGTGAAATTGAAACGTCAAGGTAAATAGACAAAAGAAGGGAAATGACAAAAACACATCAGCAAGAAAAGGATATTTTAAAAACTGAGGTTGTAGTCCAGCTACATATTCACTGAATATAACCTTCAGGCTTGAGTACAATTCCATAATCATTTTTTGTGCACATATATCCTCGACATTCCTGTATAGCTCCTCAAGCGTGGATTCGACAGGCTCACTGAGAAAAACTGCCTTTGTCGCTTTTTGAAGCTTCAAGCATGAGTCTTGGAATATTTGTGAAGCCGAAGGAAGTCCTTTAACATCAGAAATCGCCTTTAAAGAAATGCGTTTCGCTGTGGGGCCACAGTGATCAACTGCATGTGACAGTGTTTTTCGGAACCCATTGACTGATGCCTTACACTCCATAACTAACTAGTTCATGAAGACATTACGAAACTGTAG]
[+] EMBL CD132333             [                                                                                                                                                              TCAGGCTTGAGTACAATTCCATAATCATTTTTTGTGCACATATATCCTCGACATTCCTGTATAGCTCCTCAAGCGTGGATTCGACAGGCTCACTGAGAAAAACTGCCTTTGTCGCTTTTTGAAGCTTCAAGCATGAGTCTTGGAATATTTGTGAAGCCGAAGGAAGTCCTTTAACATCAGAAATCGCCTTTAAAGAAATGCGTTTCGC                                                                                                            ]




>consensus_9684#1
CAACACTGTGCCACTGCGCTGAGTTGGAAACCTACTGTGAAATTGAAACGTCAAGGTAAA
TAGACAAAAGAAGGGAAATGACAAAAACACATCAGCAAGAAAAGGATATTTTAAAAACTG
AGGTTGTAGTCCAGCTACATATTCACTGAATATAACCTTCAGGCTTGAGTACAATTCCAT
AATCATTTTTTGTGCACATATATCCTCGACATTCCTGTATAGCTCCTCAAGCGTGGATTC
GACAGGCTCACTGAGAAAAACTGCCTTTGTCGCTTTTTGAAGCTTCAAGCATGAGTCTTG
GAATATTTGTGAAGCCGAAGGAAGTCCTTTAACATCAGAAATCGCCTTTAAAGAAATGCG
TTTCGCTGTGGGGCCACAGTGATCAACTGCATGTGACAGTGTTTTTCGGAACCCATTGAC
TGATGCCTTACACTCCATAACTAACTAGTTCATGAAGACATTACGAAACTGTAG

consensusID : consensus_9684#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 268
fasta sequence

                              [TAAAACACGCATGAAACT-GGGATCATTTGAAAAGCACGATACAGTAATTTCCGAAAGAAAATCCCGTGAATCT-AAT-AAATTTTGAATCATATTGCGATCTTTTTCAGGATCGTGTGTTGGATTTTCCACCATTTCACGACCCATTTGTGTGATATAATTACGGAAATGTATCCGCAATTTTTCGATACCATTGGGAACTCGTGAAACTAAAGAAAACAATAAAGATAATTGGGAAGTTTGTTTTGTTTTCAGTGGATTGACTAAGCCG]

[+] EMBL CD120165             [TAAAACACGCATGAAACT GGGATCATTTGAAAAGCACGATACAGTAATTTCCGAAAGAAAATCCCGTGAATCT AAT AAATTTTGAATCATATTGCGATCTTTTTCAGGATCGTGTGTTGGATTTTCCACCATTTCACGACCCATTTGTGTGATATAATTACGGAAATGTATCCGCAATTTTTCGATACCATTGGGAACTCGTGAAACTAAAGAAAACAATAAAGATAATTGGGAAGTTTGTTTTGTTTTCAGTGGATTGACTAAGCC ]
[+] EMBL CD120281             [TAAAACACGCATGAAACT GGGATCATTTGAAAAGCACGATACAGTAATTTCCGAAAGAAAATCCCGTGAATCT AAT AAATTTTGAATCATATTGCGATCTTTTTCAGGATCGTGTGTTGGATTTTCCACCATTTCACGACCCATTTGTGTGATATAATTACGGAAATGTATCCGCAATTTTTCGATACCATTGGGAACTCGTGAAACTAAAGAAAACAATAAAGATAATTGGGAAGTTTGTTTTGTTTTCAGTGGATTGACTAAGCC ]
[-] EMBL CD120378             [ AAAACACGCATGAAACT GGGATCATTTGAAAAGCACGATACAGTAATTTCCGAAAGAAAATCCCGTGAATCT AAT AAATTTTGAATCATATTGCGATCTTTTTCAGGATCGTGTGTTGGATTTTCCACCATTTCACGACCCATTTGTGTGATATAATTACGGAAATGTATCCGCAATTTTTCGATACCATTGGGAACTCGTGAAACTAAAGAAAACAATAAAGATAATTGGGAAGTTTGTTTTGTTTTCAGTGGATTGACTAAGCCG]
[-] EMBL CD120397             [ AAAACACGCATGAAACT GGGATCATTTGAAAAGCACGATACAGTAATTTCCGAAAGAAAATCCCGTGAATCT AAT AAATTTTGAATCATATTGCGATCTTTTTCAGGATCGTGTGTTGGATTTTCCACCATTTCACGACCCATTTGTGTGATATAATTACGGAAATGTATCCGCAATTTTTCGATACCATTGGGAACTCGTGAAACTAAAGAAAACAATAAAGATAATTGGGAAGTTTGTTTTGTTTTCAGTGGATTGACTAAGCCG]
[-] EMBL CD120247             [  AAACACGCATG AACTNGGGATCATTTGAAAAGCACGATACAGTANNTTCNGAAGAAAAATCCNGTG ATCTNAATNAAATTNTGAATCATATTGCGATCTTTTTCAGGATCGTGTGTNGGATTTTCCACCATTTCACGACCCATTTGTGTGATATAATTACGGAAATGTATCCGCAATTTTTCGATACCATTGGGAACTCGTGAAACTAAAGAAAACAATAAAGATAATTGGGAAGTTTGTTTTGTTTTCAGTGGATTGACTAAGCCG]
[+] EMBL CD130604             [tgAAACACGCATGAAACT GGGATCATTTGAAAAGCACGATACAGTAATTTCCGATAGAAAATCCCGTGACTCT ATC TTATTTTGAATCATATTGCGATCTTTTTCAGGATC                                                                                                                                                             ]




>consensus_9684#2
TAAAACACGCATGAAACTGGGATCATTTGAAAAGCACGATACAGTAATTTCCGAAAGAAA
ATCCCGTGAATCTAATAAATTTTGAATCATATTGCGATCTTTTTCAGGATCGTGTGTTGG
ATTTTCCACCATTTCACGACCCATTTGTGTGATATAATTACGGAAATGTATCCGCAATTT
TTCGATACCATTGGGAACTCGTGAAACTAAAGAAAACAATAAAGATAATTGGGAAGTTTG
TTTTGTTTTCAGTGGATTGACTAAGCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9684#0      TTCCGAAACCAGAGTTGATATAAGCAAACTACGAGTTGAATTAGCATCTAAATATACAAC 60
consensus_9684#1      ------------------------------------------------------------
consensus_9684#2      ------------------------------------------------------------
                                                                                  

consensus_9684#0      AAGTCTATCTTCTTCCTCAATGATCCTTTTGTCCACATGTAGCAAATATTCAGGAACGCT 120
consensus_9684#1      ------------------------------------------------------------
consensus_9684#2      ------------------------------------------------------------
                                                                                  

consensus_9684#0      GAGTTGTCTAGATAAAGTATCTGCTTCATAAGCGTAGAGCTGTTGACTTTTACAAAGAAA 180
consensus_9684#1      ------------------------------------------------------------
consensus_9684#2      ------------------------------------------------------------
                                                                                  

consensus_9684#0      TTCCGCAAGAAATATTGAATCATAGAGTTTTAAATCCACCAGCATTCTGATGACAGTACG 240
consensus_9684#1      ------------------------------------------------------------
consensus_9684#2      ------------------------------------------------------------
                                                                                  

consensus_9684#0      TAAAAGTTGCCGATCAATAGCTTCTCCACATCGTTCTTTATGTATTTCATCCAGTATTTG 300
consensus_9684#1      ------------------------------------------------------------
consensus_9684#2      ------------------------------------------------------------
                                                                                  

consensus_9684#0      GCACATCAAACGGGACTGAACTTTCTCCTGAGTAATACATCTTCTCGGAACAACTTAAGA 360
consensus_9684#1      ------------------------------------------------------------
consensus_9684#2      ------------------------------------------------------------
                                                                                  

consensus_9684#0      GCTAGATCCCATATTTGTAAGTTCTGTGG-ATTTAGCTGAAGAAGTTGTCTATCCATAAA 419
consensus_9684#1      ------------------CAACACTGTGCCACTGCGCTGAGTTGGAAACCTACTGTGAAA 42
consensus_9684#2      ------------------------------------------------------------
                                                                                  

consensus_9684#0      AAGAAATATATTCCTGATGAGAAGCATTTTTTTACAGTATAATCCCCAACACTGTGCCAC 479
consensus_9684#1      TTGAAACG---TCAAGGTAAATAG---------ACAAAAGAAGGGAAATGACAAAAACAC 90
consensus_9684#2      ----------------------------------------------------TAAAACAC 8
                                                                               ***

consensus_9684#0      TGCGCTGAGTTGGAAACCTACTTTTAAAAACTGAGGTTGTAGT--CCAGCTACATATTCA 537
consensus_9684#1      ATCAGCAAG--AAAAGGATA-TTTTAAAAACTGAGGTTGTAGT--CCAGCTACATATTCA 145
consensus_9684#2      -GCATGAAACTGGGATCAT--TTGAAAAGCACGATACAGTAATTTCCGAAAGAAAATCCC 65
                        *    *      *   *  **  ***    **    *** *  **      * ** * 

consensus_9684#0      CTGAATATAACCTTCAGGCTTGAGTACAATTCCATAATCATTTTTTGTGCACATATATCC 597
consensus_9684#1      CTGAATATAACCTTCAGGCTTGAGTACAATTCCATAATCATTTTTTGTGCACATATATCC 205
consensus_9684#2      GTGAATCTAA---TAAATTTTGAATC--ATATTGCGATC-TTTTTCAGGATCGTGTGT-- 117
                       ***** ***   * *   **** *   **      *** *****   *  * * * *  

consensus_9684#0      TCGACATTCCTGTATAGCTCCTCAAGCGTGGATTCGACAGGCTCACTGAGAAAAACTGCC 657
consensus_9684#1      TCGACATTCCTGTATAGCTCCTCAAGCGTGGATTCGACAGGCTCACTGAGAAAAACTGCC 265
consensus_9684#2      TGGATTTTCCACCAT--TTCACGACCCATTTGTGTGATATAATTACGGAAA-----TGTA 170
                      * **  ****   **   **   *  * *   *  ** *   * ** ** *     **  

consensus_9684#0      TTTGTCGCTTCTTGAAGCTTCAAGCATGAGTCTTGGAATATTTGTGAAGCCGAAGGAAGT 717
consensus_9684#1      TTTGTCGCTTTTTGAAGCTTCAAGCATGAGTCTTGGAATATTTGTGAAGCCGAAGGAAGT 325
consensus_9684#2      TCCGCAATTTTTCGATACCATTGGGAA----CTCGTGAAACTAAAGAAAACAATAAAGAT 226
                      *  *    ** * **  *     * *     ** *  * * *   ***  * *   *  *

consensus_9684#0      CCTTTAACATCAGAAATCGCCTTTAAAGAAATGCGTTTCGCTGTGGGGCCACAGTGATCA 777
consensus_9684#1      CCTTTAACATCAGAAATCGCCTTTAAAGAAATGCGTTTCGCTGTGGGGCCACAGTGATCA 385
consensus_9684#2      AATTGGGAAGTTTGTTTTGTTTTCAGTGGATTG-ACTAAGCCG----------------- 268
                        **    *       * *  ** *  * * **   *  ** *                 

consensus_9684#0      ACTGCATGTGACAGTGTTTTTCGGAACCCATTGACTGATGC------------------- 818
consensus_9684#1      ACTGCATGTGACAGTGTTTTTCGGAACCCATTGACTGATGCCTTACACTCCATAACTAAC 445
consensus_9684#2      ------------------------------------------------------------
                                                                                  

consensus_9684#0      -----------------------------
consensus_9684#1      TAGTTCATGAAGACATTACGAAACTGTAG 474
consensus_9684#2      -----------------------------