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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9695#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1071 fasta sequence
[ACATAACCCTGTATAGCTGTTGATTACGGTTGGAAAGGACTTATTGCTCTTGGCAGTTTCACCAACATACTTATAATTGACCCTTGTTTCAGTAAATCTTTGCAGTCGCTTCAGGGTCACCGCAATAACATAGTAAATGTTCTGTGGGCTCCTGAAAATCACTATCATGATGATAAAAACCCTTTTCAATTAAAACTTGCTAGTGTTGACGCGTCTGGAGTAATAATTATTTGGGATGCTACTACATCATCTGCAACCTCAGAGTTCCGTGAGCCAGATTCACTCGTCTGGGATATATTATGGCTACCAAATCAGTGGGTTTCACGTGATTTGTTGGCTGTTCTCCACTCTCACAACAGATTCATTATCTGGAATACACAAACTCAAACAAGATTGTGGAAACACTCTTTTGGGGACGATGTGGTTTCTTTTTCTTTGGATATATTCTCTAATTCAAAGATGATTTTTTGCTCAAAGGAATATTTCATTGTGGAGAATTTCAACGTCACTTCGTGTGCTTTTGG-AAAGGCAGGGAACTAAACATTTCTGAGTCTGGTAGCAACAAGTGTTNTATTAATGAAATANACTCACGTGGAACAACATCAGGAGAAACGCCAGTGAAACTATCGTCTAGTGAACTAAAAGTCAGTCCGGGGAACTCTGATAGGACATGTGATTCTTCGAGTGATAATTCCCGAATAACATCTATTAGAACATGTTTGCAGGTTACTTACCATCGATATCACAAGGACTGTGCGTTGTTTGTTTTTAGGAGGGAGATTATTATTGTGAATCTGGGACTGGTCCGCCCACTTCATGTTGTTTCTTTAGATCCTTCTTGGCCTTCTTTCTCACGTACGCCCAAAACAAGTACATCATGTTGATTTTTCTGTCAACCAAATGAATGAGTTGAATATCATCGTAGCTTCAATCGATGGGCGTTTCCAGTTTTGGCAACTGCGAGCTGTTCGAGACTCAACTTTCTGTGATGAGGTGAAACCAATTTGGAGCCTTTCGGACCTGCTACCCCATGCACCTGTTGTAGATAAGGCTCCAATAAAGTTGTATCTC]
[+] EMBL CD178265 [ACATAACCCTGTATAGCTGTTGATTACGGTTGGAAAGGACTTATTGCTCTTGGCAGTTTCACCAACATACTTATAATTGACCCTTGTTTCAGTAAATCTTTGCAGTCGCTTCAGGGTCACCGCAATAACATAGTAAATGTTCTGTGGGCTCCTGAAAATCACTATCATGATGATAAAAACCCTTTTCAATTAAAACTTGCTAGTGTTGACGCGTCTGGAGTAATAATTATTTGGGATGCTACTACATCATCTGCAACCTCAGAGTTCCGTGAGCCAGATTCACTCGTCTGGGATAT ]
[+] EMBL CD153391 [ GGAAAGGACTTATTGCTCTTGGCAGTTTCACCAACATACTTATAATTGACCCTTGTTTCAGTAAATCTTTGCAGTCGCTTCAGGGTCACCGCAATAACATAGTAAATGTTCTGTGGGCTCCTGAAAATCACTATCATGATGATAAAAACCCTATTCAATTAAAACTTGCTAGTGTTGACGCGTCTGGAGTAATAATTATTTGGGATGCTACTACATCATCTGCAACCTCAGAGTTCCGTGAGCCAGATTCACTCGTCTTGGATATATTATGGCTACCAAATCAGTGGGTTTCACGTGATTTGTTGGCTGTTCTCCACTCTCACAACAGATTCATTATCTGGAATACACAAACTCAAACAAGATTGTGGAAACACTCTTTTGGGGACGATGTGGTTTCTTTTTCTTTGGATATATTCTCTAATTCAAAGATGATTTTTTGCTCAAAGGAATATTTCATTGTGGAGAATTTCAACGTCACTTCGTGTGCTTTTGG AAAGGCAGGGAACTAAACATTTCTGAGTCTGGTAGCAACAAGTGTTNTATTAATGAAATANAC ]
[+] EMBL CD178640 [ GTGGTTTCTTTTTCTTTGGATATATTCTCTAATTCAAAGATGATTTTTTGCTCAAAGGAATATTTCATTGTGGAGAATTTCAACGTCACTTCGTGTGCTTTTGGAAAAGGCAGGAAACTAAACATTTCTGAGTCTGGTAGCAACAAGTGTTTTATTAATGAAATAAACTCACGTGGAACAACATCAGGAGAAACGCCAGTGAAACTATCGTCTAGTGAACTAAAAGTCAGTCCGGGGAACTCTGATAGGACATGTGATTCTTCGAGTGATAATTCCCGAATAACATCTATTAGAACATGTTTGCAGGTTACTTACCATCGATATCACAAGGACTGTGCGTTGTTTGTTTTTAGGAGGGAGATTATTATTGTGAATCTGGGACTGGTCCGCCCACTTCATGTTGTTTCTTTAGA ]
[-] EMBL CD097650 [ TCGTCTAGTGAACTAAAAGTCAGTCCGGGGAACTCTGATAGGACATGTGATTCTTCGAGTGATAATTCCCGAATAACATCTATTAGAACATGTTTGCAGGTTACTTACCATCGATATCACAAGGACTGTGCGTTGTTTGTTTTTAGGAGGGAGATTATTATTGTGAATCTGGGACTGGTCCGCCCACTTCATGTTGTTTCTTTAGATCCTTCTTGGCCTTCTTTCTCACGTACGCCCAAAACAAGTACATCATGTTGATTTTTCTGTCAACCAAATGAATGAGTTGAATATCATCGTAGCTTCAATCGATGGGCGTTTCCAGTTTTGGCAACTGCGAGCTGTTCGAGACTCAACTTTCTGTGATGAGGTGAAACCAATTTGGAGCCTTTCGGACCTGCTACCCCATGCACCTGTTGTAGATAAGGCTCCAATAAAGTTGTATCTC]
consensusID : consensus_9695#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence
[CCTCTCATTTACTGCGAAAACCTACTAAAGAATCTTCTGATCTCCACTCTGATAACAGCTGCACTTATGTTCTTGTTGCAACTGCTGCTTCTTCTAGACGCCCTAAACAAGTACATCATGTTGATTTTTCTGTCAACCAAATGAATGAGTTGAATATCGTCGTAGCTTCAATCGATGGGCGTTTCCAGTTTTGGCAACTGCGAGCTGTTCGAGACTCAACTTTCTGTGATGAGGTGAAACCAATTTGGAGCCTTTCGGACCTGCTACCCCATGCACCTGTTGTAGATAAGGCTCCAATAAAGTTGTATCTCGAATTAAATGGCTTATACTCTCCAAATAGACCAGAACCAACACTGTGTCGCGTATGTCCACCAAATCTGATGGGACCTTCAATGATAGATTCGATTCGTGGTCCATTAGTGGCTGTTGGAAATAATCGTGGTGATATTCAGATTCTAGGGAT]
[-] EMBL CD060191 [CCTCTCATTTACTGCGAAAACCTACTAAAGAATCTTCTGATCTCCACTCTGATAACAGCTGCACTTATGTTCTTGTTGCAACTGCTGCTTCTTCTAGACGCCCTAAACAAGTACATCATGTTGATTTTTCTGTCAACCAAATGAATGAGTTGAATATCGTCGTAGCTTCAATCGATGGGCGTTTCCAGTTTTGGCAACTGCGAGCTGTTCGAGACTCAACTTTCTGTGATGAGGTGAAACCAATTTGGAGCCTTTCGGACCTGCTACCCCATGCACCTGTTGTAGATAAGGCTCCAATAAAGTTGTATCTCGAATTAAATGGCTTATACTCTCCAAATAGACCAGAACCAACACTGTGTCGCGTATGTCCACCAAATCTGATGGGACCTTCAATGATAGATTCGATTCGTGGTCCATTAGTGGCTGTTGGAAATAATCGTGGTGATATTCAGATTCTAGGGAT]
consensusID : consensus_9695#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 440 fasta sequence
[AATTCGATTGGGGAAAGCGACATCCAAAGATGATTTTTTGCTCAAAGGAATATTTCATTGTGGAGAATTTCAACGTCACTTCGTGTGCTTTTGGAAAAGGCAGGAAACTAAACATTTCTGAGTCTGGTAGCAACAAGTGTTTTATTAATGAAATAAACTCACGTGGAACAACATCAGGAGAAACGCCAGTGAAACTATCGTCTAGTGAACTAAAAGTCAGTCCGGGGAACTCTGATAGGACATGTGATTCTTCGAGTGATAATTCCCGAATAACATCTATTAGAACATGTTTGCAGGTTACTTACCATCGATATCACAAGGACTGTGCGTTGTTTGTTTTTAGGAGGGAGATTATTATTGTGAATCTGGGACTGGTCCGCCCACTTCATGTTGTTTCTTTAGATCCTTCTTGGCCTTCTTTCTCACGTGTTTATTCTTGC]
[-] EMBL CD111246 [AATTCGATTGGGGAAAGCGACATCCAAAGATGATTTTTTGCTCAAAGGAATATTTCATTGTGGAGAATTTCAACGTCACTTCGTGTGCTTTTGGA ]
[+] EMBL CD118988 [ TTTTTTGCTCAAAGGAATATTTCATTGTGGAGAATTTCAACGTCACTTCGTGTGCTTTTGGAAAAGGCAGGAAACTAAACATTTCTGAGTCTGGTAGCAACAAGTGTTTTATTAATGAAATAAACTCACGTGGAACAACATCAGGAGAAACGCCAGTGAAACTATCGTCTAGTGAACTAAAAGTCAGTCCGGGGAACTCTGATAGGACATGTGATTCTTCGAGTGATAATTCCCGAATAACATCTATTAGAACATGTTTGCAGGTTACTTACCATCGATATCACAAGGACTGTGCGTTGTTTGTTTTTAGGAGGGAGATTATTATTGTGAATCTGGGACTGGTCCGCCCACTTCATGTTGTTTCTTTAGATCCTTCTTGGCCTTCTTTCTCACGTGTTTATTCTTG ]
[-] EMBL CD192046 [ CCAGTGAAACTATCGTCTAGTGAACTAAAAGTCAGTCCGGGGAACTCTGATAGGACATGTGATTCTTCGAGTGATAATTCCCGAATAACATCTATTAGAACATGTTTGCAGGTTACTTACCATCGATATCACAAGGACTGTGCGTTGTTTGTTTTTAGGAGGGAGATTATTATTGTGAATCTGGGACTGGTCCGCCCACTTCATGTTGTTTCTTTAGATCCTTCTTGGCCTTCTTTCTCACGTGTTTATTCTTGC]
[-] EMBL CD192140 [ CCAGTGAAACTATCGTCTAGTGAACTAAAAGTCAGTCCGGGGAACTCTGATAGGACATGTGATTCTTCGAGTGATAATTCCCGAATAACATCTATTAGAACATGTTTGCAGGTTACTTACCATCGATATCACAAGGACTGTGCGTTGTTTGTTTTTAGGAGGGAGATTATTATTGTGAATCTGGGACTGGTCCGCCCACTTCATGTTGTTTCTTTAGATCCTTCTTGGCCTTCTTTCTCACGTGTTTATTCTTGC]
consensusID : consensus_9695#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence
[GTTACTTACCATCGATATCACAAGGACTGTGCGTTGTTTGTTTTAGGAGGGAGATTATTATTGTGAATCTGGGACTGGTCCGCCCACTTCATGTTGTTTCTTTAGATCCTTCTTGGCCTTCTTTCTCACGTAAGTGGTAATTTTGATCGCTGAAAGAATCTGGGGTGGCTTTGCGTAATCCATTTTTTAAAGAAAACAACGCACCAATACATTATTTTATTGGCTGTTCATCATGCTTATCACTATAGAGACATATATTCAATACATGATGAAAATGTATGAATACGTATTTACCAGATTTCTGTCTGGATGCATAAGAGCAAAATTTCGTTTTCCGAGAGGATTTGACGTGGAAAGCATAGCTAGAGACTGCTAGAATAAGGAATATGTGTAGTTATATTTATAAGCATACTTCTGATTTGCAGGTTTATTCTTG]
[+] EMBL CD118951 [GTTACTTACCATCGATATCACAAGGACTGTGCGTTGTTTGTTTTAGGAGGGAGATTATTATTGTGAATCTGGGACTGGTCCGCCCACTTCATGTTGTTTCTTTAGATCCTTCTTGGCCTTCTTTCTCACGTAAGTGGTAATTTTGATCGCTGAAAGAATCTGGGGTGGCTTTGCGTAATCCATTTTTTAAAGAAAACAACGCACCAATACATTATTTTATTGGCTGTTCATCATGCTTATCACTATAGAGACATATATTCAATACATGATGAAAATGTATGAATACGTATTTACCAGATTTCTGTCTGGATGCATAAGAGCAAAATTTCGTTTTCCGAGAGGATTTGACGTGGAAAGCATAGCTAGAGACTGCTAGAATAAGGAATATGTGTAGTTATATTTATAAGCATACTTCTGATTTGCAGGTTTATTCTTG]
consensusID : consensus_9695#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 176 fasta sequence
[GCTGTTGATTACGGTTGGAAAGGACTTATTGCTCTTGGCAGTTTCACCAACATACTTATAATTGACCCTTGTTTCAGTAAAGTAACAGATTTTAATGGTTTTCCTAACCTAATTCTAGTCTTTGCAGTCGCTTCAGGGTCACCGCAATAACATAGTAAATGTTCTGTGGGCTCCTG]
[+] EMBL CD066388 [GCTGTTGATTACGGTTGGAAAGGACTTATTGCTCTTGGCAGTTTCACCAACATACTTATAATTGACCCTTGTTTCAGTAAAGTAACAGATTTTAATGGTTTTCCTAACCTAATTCTAGTCTTTGCAGTCGCTTCAGGGTCACCGCAATAACATAGTAAATGTTCTGTGGGCTCCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9695#0 ACATAACCCTGTATAGCTGTTGATTACGGTTGGAAAGGACTTATTGCTCTTGGCAGTTTC 60
consensus_9695#2 ------------------------------------------------------------
consensus_9695#4 ------------------------------------------------------------
consensus_9695#3 ------------------------------------------------------------
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 ACCAACATACTTATAATTGACCCTTGTTTCAGTAAATCTTTGCAGTCGCTTCAGGGTCAC 120
consensus_9695#2 ------------------------------------------------------------
consensus_9695#4 ------------------------------------------------------------
consensus_9695#3 ------------------------------------------------------------
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 CGCAATAACATAGTAAATGTTCTGTGGGCTCCTGAAAATCACTATCATGATGATAAAAAC 180
consensus_9695#2 ------------------------------------------------------------
consensus_9695#4 ------------------------------------------------------------
consensus_9695#3 ------------------------------------------------------------
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 CCTTTTCAATTAAAACTTGCTAGTGTTGACGCGTCTGGAGTAATAATTATTTGGGATGCT 240
consensus_9695#2 ------------------------------------------------------------
consensus_9695#4 ------------------------------------------------------------
consensus_9695#3 ------------------------------------------------------------
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 ACTACATCATCTGCAACCTCAGAGTTCCGTGAGCCAGATTCACTCGTCTGGGATATATTA 300
consensus_9695#2 ------------------------------------------------------------
consensus_9695#4 ------------------------------------------------------------
consensus_9695#3 ------------------------------------------------------------
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 TGGCTACCAAATCAGTGGGTTTCACGTGATTTGTTGGCTGTTCTCCACTCTCACAACAGA 360
consensus_9695#2 ------------------------------------------------------------
consensus_9695#4 ------------------------------------------------------------
consensus_9695#3 ------------------------------------------------------------
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 TTCATTATCTGGAATACACAAACTCAAACAAGATTGTGGAAACACTCTTTTGGGGACGAT 420
consensus_9695#2 ------------------------------------------------------------
consensus_9695#4 ------------------------------------------------------------
consensus_9695#3 ------------------------------------------------------------
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 GTGGTTTCTTTTTCTTTGGATATATTCTCTAATTCAAAGATGATTTTTTGCTCAAAGGAA 480
consensus_9695#2 --------AATTCGATTGGGGAAAGCGAC--ATCCAAAGATGATTTTTTGCTCAAAGGAA 50
consensus_9695#4 ------------------------------------------------------------
consensus_9695#3 -------GTTACTTACCATCGATATCACAAGGACTGTGCGTTGTTTGTTTTAGGAGGGAG 53
consensus_9695#1 ----CCTCTCATTTACTGCGAAAACCTACTAAAGAATCTTCTGATCTCCACTCTGATAAC 56
consensus_9695#0 TATTTCATTGTGGAGAATTTCAACGTCACTTCGTGTGCTTTTGGAAA-GGCAGGGAACTA 539
consensus_9695#2 TATTTCATTGTGGAGAATTTCAACGTCACTTCGTGTGCTTTTGGAAAAGGCAGGAAACTA 110
consensus_9695#4 ------------------------------------GCTGTTGATTACGGTTGGAAAGGA 24
consensus_9695#3 ATTATTATTGTGAATCTGGGACTGGTCCGCCCACTTCATGTTGTTTC--TTTAGATCCTT 111
consensus_9695#1 AGCTGCACTTATGTTCTTGTTGCAACTGCTGCTTCTTCTAGACGCCCTAAACAAGTACAT 116
*
consensus_9695#0 AACATTTCTGAGTCTGGTA--GCAACAAGTGTTNT-ATTAATGAAATANACTCACGTGGA 596
consensus_9695#2 AACATTTCTGAGTCTGGTA--GCAACAAGTGTTTT-ATTAATGAAATAAACTCACGTGGA 167
consensus_9695#4 CTTATTGCTCTTGGCAGTT--TCACCAACATACTT-ATAATTGACCCTTGTTTCAGTAAA 81
consensus_9695#3 CTTGGCCTTCTTTCTCACG--TAAGTGGTAATTTTGATCGCTGAAAGAATCTGGGGTGGC 169
consensus_9695#1 CATGTTGATTTTTCTGTCAACCAAATGAATGAGTTGAATATCG-TCGTAGCTTCAATCGA 175
* * * * * * *
consensus_9695#0 ACAACATCAGGAGAAACGCCAGTGAAACTATCGTCTAGTG----AACTAAAAGTCAGTCC 652
consensus_9695#2 ACAACATCAGGAGAAACGCCAGTGAAACTATCGTCTAGTG----AACTAAAAGTCAGTCC 223
consensus_9695#4 GTAACAG-ATTTTAATGGTTTTCCTAACCTAATTCTAGT------CTTTGCAGTCGCTTC 134
consensus_9695#3 TTTGCGTAATCCATTTTTTAAAGAAAACAACGCACCAATACATTATTTTATTGGCTGTTC 229
consensus_9695#1 TGGGCGTTTCCAGTTTTGGCAACTGCGAGCTGTTCGAGACTCAACTTTCTGTGATGAGGT 235
* * * * *
consensus_9695#0 GGGGA-ACTCTGA----TAGGACATGTGATTCTTCGAGTGATAATTCCCGAATAACATCT 707
consensus_9695#2 GGGGA-ACTCTGA----TAGGACATGTGATTCTTCGAGTGATAATTCCCGAATAACATCT 278
consensus_9695#4 AGGGTCACCGCAA----TAACATA-GTAAATGTTC---TGTGGGCTCCTG---------- 176
consensus_9695#3 ATCATGCTTATCA----CTATAGAGACATATATTC-------AATACATGATGAAAATGT 278
consensus_9695#1 GAAACCAATTTGGAGCCTTTCGGACCTGCTACCCCATGCACCTGTTGTAGATAAGGCTCC 295
* * *
consensus_9695#0 ATTAGAACATGTTTGCAGGTTACTTACCATCGATATCACAAGGACTGTGCGTTGTTTGTT 767
consensus_9695#2 ATTAGAACATGTTTGCAGGTTACTTACCATCGATATCACAAGGACTGTGCGTTGTTTGTT 338
consensus_9695#4 ------------------------------------------------------------
consensus_9695#3 ATGAATACGTATTTACCAGATTTCTGTC--TGGATGCATAAGAGCAAAATTTCGTTTTCC 336
consensus_9695#1 AATAAAGTTGTATCTCGAATTAAATGGCTTATACTCTCCAAATAGACCAGAACCAACACT 355
consensus_9695#0 TTTAGGAGGGAGATTATTATTGTGAATCTGGGACTGGTCCGCCCACTTCATGTTGTTTCT 827
consensus_9695#2 TTTAGGAGGGAGATTATTATTGTGAATCTGGGACTGGTCCGCCCACTTCATGTTGTTTCT 398
consensus_9695#4 ------------------------------------------------------------
consensus_9695#3 GAGAGGATTTGACGTGGAAAGCATAGCTAGAGACTGCTA-GAATAAGGAATATGTGTAGT 395
consensus_9695#1 GTGTCGCGTATGTCCACCAAATCTGATGGGACCTTCAATGATAGATTCGATTCGTGGTCC 415
consensus_9695#0 TTAGATCCTTCTTGGCCTTCTTTCTCACGTACGCCCAAAACAAGTACATCATGTTGATTT 887
consensus_9695#2 TTAGATCCTTCTTGGCCTTCTTTCTCACGTGTTT---ATTCTTGC--------------- 440
consensus_9695#4 ------------------------------------------------------------
consensus_9695#3 TATATTTATAAGCATACTTCTGATTTGCAGGTTT---ATTCTTG---------------- 436
consensus_9695#1 ATTAGTGGCTGTTGGAAATAATCGTGGTGATATTCAGATTCTAGGGAT------------ 463
consensus_9695#0 TTCTGTCAACCAAATGAATGAGTTGAATATCATCGTAGCTTCAATCGATGGGCGTTTCCA 947
consensus_9695#2 ------------------------------------------------------------
consensus_9695#4 ------------------------------------------------------------
consensus_9695#3 ------------------------------------------------------------
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 GTTTTGGCAACTGCGAGCTGTTCGAGACTCAACTTTCTGTGATGAGGTGAAACCAATTTG 1007
consensus_9695#2 ------------------------------------------------------------
consensus_9695#4 ------------------------------------------------------------
consensus_9695#3 ------------------------------------------------------------
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 GAGCCTTTCGGACCTGCTACCCCATGCACCTGTTGTAGATAAGGCTCCAATAAAGTTGTA 1067
consensus_9695#2 ------------------------------------------------------------
consensus_9695#4 ------------------------------------------------------------
consensus_9695#3 ------------------------------------------------------------
consensus_9695#1 ------------------------------------------------------------
consensus_9695#0 TCTC 1071
consensus_9695#2 ----
consensus_9695#4 ----
consensus_9695#3 ----
consensus_9695#1 ----
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||