|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9690#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 629 fasta sequence [AACTGACGTAACAAGTATGGAATGCATTCTGGAATCTGGAATGCTCAGGATTGGCAACGTTCACTAGATTGGAGATTCGTGATGACGGTATGACGCAAATATATGGAGAAGACCAACACGGATGTATGGACGATCTTATTCCAGTCAATTCTAATTCTGAATTTCACGTTTCCCATCACAAGAAATCAATCTCTGTTAGGTGGTCTGTTCAGCTAGACGTTGGTGCTGCACGGTCGAATTGTAAGTTTCCATTTTCCAATGTGACAGTCTGATTCCAGTTAGAACTCAGTTGTCAGTTCAACCTGCACATCAAATCCTGTTTTTCTATTGAATCATAAATACACCTCTGCTTTTCAGATCAAGTCGCTGTTACAACGAACGACCAGGTTACTATTGTGAGAGCATGTGAATTTGAATTGAGGAAGTGAAATCAATACTTCAGATTGATGAACATTTCTTCATTCAATCTCATTCAATGCTCAACGGAAGGAACACATGCTCAAACAATCACATCCATAATCGCACTCAACAATTATAGATAGATTTATTGAGGTAACTGATACGTTTCCTACTGCAGTCAGGAAGATTTTTGTGGGACAAATGTATCAAATGAATCAATTTCTGCTCAA] [+] EMBL CD067901 [AACTGACGTAACAAGTATGGAATGCATTCTGGAATCTGGAATGCTCAGGATTGGCAACGTTCACTAGATTGGAGATTCGTGATGACGGTATGACGCAAATATATGGAGAAGACCAACACGGATGTATGGACGATCTTATTCCAGTCAATTCTAATTCTGAATTTCACGTTTCCCATCACAAGAAATCAATCTCTGTTAGGTGGTCTGTTCAGCTAGACGTTGGTGCTGCACGGTCGAATTGTAAGTTTCCATTTTCCAATGTGACAGTCTGATTCCAGTTAGAACTCAGTTGTCAGTTCAACCTGCACATCAAATCCTGTTTTTCTATTGAATCATAAATACACCTCTGCTTTTCAGATCAAGTCGCTGTTACAACGAACGACCAGGTTACTATTGTGAGAGCATGTGAATTTGAATTGAGGAAGTGAAATCAATACTTCAGATTGATGAACATTTCTTCATTCAATCTCATTCAATGCTCAACGGAAGGAACACATGCTCAAACAATCACATCCATAATCGCACTCAACAATTATAGATAGATTTATTGAGGTAACTGATACGTTTCCTACTGCAGTCAGGAAGATTTTTGTGGGACAAATGTATCAAATGAATCAATTTCTGCTCAA] [-] EMBL CD163809 [ cgactGACGATCTTATTCCAGTCAATTCTAATTCTGAATTTCACGTTTCCCATCACAAGAAATCAATCTCTGTTAGGTGGTCTGTTCAGCTAGACGTTGGTGCTGCACGGTCGAATTGTAAGTTTCCATTTTCCAATGTGACAGTCTGATTCCAGTTAGAACTCAGTTGTCAGTTCAACCTGCACATCAAATCCTGTTTTTCTATTGAATCATAAATACACTTCTGCTTTTCAGATCAAGTCGCTGTTACAACGAACGACCAGGTTACTATTGTGAGAGCATGTGAATTTGAATTGAGGAAGTGAAATCAATACTTCAGATTGATGAACATTTCTTCATTCAATCCCATTCAATGCTCAACGGAAGGAACACATGCTCAAACAATCACATCTATAATCGCTCTCAACAATTATAGATAGATTTATTGAGGTAACTGATACGTTT ] consensusID : consensus_9690#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 547 fasta sequence [GCACTTCAGTATGATGAAGATTTCTTCATTCAATCTCGTTCACTTCTTAACGGTGTATTGAAGGAACATATGCTTGAAGAATCATATCCGTAATCGCACTCAACAATTATAGATATATTTAACGAGGTAACTGTTACGTTTCCTACTGCAATCAGGAAGTGTTTTGTAGGATAAATGTTTCAAATGATCAAATGTCTGATAATGACGATGCTTATATTTGAGATTCATTAGTTGCTAATGAAGTCGTTAGTGAATTTGAGAAAAATATTTCATATGAATGAA-ATAGTGGTGAAATACGTGATGTTGCTCGTTTCCACAATGCTTATGATTGCAGAGCAAGCCTTGGTCAATATGAAGCACAAGTTCTCAATCTGTTCAAATCTAACGATAGTTCTGATGGTTCCAATTCAAACTTTATTTATACTCACAATCCATCTACTGCTAATCAATGTGAGAAACACGTTTCAAA-CGAGTCGCATCCTGATCACATTTCACATGTTATTGTAGCAGATGTTTGGTGCTTGTCATGCA-TATATATGTCACATAG] [+] EMBL CD192518 [GCACTTCAGTATGATGAAGATTTCTTCATTCAATCTCGTTCACTTCTTAACGGTGTATTGAAGGAACATATGCTTGAAGAATCATATCCGTAATCGCACTCAACAATTATAGATATATTTAACGAGGTAACTGTTACGTTTCCTACTGCAATCAGGAAGTGTTTTGTAGGATAAATGTTTCAAATGATCAAATGTCTGATAATGACGATGCTTATATTTGAGATTCATTAGTTGCTAATGAAGTCGTTAGTGAATTTGAGAAAAATATTTCATATGAATGAA ATAGTGG ] [-] EMBL CD166627 [ ATATATTTAACGAGGTAACTGTTACGTTTCCTACTGCAATCAGGAAGTGTTTTGTAGGATAAATGTTTCAAATGATCAAATGTCTGATAATGACGATGCTTATATTTGAGATTCATTAGTTGCTAATGAAGTCGTTAGTGAATTTGAGAAAAATATTTCATATGAATGAA ATAGTGGTGAAATACGTGATGTTGCACGTTTCCACAATGCTTATGATTGCAGAGCAAGCCTTGGTCAATATGAAGCACAAGTTCTCAATCTGTTCAAATCTAACGATAGTTCTGATGGTTCCAATTCAAACTTTATTTATACTCACAATCCATCTACTGCTAATCAATGTGAGAAACATGTTTCAAAGCGAGTCGCATCCTGATCACATTTCACATGTTATTGTAGCAGATGTTTGGTGCTTGTCATGCA TATATATGTCACATAG] [+] EMBL CD166790 [ aacTATATTTAACGAGGTAACTGTTACGTTTCCTACTGCAATCAGGAAGTGTCTCGTAGGATAAATGTTTCAAATGATCAAATGTCTGATAATGACGATGCTTATATTTGAGATTCATTAGTTGCTAATGAAGTCGTTAGTGAATTTGAGAAAAATATTTCATATGAATGAACATAGTGGTGAAATACGTGATGTTGCTCGTTTCCACAATGCTTATGATTGCAGAGCAAGCCTTGGTCAATATGAAGCACAAGTTCTCAATCTGTTCAAATCTAACGATAGTTCTGATGGTTCCAATTCAAACTTTATTTATACTCACAATCCATCTACTGCTAATCAATGTGAGAAACACGTTTCAAA CGAGTCGCATCCTGATCACATTTCACATGTTATTGTAGCAGATGTTTGGTGC TGTCATGCATTATATAT ] [+] EMBL CD064329 [ ttgcgATACGTGATGTTGCTCGTTTCCACAATGCTTATGATTGCAGAGCAAGCCTTGGTCAATATGAAGCACAAGTTCTCAATCTGTTCAAATCTAACGATAGTTCTGATGGTTCCAATTCAAACTTTATTTATACTCACAATCCATCTACTGCTAATCAATGTGAGAAACACGTTTCACA CGAGTCGCATCCTGATCACATTTCA ] consensusID : consensus_9690#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence [CATGGCTCCCGNGCCGCCATGGTCGGCCGCGGGAAATTCGATTTTGAGGCACACACGAGACAACGGAAGGAACACATGCTCAAACAATCACATCCATAATCGCACTCAACAATTATAGATAGATTTATTGAGGTAACTGATACGTTTCCTACTGCAGTCAGGAAGATTTTTGTGGGACAAATGTATCAAATGAATCAATTTCTGCTCGACTTTGTGATGATGATGTTGATGATATTTGAGATTCATTAGTTGCTAATGAAGTCCTTAGTGAATTGAAGAAAGATATTTCATGTGAAGTAAATTGTGGTGAAATACGTGATGTTGCTCGTTTTCACAATGCTTATGATTGCAGAACAAACCTTGGTCAATATGAAGCACAAGTTCTCAATCTGTTCAAATCTAACGATAGTTCTGAAGGTTCCCAATTCACACTTTATTTATACTCACAATCCATCTACTGCTAATCAATG] [+] EMBL CD164519 [CATGGCTCCCGNGCCGCCATGGTCGGCCGCGGGAAATTCGATTTTGAGGCACACACGAGACAACGGAAGGAACACATGCTCAAACAATCACATCCATAATCGCACTCAACAATTATAGATAGATTTATTGAGGTAACTGATACGTTTCCTACTGCAGTCAGGAAGATTTTTGTGGGACAAATGTATCAAATGAATCAATTTCTGCTCGACTTTGTGATGATGATGTTGATGATATTTGAGATTCATTAGTTGCTAATGAAGTCCTTAGTGAATTGAAGAAAGATATTTCATGTGAAGTAAATTGTGGTGAAATACGTGATGTTGCTCGTTTTCACAATGCTTATGATTGCAGAACAAACCTTGGTCAATATGAAGCACAAGTTCTCAATCTGTTCAAATCTAACGATAGTTCTGAAGGTTCCCAATTCACACTTTATTTATACTCACAATCCATCTACTGCTAATCAATG] consensusID : consensus_9690#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 462 fasta sequence [CGACCTCGGTACCCGATGCTTATATTTGAGAATCATTAGTTGCTAATGAAGTCGTTAGTGAATTTGAGAAAAATATTTCATATGAATGAAATAGTGGTGAAATACGTGATGTTGCTCGTTTCCAAAATGCTTATGATTGCAGAGCAAGCCTTGGTCAATATGAAGCACAAGTTCTCAATCCGTTCAAATCTAACGATAGTTCTGATGGTTCCAATTCAAACTTTATTTATACTCACAATCCATCTACTGCTAATCAATGTGAGAAACATGTTTCAGACGAGTCGCATCCTGATCACATTTCACATGTTATTGTAGCAGATGTTTGGTGCTGTCATGCATTATATATGTCACATAGATACTCCTCTGAATGCTCGAATGAATGAACTGACGTAACAAGTATGGAATGCATTCTGGAATCTGGAATGTTCAGGATTGACAACGTTCACATAGTGGGAAAATTCA] [+] EMBL CD168226 [CGACCTCGGTACCCGATGCTTATATTTGAGAATCATTAGTTGCTAATGAAGTCGTTAGTGAATTTGAGAAAAATATTTCATATGAATGAAATAGTGGTGAAATACGTGATGTTGCTCGTTTCCAAAATGCTTATGATTGCAGAGCAAGCCTTGGTCAATATGAAGCACAAGTTCTCAATCCGTTCAAATCTAACGATAGTTCTGATGGTTCCAATTCAAACTTTATTTATACTCACAATCCATCTACTGCTAATCAATGTGAGAAACATGTTTCAG ] [+] EMBL CD188388 [ CAAACTTTATTTATACTCACAATCCATCTACTGCTAATCAATGTGAGAAACATGTTTCAAACGAGTCGCATCCTGATCACATTTCACATGTTATTGTAGCAGATGTTTGGTGCTGTCATGCATTATATATGTCACATAGATACTCCTCTGAATGCTCGAATGAATGAACTGACGTAACAAGTATGGAATGCATTCTGGAATCTGGAATGTTCAGGATTGACAACGTTCACATAGTGGGAAAATTCA] consensusID : consensus_9690#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 329 fasta sequence [TGGTTGGATTGAATGAACATGAACTATGCTCGAGATGACACACAGTATGTGATTTATGATAATTCCGTGTATTTTGCATATTTGTGTCTACAGGGTCGAATTGTAAGTTTCCATTTTCCAATGTGACAGTCTGATTCCAGTTAGAACTCAGTTGTCAGTTCAACCTGCACATCAAATCCTGTTTTTCTATTGAATCATAAATACACTTCTGCTTTTCAGATCAAGTCGCTGTTACAACGAACGACCAGGTTACTATTGTGAGAGCATGTGAATTTGAATTGAGGAAGTGAAATCAATACTTCAGATTGATGAACATTTCTTCATTCAAT] [-] EMBL CD061449 [TGGTTGGATTGAATGAACATGAACTATGCTCGAGATGACACACAGTATGTGATTTATGATAATTCCGTGTATTTTGCATATTTGTGTCTACAGGGTCGAATTGTAAGTTTCCATTTTCCAATGTGACAGTCTGATTCCAGTTAGAACTCAGTTGTCAGTTCAACCTGCACATCAAATCCTGTTTTTCTATTGAATCATAAATACACTTCTGCTTTTCAGATCAAGTCGCTGTTACAACGAACGACCAGGTTACTATTGTGAGAGCATGTGAATTTGAATTGAGGAAGTGAAATCAATACTTCAGATTGATGAACATTTCTTCATTCAAT] [-] EMBL CD061445 [TGGTTGGATTGAATGAACATGAACTATGCTCGAGATGACACACAGTATGTGATTTATGATAATTCCGTGTATTTTGCATATTTGTGTCTACAGGGTCGAATTGTAAGTTTCCATTTTCCAATGTGACAGTCTGATTCCAGTTAGAACTCAGTTGTCAGTTCAACCTGCACATCAAATCCTGTTTTTCTATTGAATCATAAATACACTTCTGCTTTTCAGATCAAGTCGCTGTTACAACGAACGACCAGGTTACTATTGTGAGAGCATGTGAATTTGAATTGAGGAAGTGAAATCAATACTTCAGATTGATGAACATTTCTTCATTCAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9690#1 --------GCACTTCAGTATGATGAAGATTTCTTCATTCAATCTCGTTCACTTCTTAACG 52
consensus_9690#3 ------------------------------------------------------------
consensus_9690#2 CATGGCTCCCGNGCCGCCATGGTCGGCCGCGGGAAATTCGATTTTG--AGGCACACACGA 58
consensus_9690#0 ------------------------------------------------------------
consensus_9690#4 ------------------------------------------------------------
consensus_9690#1 GTGTATTGAAGGAACATATGCTTGAAGAATCATATCCGTAATCGCACTCAACAATTATAG 112
consensus_9690#3 ------------------------------------------------------------
consensus_9690#2 GACAACGGAAGGAACACATGCTCAAACAATCACATCCATAATCGCACTCAACAATTATAG 118
consensus_9690#0 -------AACTGACGTAACAAGTATGGAATGCATTCTGGAATCTGGAATGCTCAGGATTG 53
consensus_9690#4 ------------------------------------------------------------
consensus_9690#1 ATATATTTAACGAGGTAACTGTTACGTTTCCTACTGCAATCAGGAAGTGTTTTGTAGGAT 172
consensus_9690#3 ------------------------------------------------------------
consensus_9690#2 ATAGATTTATTGAGGTAACTGATACGTTTCCTACTGCAGTCAGGAAGATTTTTGTGGGAC 178
consensus_9690#0 GCAACGTTCACTAGATTGGAGATTCGTGATGACGGTATGACGCAAATATATGGAGAAGAC 113
consensus_9690#4 ------------------------------------------------------------
consensus_9690#1 AAATGTTTCAAATGATCAAATGTCT------------GATAATGACGATGCTTATATTTG 220
consensus_9690#3 -----------------CGACCTC-------------GGTACC--CGATGCTTATATTTG 28
consensus_9690#2 AAATGTATCAAATGAATCAATTTCTGCTCGACTTTGTGATGATGATGTTGATGATATTTG 238
consensus_9690#0 CAACACGGATGTATGGACGATCTTATTCC-AGTCAATTCTAATTCTGAATTTCACGTTTC 172
consensus_9690#4 -----------------TGGTTGGATTG--AATGAACATGAACTATG--CTCGAGATGAC 39
* * *
consensus_9690#1 AGATTCATTAGTTGCTAATGA-AGTCGTTAGTGAATTTGAGAAAAATATTTCATATGAAT 279
consensus_9690#3 AGAATCATTAGTTGCTAATGA-AGTCGTTAGTGAATTTGAGAAAAATATTTCATATGAAT 87
consensus_9690#2 AGATTCATTAGTTGCTAATGA-AGTCCTTAGTGAATTGAAGAAAGATATTTCATGTGAAG 297
consensus_9690#0 CCA-TCACAAGAAATCAATCTCTGTTAGGTGGTCTGTTCAGCTAGACGTTG-GTG-CTGC 229
consensus_9690#4 ACA-CAGTATGTGATTTATGATAATTCCGTG---TATTTTGC---ATATTT-GTGTCTAC 91
* * ** * * * * * ** *
consensus_9690#1 GAAATAGTGGTGAAATACGTGATGTTGCTCGTTTCCACAATGCTTATGATTGCAGAGCAA 339
consensus_9690#3 GAAATAGTGGTGAAATACGTGATGTTGCTCGTTTCCAAAATGCTTATGATTGCAGAGCAA 147
consensus_9690#2 TAAATTGTGGTGAAATACGTGATGTTGCTCGTTTTCACAATGCTTATGATTGCAGAACAA 357
consensus_9690#0 ACGGTCGAATTGTAAGTTTCCATTTTCCAATGTGACAGTCTGATTCCAGTTAGAACTCAG 289
consensus_9690#4 AGGGTCGAATTGTAAGTTTCCATTTTCCAATGTGACAGTCTGATTCCAGTTAGAACTCAG 151
* * ** ** ** ** * * ** ** ** ** * **
consensus_9690#1 GCCTTGGT-CAATATGAAGCACAAGTTCT--CAATCTGTTCAAATCTAACGATAGTTCTG 396
consensus_9690#3 GCCTTGGT-CAATATGAAGCACAAGTTCT--CAATCCGTTCAAATCTAACGATAGTTCTG 204
consensus_9690#2 ACCTTGGT-CAATATGAAGCACAAGTTCT--CAATCTGTTCAAATCTAACGATAGTTCTG 414
consensus_9690#0 TTGTCAGTTCAACCTGCACATCAAATCCTGTTTTTCTATTGAATCATAAATACACCTCTG 349
consensus_9690#4 TTGTCAGTTCAACCTGCACATCAAATCCTGTTTTTCTATTGAATCATAAATACACTTCTG 211
* ** *** ** * *** * ** ** ** ** *** * * ****
consensus_9690#1 ATGGTTCC-AATTCAAACTTTATTTATACTCACAATCCATCTACTGCTAATCAATGTGAG 455
consensus_9690#3 ATGGTTCC-AATTCAAACTTTATTTATACTCACAATCCATCTACTGCTAATCAATGTGAG 263
consensus_9690#2 AAGGTTCCCAATTCACACTTTATTTATACTCACAATCCATCTACTGCTAATCAATG---- 470
consensus_9690#0 CT--TTTCAGATCAAGTCGCTGTTACAACGAACGACCAGGTTACTATTGTGAGAGCATGT 407
consensus_9690#4 CT--TTTCAGATCAAGTCGCTGTTACAACGAACGACCAGGTTACTATTGTGAGAGCATGT 269
** * ** * * * ** ** ** * * **** * *
consensus_9690#1 AAACACGTTTCAAACGAGTCGCATCCTGATCACATTTCACATGTTATTGTAGCAGATGTT 515
consensus_9690#3 AAACATGTTTCAGACGAGTCGCATCCTGATCACATTTCACATGTTATTGTAGCAGATGTT 323
consensus_9690#2 ------------------------------------------------------------
consensus_9690#0 GAATTTGAATTGAGGAAGTGAAATCAATACTTCAGATTGATGAACATTTCTTCATTCAAT 467
consensus_9690#4 GAATTTGAATTGAGGAAGTGAAATCAATACTTCAGATTGATGAACATTTCTTCATTCAAT 329
consensus_9690#1 TGGTGCTTGTCATGCAT-ATATATGTCACATAG--------------------------- 547
consensus_9690#3 TGGTGCT-GTCATGCATTATATATGTCACATAGATACTCCTCTGAATGCTCGAATGAATG 382
consensus_9690#2 ------------------------------------------------------------
consensus_9690#0 CTCATTCAATGCTCAACGGAAGGAACACATGCTCAAACAATCACATCCATAATCGCACTC 527
consensus_9690#4 ------------------------------------------------------------
consensus_9690#1 ------------------------------------------------------------
consensus_9690#3 AACTGACGTAACAAGTATGGAATGCATTCTGGAATCTGGAATGTTCAGGATTGACAACGT 442
consensus_9690#2 ------------------------------------------------------------
consensus_9690#0 AACAATTATAGATAGATTTATTGAGGTAACTGATACGTTTCCTACTGCAGTCAGGAAGAT 587
consensus_9690#4 ------------------------------------------------------------
consensus_9690#1 ------------------------------------------
consensus_9690#3 TCACATAGTGGGAAAATTCA---------------------- 462
consensus_9690#2 ------------------------------------------
consensus_9690#0 TTTTGTGGGACAAATGTATCAAATGAATCAATTTCTGCTCAA 629
consensus_9690#4 ------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||