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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9688#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1080 fasta sequence
[ATATTAAATTGCTAGCACAGTGATAATCCCTCTAGTTTTTTTTCTCGTTGATTTGAT-ATAGAAAAAACATGAAGAAAATCTCATTTTCTCCGGAAGTATGGACAAAGATATTTATTGTAGTGAATAGTTTATTTATAGTATTCAGTTTTATTATGTTTGCACTAGGTATTAGTGCATTAGATACATTACTTAAACATAATACAATTATACAAGTGGCACCACCAGCAATCTTTGGAACTGTTATATTTACAGGATTAGTTGGAATTATAGCATCAAGTGTTGGATTTCTTGGATTATGGAGAAAAATGAAAATGATTGCTTTTGTGCATATGATTGGTTTGGGTATAGCAACATTTTTAAATATATGTATTGCTATTGCAGCAGTTGCCACACAAGATCAATATGCATCAGATGTACAACAATCGTTGCTTAATTCTATATCAAATTATAATCAAACTTCATATTCAGTGGAATTCGATAAGTTACAGACTAGTTTCTATTGTTGTGGAGCTACCTCGTACAGAG-ATTATAGACAATATCAAATGAAGATACCACCGTC-TTGTA-GAGTTGGTG-AATTGACCTATGCAACAGGTTGTATTGAAGAAATAGCTGGTTTTGCACAACAATACTCAAATATATTAATAGGTCTATGTTTTCTCACAGCTATTCTTCAAGGTGTCTATTTAGGCATCTCAATTTGGATGATTCGTAAATCTGATGATGGAGTTGCTTTCTCTGCATAAACATTATATACCATTAAAGATCATGATCGTTATTATTATGGCAAAGGAAAGAAAAAAACTGACAAAAATACCANTTNNTTTGGTTCTTTTCATTCCATTTTGGATTCTATCACTTTTGGGNTCTGGGCTAAACACATGAACTAATGTTACCCGACAATAACCATATAAGACGGNTATTACTTATTATTCAACTCATATCTTTGGACTATATCATGACTACATATTGGATGAGTCTCCAATGAATGCCATCCCA-TAGTATTTCTTAGGTGGCGGNGGTGGCA-GGTAACC-ATGTATTGTAATTACCTTTTTAATACATAAATCTAAAAGATGTATTATA]
[+] EMBL CD084135 [ATATTAAATTGCTAGCACAGTGATAATCCCTCTAGTTTTTTTTCTCGTTGATTAGAT ATAGAAAAAACATGAAGAAAATCTCATTTTCTCCGGAAGTATGGACAAAGATATTTATTGTAGTGAATAGTTTATTTATAGTATTCAGTTTTATTATGTTTGCACTAGGTATTAGTGCATTAGATACATTACTTAAACATAATACAATTATACAAGTGGCACCACCAGCAATCTTTGGAACTGTTATATTTACAGGATTAGTTGGAATTATAGCATCAAGTGTTGGATTTCTTGGATTATGGAGAAAAATGAAAATGATTGCTTTTGTGCATATGATTGGTTTGGGTATAGCAACATTTTTAAAT ]
[-] EMBL CD196267 [ TGATAATAGAAAAAACATGAAGAAAATCTCATTTTCTCCGGAAGTATGGACAAAGATATTTATTGTAGTGAATAGTTTATTCATAGTATTCAGTTTTATTATGTTTGCACTAGGTATTAGTGCATTAGATACATTACTTAAACATAATACAATTATACAAGTGGCACCACCAGCAATCTTTGGAACTGTTATATTTACAGGATTAGTTGGAATTATAGCATCAAGTGTTGGATTTCTTGGATTATGGAGAAAAATGAAAATGATTGCTTTTGTGCATATGATTGGTTTGGGTATAGCAACATTTTTAAATATATGTATTGCTATTGCAG ]
[-] EMBL CD196343 [ TGATAATAGAAAAAACATGAAGAAAATCTCA TTTCTCCGGAAGTATGGACAAAGATATTTATTGTAGTGAATAGTTTATTTATAGTATTCAGTTTTATTATGTTTGCACTAGGTATTAGTGCATTAGATACATTACTTAAACATAATACAATTATACAAGTGGCACCACCAGCAATCTTTGGAACTGTTATATTTACAGGATTAGTTGGAATTATAGCATCAAGTGTTGGATTTCTTGGATTATGGAGAAAAATGAAAATGATTGCTTTTGTGCATATGATTGGTTTGGGTATAGCAACATTTTTAAATATATGTATTGCTATTGCAG ]
[+] EMBL AW466250 [ AAAATGAAAATGATTGCTTTTGTGCATATGATTGGTTTGGGTATAGCAACATTTTTAAATATATGTATTGCTATTGCAGCAGTTGCCACACAAGATCAATATGCATCAGATGTACAACAATCGTTGCTTAATTCTATATCAAATTATAATCAAACTTCATATTCAGTGGAATTCGATAAGTTACAGACTAGTTTCTATTGTTGTGGAGCTACCTCGTACAGAG ATTATAGACAATATCAAATGAAGATACCACCGTC TTGTA NAGTTGGTG AATTGACCTATGCAACAGGTTGTATTGAAGAAATAGCTGGTTTTGCACAACAATACTCAAATATATTAATAGGTCTATGTTTTCTCACAGCTATTCTTCAAGGTGTCTATTTAGGCATCTCAATTTGGATGATTCGTAAATCTGATGATGGAGTTGCTTTCTCTGCATAAACATTATATAC ]
[+] EMBL CD171169 [ ATAAGTTACAGACTAGTTTCTATTGTTGTGGAGCTACCTCGTACAGAG ATTATAGACAATATCAAATGAAGATACCACCGTC TTGTA GAGTTGGTG AATTGACCTATGCAACAGGTTGTATTGAAGAAATAGCTGGTTTTGCACAACAATACTCAAATATATTAATAGGTCTATGTTTTCTCACAGCTATTCTTCAAGGTGTCTATTTAGGCATCTCAATTTGGATG ]
[+] EMBL CD171181 [ ATAAGTTACAGACTAGTTTCTATTGTTGTGGAGCTACCTCGTACAGAG ATTATAGACAATATCAAATGAAGATACCACCGTC TTGTA GAGTTGGTG AATTGACCTATGCAACAGGTTGTATTGAAGAAATAGCTGGTTTTGCACAACAATACTCAAATATATTAATAGGTCTATGTTTTCTCACAGCTATTCTTCAAGGTGTCTATTTAGGCATCTCAATTTGGATG ]
[+] EMBL SM929 [ AGNTACCTCGTACAGAGNATTATAGACAATATCAAATGAAGATACCACCGNCNTNGTAGGAGTTGGTGNAATTGACCTATGCAACAGGTTGTNTTGAAGAAATAGCTGGTTTTGCACAACAATACTCAAATATATTAATAGGTCTATGTNTNCTCACAGCTATTCTTCAAGGTGTCTATTTAGGCATCTCAATTTGGATGATTCGCAAATCTGATGATGGAGTTGCTTTCTCTGCATAAACATTATATACCATTAAAGATCATGATCGTTATTATTATGGCAAAGGAAAGAAAAAAACTGACAAAAATACCANTTNNTTTGGTTCTTTTCATTCCATTTTGGATTCTATCACTTTTGGGNTCTGGGCTAAACACATGAACTAATGTTACCCGACAATAACCATATAAGACGGNTATTACTTATTATTCAACTCATATCTTTGGACTATATCATGACTACATATTGGATGAGTCTCCAATGAATGCCATCCCA TAGTATTTCTTAGGTGGCGGNGGTGGCA GGTAACC ATGT ]
[+] EMBL AI977163 [ AACAGGTTGTATTGAAGAAATAGCTGGTTTTGCACAACAATACTCAAATATATTAATAGGTCTATGTTTTCTCACAGCTATTCTTCAAGGTGTCTATTTAGGCATCTCAATTTGGATGATTCGTAAATCTGATGATGGAGTTGCTTTCTCTGCATAAACATTATATACCATTAAAGATCATGATCGTTATTATTATGGCAAAGGAAAGAAAAAAACTGACAAAAATACCA TTTTTTTTGTTCTTTTCATTCCATTTT GATTCTATCACTTTTTGTTTCTGGGCTAAACACATGAACTAATGTTA CCGACAATAAACATATAAGACGGTTATTACTTATTATTCAACTCATATCTTT GACTATATCATGACTACATATTGAATGAGTCTTCAATGAATGCCATTCCATTAGTATTTCTAAGTTGTCGTAGTTGCCATGGTAACCAATGTATTGTAATTACCTTTTTAATACATAAATCTAAAAGATGTATTATA]
consensusID : consensus_9688#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 358 fasta sequence
[ATGATGGAGTTGCTTTCTCTGCATAAACATTATATACCATTAAAGATCATGASCGTTATTATTATGGCAAAGGAAAGAAAAAAACTGACAAAAATACCATTTTTTTTGTTCTTTTCATTCCATTTTGATTCTATCACTTTTTGTGTCTGGGCTAAACACATGAACTAATGTTACCGACAATAAACATATAAGACGGTTATTACTTATTATTCAACTCATATCTTTGACTATARCATGACTACATATTGAATGAGTCTTCAATGAATGCCATTCCATTAGTATTTACTAAGTTGTCGTAGTTGCCATGGTAACCAATGTATTGTAATTACCTTTTTAATACATAAATCTAANAGATGTA]
[-] EMBL SMAA28908 [ATGATGGAGTTGCTTTCTCTGCATAAACATTATATACCATTAAAGATCATGASCGTTATTATTATGGCAAAGGAAAGAAAAAAACTGACAAAAATACCATTTTTTTTGTTCTTTTCATTCCATTTTGATTCTATCACTTTTTGTGTCTGGGCTAAACACATGAACTAATGTTACCGACAATAAACATATAAGACGGTTATTACTTATTATTCAACTCATATCTTTGACTATARCATGACTACATATTGAATGAGTCTTCAATGAATGCCATTCCATTAGTATTTACTAAGTTGTCGTAGTTGCCATGGTAACCAATGTATTGTAATTACCTTTTTAATACATAAATCTAANAGATGTA]
[-] EMBL CD180168 [ TTTCTCTGCATAAACATTATATACCATTAAAGATCATGATCGTTATTATTATGGCAAAGGAAAGAAAAAATCTGACAAAAATACCA TTTTTTTGTTCTTTTCATTCCATTTTGATTATATCACTTTTTGTTTCTGGGCTAAACACATGAAATAATGTTTCCGACAATAAACATATAAGACGGTTATTA ]
[+] EMBL SM501 [ ATTCAACTCATATCTTTGACTATATCATGACTACATATTGAATGAGTCTTCAATGAATGCCATTCCATTAGTATTT CTAAGTTGTCGTAGTTGCCATGGTA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9688#0 ATATTAAATTGCTAGCACAGTGATAATCCCTCTAGTTTTTTTTCTCGTTGATTTGATATA 60
consensus_9688#1 ------------------------------------------------------------
consensus_9688#0 GAAAAAACATGAAGAAAATCTCATTTTCTCCGGAAGTATGGACAAAGATATTTATTGTAG 120
consensus_9688#1 ------------------------------------------------------------
consensus_9688#0 TGAATAGTTTATTTATAGTATTCAGTTTTATTATGTTTGCACTAGGTATTAGTGCATTAG 180
consensus_9688#1 ------------------------------------------------------------
consensus_9688#0 ATACATTACTTAAACATAATACAATTATACAAGTGGCACCACCAGCAATCTTTGGAACTG 240
consensus_9688#1 ------------------------------------------------------------
consensus_9688#0 TTATATTTACAGGATTAGTTGGAATTATAGCATCAAGTGTTGGATTTCTTGGATTATGGA 300
consensus_9688#1 ------------------------------------------------------------
consensus_9688#0 GAAAAATGAAAATGATTGCTTTTGTGCATATGATTGGTTTGGGTATAGCAACATTTTTAA 360
consensus_9688#1 ------------------------------------------------------------
consensus_9688#0 ATATATGTATTGCTATTGCAGCAGTTGCCACACAAGATCAATATGCATCAGATGTACAAC 420
consensus_9688#1 ------------------------------------------------------------
consensus_9688#0 AATCGTTGCTTAATTCTATATCAAATTATAATCAAACTTCATATTCAGTGGAATTCGATA 480
consensus_9688#1 ------------------------------------------------------------
consensus_9688#0 AGTTACAGACTAGTTTCTATTGTTGTGGAGCTACCTCGTACAGAGATTATAGACAATATC 540
consensus_9688#1 ------------------------------------------------------------
consensus_9688#0 AAATGAAGATACCACCGTCTTGTAGAGTTGGTGAATTGACCTATGCAACAGGTTGTATTG 600
consensus_9688#1 ------------------------------------------------------------
consensus_9688#0 AAGAAATAGCTGGTTTTGCACAACAATACTCAAATATATTAATAGGTCTATGTTTTCTCA 660
consensus_9688#1 ------------------------------------------------------------
consensus_9688#0 CAGCTATTCTTCAAGGTGTCTATTTAGGCATCTCAATTTGGATGATTCGTAAATCTGATG 720
consensus_9688#1 ---------------------------------------------------------ATG 3
***
consensus_9688#0 ATGGAGTTGCTTTCTCTGCATAAACATTATATACCATTAAAGATCATGATCGTTATTATT 780
consensus_9688#1 ATGGAGTTGCTTTCTCTGCATAAACATTATATACCATTAAAGATCATGASCGTTATTATT 63
************************************************* **********
consensus_9688#0 ATGGCAAAGGAAAGAAAAAAACTGACAAAAATACCANTTNNTTTGGTTCTTTTCATTCCA 840
consensus_9688#1 ATGGCAAAGGAAAGAAAAAAACTGACAAAAATACCATTTTTTTTG-TTCTTTTCATTCCA 122
************************************ ** **** **************
consensus_9688#0 TTTTGGATTCTATCACTTTTGGGNTCTGGGCTAAACACATGAACTAATGTTACCCGACAA 900
consensus_9688#1 TTTTG-ATTCTATCACTTTTTGTGTCTGGGCTAAACACATGAACTAATGTTACC-GACAA 180
***** ************** * ****************************** *****
consensus_9688#0 TAACCATATAAGACGGNTATTACTTATTATTCAACTCATATCTTTGGACTATATCATGAC 960
consensus_9688#1 TAAACATATAAGACGGTTATTACTTATTATTCAACTCATATCTTTG-ACTATARCATGAC 239
*** ************ ***************************** ****** ******
consensus_9688#0 TACATATTGGATGAGTCTCCAATGAATGCCATCCCAT-AGTATTTCTTAGGTGGCGGNGG 1019
consensus_9688#1 TACATATTGAATGAGTCTTCAATGAATGCCATTCCATTAGTATTTACTAAGTTGTCGTAG 299
********* ******** ************* **** ******* ** ** * * *
consensus_9688#0 TGGCA--GGTAACCA-TGTATTGTAATTACCTTTTTAATACATAAATCTAAAAGATGTAT 1076
consensus_9688#1 TTGCCATGGTAACCAATGTATTGTAATTACCTTTTTAATACATAAATCTAANAGATGTA- 358
* ** ******** *********************************** *******
consensus_9688#0 TATA 1080
consensus_9688#1 ----
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||