These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9684#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 818 fasta sequence [TTCCGAAACCAGAGTTGATATAAGCAAACTACGAGTTGAATTAGCATCTAAATATACAACAAGTCTATCTTCTTCCTCAATGATCCTTTTGTCCACATGTAGCAAATATTCAGGAACGCTGAGTTGTCTAGATAAAGTATCTGCTTCATAAGCGTAGAGCTGTTGACTTTTACAAAGAAATTCCGCAAGAAATATTGAATCATAGAGTTTTAAATCCACCAGCATTCTGATGACAGTACGTAAAAGTTGCCGATCAATAGCTTCTCCACATCGTTCTTTATGTATTTCATCCAGTATTTGGCACATCAAACGGGACTGAACTTTCTCCTGAGTAAT-ACATCTTCTCGGAACAACTTAAGAGCTAGATCCCATATTTGTAAGTTCTGTGGATTTAGCTGAAGAAGTTGTCTATCCATAAAAAGAAATATATTCCTGATGAGAAGCATTTTTTTACAGTATAATCCCCAACACTGTGCCACTGCGCTGAGTTGGAAACCTACTTTTAAAAACTGAGGTTGTAGTCCAGCTACATATTCACTGAATATAACCTTCAGGCTTGAGTACAATTCCATAATCATTTTTTGTGCACATATATCCTCGACATTCCTGTATAGCTCCTCAAGCGTGGATTCGACAGGCTCACTGAGAAAAACTGCCTTTGTCGCTTCTTGAAGCTTCAAGCATGAGTCTTGGAATATTTGTGAAGCCGAAGGAAGTCCTTTAACATCAGAAATCGCCTTTAAAGAAATGCGTTTCGCTGTGGGGCCACAGTGATCAACTGCATGTGACAGTGTTTTTCGGAACCCATTGACTGATGC] [+] EMBL CD190760 [TTCCGAAACCAGAGTTGATATAAGCAAACTACGAGTTGAATTAGCATCTAAATATACAACAAGTCTATCTTCTTCCTCAATGATCCTTTTGTCCACATGTAGCAAATATTCAGGAACGCTGAGTTGTCTAGATAAAGTATCTGCTTCATAAGCGTAGAGCTGTTGACTTTTACAAAGAAATTCCGCAAGAAATATTGAATCATAGAGTTTTAAATCCACCAGCATTCTGATGACAGTACGTAAAAGTTGCCGATCAATAGCTTCTCCACATCGTTCTTTATGTATTTCATCCAGTATTTGGCACATCAAACGGGACTGAACTTTCTCCTGAGTAAT ACATCTTCTCGG ACAACTTAga ] [-] EMBL CD197414 [ ATCTTAATATACAACAAGTCTATCTTCTTCCTCAATGATCCCTTGGTCCACATGTAGCAAATATTCAGGAACGCTGAGTGGTCTAGATAAAGTATCTGCTTCATAAGCGTAGAGTTGTTGACTTTTACAAAGAAATTCCGCAAGAAATATTGAATCATAGAGTTTTAAATCCACCAGCATTCTGATGACAGTACGTAAAAGTTGCCGATCAATAGCTTCTCCACATCGTTCTTTATGTATTTCATCCAGTATTTGGCACATCAAACGGGACTGAACTTTCTCCTGAGTAATAACATCTTCTCGGAACAACTTAAGAGCTAGATCCCATATTTGTAAGTTCTGTGGATTTAGCTGAAGAAGTTGTCTATCCATAAAAAGAAATATATTCCTGATGAGAAGCATTT ] [+] EMBL CD184764 [ CTTCTCGGAACAACTTAAGAGCTAGATCCCATATTTGTAAGTTCTGTGGATTTAGCTGAAGAAGTTGTCTATCCATAAAAAGAAATATATTCCTGATGAGAAGCATTTTTTTACAGTATAATCCCCAACACTGTGCCACTGCGCTGAGTTGGAAACCTACTTTTAAAAACTGAGGTTGTAGTCCAGCTACATATTCACTGAATATAACCTTCAGGCTTGAGTACAATTCCATAATCATTTTTTGTGCACATATATCCTCGACATTCCTGTATAGCTCCTCAAGCGTGGATTCGACAGGCTCACTGAGAAAAACTGCCTTTGTCGCTTCTTGAAGCTTCAAGCATGAGTCTTGGAATATTTGTGAAGCCGAAGGAAGTCCTTTAACATCAGAAATCGCCTTTAAAGAAATGCGTTTCGCTGTGGGGCCACAGTGATCAACTGCATGTGACAGTGTTTTTCGGAACCCATTGACTGATGC] consensusID : consensus_9684#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 474 fasta sequence [CAACACTGTGCCACTGCGCTGAGTTGGAAACCTACTGTGAAATTGAAACGTCAAGGTAAATAGACAAAAGAAGGGAAATGACAAAAACACATCAGCAAGAAAAGGATATTTTAAAAACTGAGGTTGTAGTCCAGCTACATATTCACTGAATATAACCTTCAGGCTTGAGTACAATTCCATAATCATTTTTTGTGCACATATATCCTCGACATTCCTGTATAGCTCCTCAAGCGTGGATTCGACAGGCTCACTGAGAAAAACTGCCTTTGTCGCTTTTTGAAGCTTCAAGCATGAGTCTTGGAATATTTGTGAAGCCGAAGGAAGTCCTTTAACATCAGAAATCGCCTTTAAAGAAATGCGTTTCGCTGTGGGGCCACAGTGATCAACTGCATGTGACAGTGTTTTTCGGAACCCATTGACTGATGCCTTACACTCCATAACTAACTAGTTCATGAAGACATTACGAAACTGTAG] [-] EMBL CD184697 [CAACACTGTGCCACTGCGCTGAGTTGGAAACCTACTGTGAAATTGAAACGTCAAGGTAAATAGACAAAAGAAGGGAAATGACAAAAACACATCAGCAAGAAAAGGATATTTTAAAAACTGAGGTTGTAGTCCAGCTACATATTCACTGAATATAACCTTCAGGCTTGAGTACAATTCCATAATCATTTTTTGTGCACATATATCCTCGACATTCCTGTATAGCTCCTCAAGCGTGGATTCGACAGGCTCACTGAGAAAAACTGCCTTTGTCGCTTTTTGAAGCTTCAAGCATGAGTCTTGGAATATTTGTGAAGCCGAAGGAAGTCCTTTAACATCAGAAATCGCCTTTAAAGAAATGCGTTTCGCTGTGGGGCCACAGTGATCAACTGCATGTGACAGTGTTTTTCGGAACCCATTGACTGATGCCTTACACTCCATAACTAACTAGTTCATGAAGACATTACGAAACTGTAG] [+] EMBL CD132333 [ TCAGGCTTGAGTACAATTCCATAATCATTTTTTGTGCACATATATCCTCGACATTCCTGTATAGCTCCTCAAGCGTGGATTCGACAGGCTCACTGAGAAAAACTGCCTTTGTCGCTTTTTGAAGCTTCAAGCATGAGTCTTGGAATATTTGTGAAGCCGAAGGAAGTCCTTTAACATCAGAAATCGCCTTTAAAGAAATGCGTTTCGC ] consensusID : consensus_9684#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 268 fasta sequence [TAAAACACGCATGAAACT-GGGATCATTTGAAAAGCACGATACAGTAATTTCCGAAAGAAAATCCCGTGAATCT-AAT-AAATTTTGAATCATATTGCGATCTTTTTCAGGATCGTGTGTTGGATTTTCCACCATTTCACGACCCATTTGTGTGATATAATTACGGAAATGTATCCGCAATTTTTCGATACCATTGGGAACTCGTGAAACTAAAGAAAACAATAAAGATAATTGGGAAGTTTGTTTTGTTTTCAGTGGATTGACTAAGCCG] [+] EMBL CD120165 [TAAAACACGCATGAAACT GGGATCATTTGAAAAGCACGATACAGTAATTTCCGAAAGAAAATCCCGTGAATCT AAT AAATTTTGAATCATATTGCGATCTTTTTCAGGATCGTGTGTTGGATTTTCCACCATTTCACGACCCATTTGTGTGATATAATTACGGAAATGTATCCGCAATTTTTCGATACCATTGGGAACTCGTGAAACTAAAGAAAACAATAAAGATAATTGGGAAGTTTGTTTTGTTTTCAGTGGATTGACTAAGCC ] [+] EMBL CD120281 [TAAAACACGCATGAAACT GGGATCATTTGAAAAGCACGATACAGTAATTTCCGAAAGAAAATCCCGTGAATCT AAT AAATTTTGAATCATATTGCGATCTTTTTCAGGATCGTGTGTTGGATTTTCCACCATTTCACGACCCATTTGTGTGATATAATTACGGAAATGTATCCGCAATTTTTCGATACCATTGGGAACTCGTGAAACTAAAGAAAACAATAAAGATAATTGGGAAGTTTGTTTTGTTTTCAGTGGATTGACTAAGCC ] [-] EMBL CD120378 [ AAAACACGCATGAAACT GGGATCATTTGAAAAGCACGATACAGTAATTTCCGAAAGAAAATCCCGTGAATCT AAT AAATTTTGAATCATATTGCGATCTTTTTCAGGATCGTGTGTTGGATTTTCCACCATTTCACGACCCATTTGTGTGATATAATTACGGAAATGTATCCGCAATTTTTCGATACCATTGGGAACTCGTGAAACTAAAGAAAACAATAAAGATAATTGGGAAGTTTGTTTTGTTTTCAGTGGATTGACTAAGCCG] [-] EMBL CD120397 [ AAAACACGCATGAAACT GGGATCATTTGAAAAGCACGATACAGTAATTTCCGAAAGAAAATCCCGTGAATCT AAT AAATTTTGAATCATATTGCGATCTTTTTCAGGATCGTGTGTTGGATTTTCCACCATTTCACGACCCATTTGTGTGATATAATTACGGAAATGTATCCGCAATTTTTCGATACCATTGGGAACTCGTGAAACTAAAGAAAACAATAAAGATAATTGGGAAGTTTGTTTTGTTTTCAGTGGATTGACTAAGCCG] [-] EMBL CD120247 [ AAACACGCATG AACTNGGGATCATTTGAAAAGCACGATACAGTANNTTCNGAAGAAAAATCCNGTG ATCTNAATNAAATTNTGAATCATATTGCGATCTTTTTCAGGATCGTGTGTNGGATTTTCCACCATTTCACGACCCATTTGTGTGATATAATTACGGAAATGTATCCGCAATTTTTCGATACCATTGGGAACTCGTGAAACTAAAGAAAACAATAAAGATAATTGGGAAGTTTGTTTTGTTTTCAGTGGATTGACTAAGCCG] [+] EMBL CD130604 [tgAAACACGCATGAAACT GGGATCATTTGAAAAGCACGATACAGTAATTTCCGATAGAAAATCCCGTGACTCT ATC TTATTTTGAATCATATTGCGATCTTTTTCAGGATC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9684#0 TTCCGAAACCAGAGTTGATATAAGCAAACTACGAGTTGAATTAGCATCTAAATATACAAC 60 consensus_9684#1 ------------------------------------------------------------ consensus_9684#2 ------------------------------------------------------------ consensus_9684#0 AAGTCTATCTTCTTCCTCAATGATCCTTTTGTCCACATGTAGCAAATATTCAGGAACGCT 120 consensus_9684#1 ------------------------------------------------------------ consensus_9684#2 ------------------------------------------------------------ consensus_9684#0 GAGTTGTCTAGATAAAGTATCTGCTTCATAAGCGTAGAGCTGTTGACTTTTACAAAGAAA 180 consensus_9684#1 ------------------------------------------------------------ consensus_9684#2 ------------------------------------------------------------ consensus_9684#0 TTCCGCAAGAAATATTGAATCATAGAGTTTTAAATCCACCAGCATTCTGATGACAGTACG 240 consensus_9684#1 ------------------------------------------------------------ consensus_9684#2 ------------------------------------------------------------ consensus_9684#0 TAAAAGTTGCCGATCAATAGCTTCTCCACATCGTTCTTTATGTATTTCATCCAGTATTTG 300 consensus_9684#1 ------------------------------------------------------------ consensus_9684#2 ------------------------------------------------------------ consensus_9684#0 GCACATCAAACGGGACTGAACTTTCTCCTGAGTAATACATCTTCTCGGAACAACTTAAGA 360 consensus_9684#1 ------------------------------------------------------------ consensus_9684#2 ------------------------------------------------------------ consensus_9684#0 GCTAGATCCCATATTTGTAAGTTCTGTGG-ATTTAGCTGAAGAAGTTGTCTATCCATAAA 419 consensus_9684#1 ------------------CAACACTGTGCCACTGCGCTGAGTTGGAAACCTACTGTGAAA 42 consensus_9684#2 ------------------------------------------------------------ consensus_9684#0 AAGAAATATATTCCTGATGAGAAGCATTTTTTTACAGTATAATCCCCAACACTGTGCCAC 479 consensus_9684#1 TTGAAACG---TCAAGGTAAATAG---------ACAAAAGAAGGGAAATGACAAAAACAC 90 consensus_9684#2 ----------------------------------------------------TAAAACAC 8 *** consensus_9684#0 TGCGCTGAGTTGGAAACCTACTTTTAAAAACTGAGGTTGTAGT--CCAGCTACATATTCA 537 consensus_9684#1 ATCAGCAAG--AAAAGGATA-TTTTAAAAACTGAGGTTGTAGT--CCAGCTACATATTCA 145 consensus_9684#2 -GCATGAAACTGGGATCAT--TTGAAAAGCACGATACAGTAATTTCCGAAAGAAAATCCC 65 * * * * ** *** ** *** * ** * ** * consensus_9684#0 CTGAATATAACCTTCAGGCTTGAGTACAATTCCATAATCATTTTTTGTGCACATATATCC 597 consensus_9684#1 CTGAATATAACCTTCAGGCTTGAGTACAATTCCATAATCATTTTTTGTGCACATATATCC 205 consensus_9684#2 GTGAATCTAA---TAAATTTTGAATC--ATATTGCGATC-TTTTTCAGGATCGTGTGT-- 117 ***** *** * * **** * ** *** ***** * * * * * consensus_9684#0 TCGACATTCCTGTATAGCTCCTCAAGCGTGGATTCGACAGGCTCACTGAGAAAAACTGCC 657 consensus_9684#1 TCGACATTCCTGTATAGCTCCTCAAGCGTGGATTCGACAGGCTCACTGAGAAAAACTGCC 265 consensus_9684#2 TGGATTTTCCACCAT--TTCACGACCCATTTGTGTGATATAATTACGGAAA-----TGTA 170 * ** **** ** ** * * * * ** * * ** ** * ** consensus_9684#0 TTTGTCGCTTCTTGAAGCTTCAAGCATGAGTCTTGGAATATTTGTGAAGCCGAAGGAAGT 717 consensus_9684#1 TTTGTCGCTTTTTGAAGCTTCAAGCATGAGTCTTGGAATATTTGTGAAGCCGAAGGAAGT 325 consensus_9684#2 TCCGCAATTTTTCGATACCATTGGGAA----CTCGTGAAACTAAAGAAAACAATAAAGAT 226 * * ** * ** * * * ** * * * * *** * * * * consensus_9684#0 CCTTTAACATCAGAAATCGCCTTTAAAGAAATGCGTTTCGCTGTGGGGCCACAGTGATCA 777 consensus_9684#1 CCTTTAACATCAGAAATCGCCTTTAAAGAAATGCGTTTCGCTGTGGGGCCACAGTGATCA 385 consensus_9684#2 AATTGGGAAGTTTGTTTTGTTTTCAGTGGATTG-ACTAAGCCG----------------- 268 ** * * * ** * * * ** * ** * consensus_9684#0 ACTGCATGTGACAGTGTTTTTCGGAACCCATTGACTGATGC------------------- 818 consensus_9684#1 ACTGCATGTGACAGTGTTTTTCGGAACCCATTGACTGATGCCTTACACTCCATAACTAAC 445 consensus_9684#2 ------------------------------------------------------------ consensus_9684#0 ----------------------------- consensus_9684#1 TAGTTCATGAAGACATTACGAAACTGTAG 474 consensus_9684#2 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||