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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9689#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1657 fasta sequence
[GGTTACCAAGCAAATTTAGATTGCCGTACAAGAGATAATCAAACACCCTTACATGTCACTGTCCGTACAAATTATCTGCCTATTGTTGAACTGTTATTGAATGCTGGTTCCGATCCTAATATAATGACAAAAGATAATTATACACCATTACATGTAGCTATTAAAGAAGACTCAGATGATATTGTTAGAATATTAATTGAGCACGATGCTAATCCGGAGGTTAAAACGAAGAAAGGATTTACACCCTTACACTTAGCAGCAAAATATGGTTCATGCAAAACAGCCCACTTGTTAATGGAAAGAACAAAGTCTGATCCAAACGCAACTGGTCCCAATGGCTTCACGCCTGTACACGTGGCCACATTCTACAATAATAACAAAATGCTGGATAAGTTGATAGAATTTGGAGGTGATGTCAATCGACCTGTCAAGAATGGCTTTACGCCACTTCATTTAGCAACTAAACGAAATCATCTGGATTCAATCCACTTATTAATATCCAAAGGAGCCATAACTGATAAAGGTTCAAGGAACGGTTATACACCACTTCATTTAGCCTCACAAGATGGTCAAATCGAAATAGTTAAAGTTCTCGCTGAAAAATACAAAGCTCAAGTGGATGCTGCAGCCAAAGACGGTTTAACACCACTACACTTGGCGGTACAAGAAGACAAAGTTAGTGTAGCTGAATATTTATTAAGTTCAGGTGCGTCCATTAATACGAAAACATTGAAAGCTGGATTTACACCGCTACATTCATCTGCTTATAGGGGACAGCTCGCCTCTGTTCGTTTACTTCTATCATGTGTCCCTGAACATGAACTTCAGCAAGTTATAAACAGTCGCACTCATATGGGTTCAACTCCACTGCATTTGGCAGCACAACAAGGTCATCTACAAGTAGCTCTAAAACTGATTCAAATGGGAGCTGATCCAAACATTTGTAATAAGCAAGGATGGACAGCAGCAAAATTAGCTCATAAGCAACATTACTTGAACTTGTTCGAATTGTTGCAATCGATTACAACTAATGGCGGTGATGGGAGTTTACCTAGTTCAAATGGAATAGATGATAATGTAAATCTAATCAATGGTGTAATGCCCTTAGAAAAAGCGGAATATATGACCGATCATATGATTTCAGATAGTGAAGATGAAGCCGAACTTTTATCTACACCAGCAATGTTTCGATATCCCAAACAATGTAAAGGAAATTTTGATGAAACAGGAGACAACGATATGACATCAATTCCAAGTACACCAACTATGGGTAATAAACTCATATCAGTCCGCCCAACAACACTGCATATTCCTGAATATCATTTAACTGCCTTAGGGGGTGAAACTCTTTGCTCCAGTCTTCATGAAAGTATGACCGAGGAACGCGTGAAGCTGATGCTCAATGGAAAAGAGGATCCAGTTACAACTTCACAACAGCCAGTTCAGATGGCTATTACTGCACCGTCACCTGCTGCTCTATCAGAATGGGATTTTGATGTAGATAATGTTCATTCGACGGAGAATTTAGTTGAGTCGGGGTTTCTTATCTCTTTTATCATCGATGCTCGAGGTGGTCTAGTTGAAGCTCAAAGACGACCTGGTTTACGATTTATTGTACCGCCTAATGCACCTTCTGGACCACTACGTATAATTTGCC]
[+] EMBL CD149574 [GGTTACCAAGCAAATTTAGATTGCCGTACAAGAGATAATCAAACACCCTTACATGTCACTGTCCGTACAAATTATCTGCCTATTGTTGAACTGTTATTGAATGCTGGTTCCGATCCTAATATAATGACAAAAGATAATTATACACCATTACATGTAGCTATTAAAGAAGACTCAGATGATATTGTTAGAATATTAATTGAGCACGATGCTAATCCGGAGGTTAAAACGAAGAAAGGATTTACACCCTTACACTTAGCAGCAAAATATGGTTCATGCAAAACAGCCCACTTGTTAATGGAAAGAACAAAGTCTGATCCAAACGCAACTGGTCCCAATGGCTTCACGCCTGTACACGTGGCCACATTCTACAATAATAACAAAATGCTGGATAAGTTGATAGAATTTGGAGGTGATGTCAATCGACCTGTCAAGAATGGC ]
[+] EMBL CD067112 [ AACGAATAAAGGATTTACACCCTCACACTTAGCAGCAAAATATGGTTCATGCAAAACAGCCCACTTGTTAATGGAAAGAACAAAGTCTGATCCAAACGCAACTGGTCCCAATGGCTTCACGCCTGTACACGTGGCCACATTCTACAATAATAACAAAATGCTGGATAAGACGATAGAATTTGGAGGTGATGTCAATCCACCTGTCAAGAATGGCTTTACGCCACTTCATTTAGCAACTAAACGAAATCATCTGGATTCAATCCACTTATTAATATCCAAAGGAGCCATAACTGATAAAGGTTCAAGGAACGGTTATACACCACTTCATTTAGCCTCACAAGATGGTCAAATCGAAATAGTTAAAGTTCTCGCTGAAAAATACAAAGCTCAAGTGGA ]
[+] EMBL CD168631 [ TAGCAGCAAAATATGGTTCATGCAAAACAGCCCACTTGTTAATGGAAAGAACAAAGTCTGATCCAAACGCAACTGGTCCCAATGGCTTCACGCCTGTACACGTGGCCACATTCTACAATAATAACAAAATGCTGGATAAGTTGATAGAATTTGGAGGTGATGTCAATCGACCTGTCAAGAATGGCTTTACGCCACTTCATTTAGCAACTAAACGAAATCATCTGGATTCAATCCACTTATTAATATCCAAAGGAGCCATAACTGATAAAGGTTCAAGGAACGGTTATACACCACTTCATTTAGCCTCACAAGATGGTCAAATCGAAATAGTTAAAGTTCTCGCTGAAAAATACAAAGCTCAAGTGGATGCTGCAGCCAAAGACGGTTTAACAC ]
[-] EMBL CD149450 [ GAATTTGGAGGTGATGTCAATCGACCTGTCAAGAATGGCTTTACGCCACTTCATTTAGCAACTAAACGAAATCATCTGGATTCAATCCACTTATTAATACCCAAAGGAGCCATAACTGATAAAGGTTCAAGGAACGGTTATACACCACTTCATTTAGCCTCACAAGATGGTCAAATCGAAATAGTTAAAGTTCTCGCTGAAAAATACAAAGCTCAAGTGGATGCTGCAGCCAAAGACGGTTTAACACCACTACACTTGGCGGTACAAGAAGACAAAGTTAGTGTAGCTGAATATTTATTAAGTTCAGGTGCGTCCATTAATACGAAAACATTGAAAGCTGGATTTACACCGCTACATTCACCTGCTT ]
[-] EMBL CD131054 [ TGCAGCCAAAGACGGTTTAACACCACTACATTTGGCGGTACAAGAAGACAAAGTTAGTGTAGCTGAATATTTATTAAGTTCAGGTGCGTCCATTAATACGAAAACATTGAAAGCTGGATTTACACCGCTACATTCATCTGCTTATAGGGGACAGCTCGCCTCTGTTCGTTTACTTCTATCATGTGTCCCTGAACATGAACTTCAGCAAGTTATAAACAGTCGCACTCATATGGGTTCAACTCCACTGCATTTGGCAGCACAACAAGGTCATCTACAAGTAGCTCTAAAACTGATTCAAATGGGAGCTGATCCAAACATTTGTAATAAGCAAGGATGGACAGCAGCAAAATTAGCTCATAAGCAACATTACTTGAACTTGTTCGAATTGTTGCAATCGATTA ]
[+] EMBL CD191109 [ CGGGACAAGAAGACAAAGTTAGTGTAGCTGAATATTTATTAAGTTCAGGTGCGTCCATTAATACGAAAACATTGAAAGCTGGATTTACACGGGTACATTCATCTGCTTATAGGGGACAGCTCGCCTCTGTTCGTTTACTTCTATCA ]
[+] EMBL CD191098 [ CTGCTTATAGGGGACAGCTCGCCTCTGTTCGTTTACTTCTATCATGTGTCCCTGAACATGAACTTCAGCAAGTTATAAACAGTCGCACTCATATGGGTTCAACTCCACTGCATTTGGCAGCACAACAAGGTCATCTACAAGTAGCTCTAAAACTGATTCAAATGGGAGCTGATCCAAACATTTGTAATAAGCAAGGATGGACAGCAGCAAAATTAGCCCATAAGCAACATTACTTGAACTTGTTCGAATTGTTGCAATCGATT ]
[-] EMBL CD067210 [ CATAAGCAACATTACTTGAACTTGTTCGAATTGTTGCAATCGATTACAACTAATGGCGGTGATGGGAGTTTACCTAGTTCAAATGGAATAGATGATAATGTAAATCTAATCAATGGTGTAATGCCCTTAGAAAAAGCGGAATATATGACCGATCATATGATTTCAGATAGTGAAGATGAAGCCGAACTTTTATCTACACCAGCAATGTTTCGATATCCCAAACAATGTAAAGGAAATTTTGATGAAACAGGAGACAACGATATGACATCAATTCCAAGTACACCAACTATGGGTAATAAACTCATATCAGTCCGCCCAACAAC ]
[+] EMBL CD185899 [ CGAACTTTTATCTACACCAGCAATGTTTCGATATCCCAAACAATGTAAAGGAAATTTTGATGAAACAGGAGACAACGATATGACATCAATTCCAAGTACACCAACTATGGATAATAAACTCATATCAGTCCGCCCAACAACACTGCATATTCCTGAATATCATTTAACTGCCTTAGGGGGTGAAACTCTTTGCTCCAGTCTTCATGAAAGTATGACCGAGGAACGCGTGAAGCTGATGCTCAATGGAAAAGAGGATCCAGTTACAACTTCACAACAGCCAGTTCAGATGGCTATTACTGCACCGTCACCTGCTGCTCTATCAGAATGGGATTTTGATGTAGATAATGTTCATTCGACGGAGAATTTAGTTGAGTCGGGGTTTCTTATCTCTTTTATCATCGATGCTCGAGGTGGTCTAGTTGAAGCTCAAAGACGACCTGGTTTACGATTTATTGTACCGCCTAATGCACCTTCTGGACCACTACGTATAATTTGCC]
[+] EMBL CD185740 [ CAGTTACAACTTCACAACAGCCAGTTCAGATGGCTATTACTGCACCGTCACCTGCTGCTCTATCAGAATGGGATTTTGATGTAAATAATGTTCATTCGACGAAAAATTTAGTTAAGTCGGGGTTTCTTATCTCTTTTATCATCGATGCTCGAGGTGGTCTAGTTGAAGCTCAAAGACGACCTGGTTTACGATTTATTGTACCGCCTAATGCACCTTCTGGACCACTACGTATAATTTGCC]
consensusID : consensus_9689#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 130 fasta sequence
[CAACCAATGTAAAGGAAATTTTGATGAAACAGGAGCCACCGATATGACATCAATTCCAAGTACACCAGCTATGGATAATAAACTCAAATCAGTCCGCGCAACAACATTGCATATTCTTAATTCCCCCCTG]
[-] EMBL CD066604 [CAACCAATGTAAAGGAAATTTTGATGAAACAGGAGCCACCGATATGACATCAATTCCAAGTACACCAGCTATGGATAATAAACTCAAATCAGTCCGCGCAACAACATTGCATATTCTTAATTCCCCCCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9689#0 GGTTACCAAGCAAATTTAGATTGCCGTACAAGAGATAATCAAACACCCTTACATGTCACT 60
consensus_9689#1 ------------------------------------------------------------
consensus_9689#0 GTCCGTACAAATTATCTGCCTATTGTTGAACTGTTATTGAATGCTGGTTCCGATCCTAAT 120
consensus_9689#1 ------------------------------------------------------------
consensus_9689#0 ATAATGACAAAAGATAATTATACACCATTACATGTAGCTATTAAAGAAGACTCAGATGAT 180
consensus_9689#1 ------------------------------------------------------------
consensus_9689#0 ATTGTTAGAATATTAATTGAGCACGATGCTAATCCGGAGGTTAAAACGAAGAAAGGATTT 240
consensus_9689#1 ------------------------------------------------------------
consensus_9689#0 ACACCCTTACACTTAGCAGCAAAATATGGTTCATGCAAAACAGCCCACTTGTTAATGGAA 300
consensus_9689#1 ------------------------------------------------------------
consensus_9689#0 AGAACAAAGTCTGATCCAAACGCAACTGGTCCCAATGGCTTCACGCCTGTACACGTGGCC 360
consensus_9689#1 ------------------------------------------------------------
consensus_9689#0 ACATTCTACAATAATAACAAAATGCTGGATAAGTTGATAGAATTTGGAGGTGATGTCAAT 420
consensus_9689#1 ------------------------------------------------------------
consensus_9689#0 CGACCTGTCAAGAATGGCTTTACGCCACTTCATTTAGCAACTAAACGAAATCATCTGGAT 480
consensus_9689#1 ------------------------------------------------------------
consensus_9689#0 TCAATCCACTTATTAATATCCAAAGGAGCCATAACTGATAAAGGTTCAAGGAACGGTTAT 540
consensus_9689#1 ------------------------------------------------------------
consensus_9689#0 ACACCACTTCATTTAGCCTCACAAGATGGTCAAATCGAAATAGTTAAAGTTCTCGCTGAA 600
consensus_9689#1 ------------------------------------------------------------
consensus_9689#0 AAATACAAAGCTCAAGTGGATGCTGCAGCCAAAGACGGTTTAACACCACTACACTTGGCG 660
consensus_9689#1 ------------------------------------------------------------
consensus_9689#0 GTACAAGAAGACAAAGTTAGTGTAGCTGAATATTTATTAAGTTCAGGTGCGTCCATTAAT 720
consensus_9689#1 ------------------------------------------------------------
consensus_9689#0 ACGAAAACATTGAAAGCTGGATTTACACCGCTACATTCATCTGCTTATAGGGGACAGCTC 780
consensus_9689#1 ------------------------------------------------------------
consensus_9689#0 GCCTCTGTTCGTTTACTTCTATCATGTGTCCCTGAACATGAACTTCAGCAAGTTATAAAC 840
consensus_9689#1 ------------------------------------------------------------
consensus_9689#0 AGTCGCACTCATATGGGTTCAACTCCACTGCATTTGGCAGCACAACAAGGTCATCTACAA 900
consensus_9689#1 ------------------------------------------------------------
consensus_9689#0 GTAGCTCTAAAACTGATTCAAATGGGAGCTGATCCAAACATTTGTAATAAGCAAGGATGG 960
consensus_9689#1 ------------------------------------------------------------
consensus_9689#0 ACAGCAGCAAAATTAGCTCATAAGCAACATTACTTGAACTTGTTCGAATTGTTGCAATCG 1020
consensus_9689#1 ------------------------------------------------------------
consensus_9689#0 ATTACAACTAATGGCGGTGATGGGAGTTTACCTAGTTCAAATGGAATAGATGATAATGTA 1080
consensus_9689#1 ------------------------------------------------------------
consensus_9689#0 AATCTAATCAATGGTGTAATGCCCTTAGAAAAAGCGGAATATATGACCGATCATATGATT 1140
consensus_9689#1 ------------------------------------------------------------
consensus_9689#0 TCAGATAGTGAAGATGAAGCCGAACTTTTATCTACACCAGCAATGTTTCGATATCCCAAA 1200
consensus_9689#1 --------------------------------------------------------CAAC 4
***
consensus_9689#0 CAATGTAAAGGAAATTTTGATGAAACAGGAGACAACGATATGACATCAATTCCAAGTACA 1260
consensus_9689#1 CAATGTAAAGGAAATTTTGATGAAACAGGAGCCACCGATATGACATCAATTCCAAGTACA 64
******************************* ** *************************
consensus_9689#0 CCAACTATGGGTAATAAACTCATATCAGTCCGCCCAACAACACTGCATATTCCTGAATAT 1320
consensus_9689#1 CCAGCTATGGATAATAAACTCAAATCAGTCCGCGCAACAACATTGCATATTCTTAATTCC 124
*** ****** *********** ********** ******** ********* * * *
consensus_9689#0 CATTTAACTGCCTTAGGGGGTGAAACTCTTTGCTCCAGTCTTCATGAAAGTATGACCGAG 1380
consensus_9689#1 CCCCTG------------------------------------------------------ 130
* *
consensus_9689#0 GAACGCGTGAAGCTGATGCTCAATGGAAAAGAGGATCCAGTTACAACTTCACAACAGCCA 1440
consensus_9689#1 ------------------------------------------------------------
consensus_9689#0 GTTCAGATGGCTATTACTGCACCGTCACCTGCTGCTCTATCAGAATGGGATTTTGATGTA 1500
consensus_9689#1 ------------------------------------------------------------
consensus_9689#0 GATAATGTTCATTCGACGGAGAATTTAGTTGAGTCGGGGTTTCTTATCTCTTTTATCATC 1560
consensus_9689#1 ------------------------------------------------------------
consensus_9689#0 GATGCTCGAGGTGGTCTAGTTGAAGCTCAAAGACGACCTGGTTTACGATTTATTGTACCG 1620
consensus_9689#1 ------------------------------------------------------------
consensus_9689#0 CCTAATGCACCTTCTGGACCACTACGTATAATTTGCC 1657
consensus_9689#1 -------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||