cluster # 9696

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Schistosoma mansoni
cluster # 9696 cluster # 9696 Sequences # 11 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9696#0 length = 884 sequences # 9

consensus_9696#1 length = 379 sequences # 2

consensusID : consensus_9696#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 884
fasta sequence

                              [GGATGCACATACTTTTTTCTCAAATTCCCACATTCAACTACCTTTATAGGTTTCAAATCTAATCAAAATGATTTATTAGCATTATTATTAATGTAGGA-TTTATTAACAGCA-GGGAATAGTATAGAGAATTCAATTGCATACAAGTCGTATAATCAGATGGTCATCGAACAAATTTCAAGAAAATATATACGATGAACGCACAAATCAATATCATAACCGGAATGACGGCAAATAATGAGAAATAATGTTCATGCAATGGTACGTTGCTAGTTCTAGTAGGATATTGGTTAGTTGGACAAAGATTATCATTTAAAGAATTTGCAGTGGATATTTCATTGGAAATAGCATTCTTGTTAGAAATCTGTGTTTTGGTATCACACAAAAGTGTACTGGCAAGAAGCTTTTGTAAATGTTCTATTTGACTATTAGCAGTATTTAATTGTTTCGATAAATTATCACGTTCAAGTAACAATTCATTAGCTTCTGCTTGTGCTCTTCTGGTTTCAGATATTAGACGATGATGATCAGCACGACTTGTCGCTACATCGGTTTCAATTACAGCGATTCGACTTTTTAGTGCATCGCATTCTCCTCGAACCAATAACA-GT-AACTCTGCTTTAGCGGCATCTTGTTTTCTTAAATCTTCAGTTAA-TTGTTTATATGTTTCAATCTCATTCGCGGATTCCATTAGCTCATTGTGTAGTTTTGAAAGTTCCTCATCTGTATGCGAATCTTTATCCATACCGCTTGCTTGCAAATGATTAATTTCAACTTTCTGGTTGGCTGTCTCATCCACTTCAGTAGATTGAATATGATCGGTAAGTGTTTCTGTTCCTAGACTAACATCCATTTTCGTTACATGAGTGGTCATGCTCTCCACCTTG]

[+] EMBL CD181669             [GGATGCACATACTTTTTTCTCAAATTCCCACATTCAACTACCTTTATAGGTTTCAAATCTAATCAAAATGATTTATTAGCATTATTATTAATGTAGGATTTTATTAACAGCAGGGGAATAGTATAGAGAATTCAATTGCATACAAGTCGTATAATCAGATGGTCATCGAACAAATTTCAAGAAAATATATACGATGAACGCACAAATCAATATCATAACCGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD181549             [                                                                                               GGA TTTATTACNAGCA GGGAATAGTATAGAGAATTCAATTGCATACAAGTCGTATAATCAGATGGTCATCGAACAAATTTCAAGAAAATATATACGATGAACGCACAAATCAATATCATAACCGGAATGACGGCAAATAATGAGAAATAATGTTCATGCAATGGTACGTTGCTAGTTCTAGTAGGATATTGGTTAGTTGGACAAAGATTATCATTTAAAGAATTTGCAGTGGATATTTCATTGGAAATAGCATTCTTGTTAGAAATCTGTGTTTTGGTATCACACAAAAGTGTACTGGCAAGAAGCTTTTGTAAATGTTCTATTTGACTATTAGCAGTATTTAATTGTTTCGATAAATTATCACGTTCAAGT                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD126243             [                                                                                                                                                                                                                                                      ATGTTCATGCAA GGTACGTTGCTAGTTCTAGTAGGATATTGGTTAGTTGGACAAAGATTATCATTTAAAGAATTTGCAGTGGATATTTCATTGGAAATAGCATTCTTGTTAGAAATCTGTGTTTTGGTATCACACAAAAGTGTACTGGCAAGAAGCTTTTGTAAATGTTCTATTTGACTATTAGCAGTATTTAATTGTTTCGATAAATTATCACGTTCAAGTAACAATTCATTAGCTTCTGCTTGTGCTCTTCTGGTTTCAGATATTAGACGATGATGATCAGCACGACTTGTCGCTACATCGGTTTCAATTACAGCGATTCGACTTTTTAGTGCATCGCATTCTCCTCGAACCAATAACA GT AACTCTGCTTTAGCGGCATCTTGTTTTCTTAAATCTTCAGTTAA TTGTTTATATGTTTCAATCTCATTCGCGG                                                                                                                                                                                                           ]
[-] EMBL CD126249             [                                                                                                                                                                                                                                                           CATGCAATGGTACGTTGCTAGTTCTAGTAGGATATTGGTTAGTTGGACAAAGATTATCATTTAAAGAATTTGCAGTGGATATTTCATTGGAAATAGCATTCTTGTTAGAAATCTGTGTTTTGGTATCACACAAAAGTGTACTGGCAAGAAGCTTTTGTAAATGTTCTATTTGACTATTAGCAGTATTTAATTGTTTCGATAAATTATCACGTTCAAGTAACAATTCATTAGCTTCTGCTTGTGCTCTTCTGGTTTCAGATATTAGACGATGATGATCAGCACGACTTGTCGCTACATCGGTTTCAATTACAGCGATTCGACTTTTTAGTGCATCGCATTCTCCTCGAACCAATAACA GT AACTCTGCTTTAGCGGCATCTTGTTTTCTTAAATCTTCAGTTAA TTG TTATATGTTTCAATCTCATTCGCGGATTCCATTAGCTCA TGTGTAGTTTTGAA                                                                                                                                                                              ]
[-] EMBL CD126187             [                                                                                                                                                                                                                                                           CATGCAATGGTACGTTGCTAGTTCTAGTAGGATATTGGTTAGTTGGACAAAGATTATCATTTAAAGAATTTGCAGTGGATATTTCATTGGAAATAGCATTCTTGTTAGAAATCTGTGTTTTGGTATCACACAAAAGTGTACTGGCAAGAAGCTTTTGTAAATGTTCTATTTGACTATTAGCAGTATTTAATTGTTTCGATAAATTATCACGTTCAAGTAACAATTCATTAGCTTCTGCTTGTGCTCTTCTGGTTTCAGATATTAGACGATGATGATCAGCACGACTTGTCGCTACATCGGTTTCAATTACAGCGATTCGACTTTTTAGTGCATCGCATTCTCCTCGAACCAATAACACGTCACCTCTGCTTTAGCGGCATCTTGTTTTCTTAAATCTTCAGTTAATTTGTTTATATGTTTCAATCTCATTCGCGGga                                                                                                                                                                                                         ]
[+] EMBL CD129506             [                                                                                                                                                                                                                                                                                                GTTAGTTGGACAAAGATTATCATTTAAAGAATTTGCAGTGGATATTTCATTGGAAATAGCATTCTTGTTAGAAATCTGTGTTTTGGTATCACACAAAAGTGTACTGGCAAGAAGCTTTTGTAAATGTTCTATTTGACTATTAGCAGTATTTAATTGTTTCGATAAATTATCACGTTCAAGTAACAATTCATTAGCTTCTGCTTGTGCTCTTCTGGTTTCAGATATTAGACGATGATGATCAGCACGACTTGTCGCTACATCGGTTTCAATTACAGCGATTCGACTTTTTAGTGCATCGCATTCTCCTCGAACCAATAACA GT AACTCTGCTTTAGCGGCATCTTGTTTTCTTAAATCTTCAGTTAA TTGTTTATATGTTTCAATCTCATTCGCGGATTCCATTAGCTCATTGTGTAGTTTTGAAAGTTCCTCATCTGTATGCGAATCTTTATCCATACCGCTTGCTTGCAAATGATTAATTTCAACTTTCTGGTTGGCTGTCTCATCCACTTCAGTAGATTGAATATGATCGGTAAGTGTTT                                                        ]
[-] EMBL CD066605             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TCAATTACAGCGATTCGACTTTTTAGTGCATCGCATTCTCCTCGAACCAATAACA GT AACTTTGCTTTAGCGGCATCTTGTTTTCTTAAATCTTCAGTTAA TTGTTTATATGTTTCAATCTCATTAGCGGATTCCATTAGCTCATTGTGTAGTTTTGAAAGTTCATCATGTGTATGCGAATCTTTATCCATACCGCTTGCTTGCAAATGATTAATTTCAACTTTCTGGTTGGCTGTCTCATCCACTTCAGTAGATTGAATATGATCGGTAAGTGTTTCTGTTCATAGACTAACATCCATTTTGGTTACATGAGTGGTCATGCTCTCCACCTTG]
[-] EMBL CD192773             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AAATCTTCAGTTAA TTGTTTATATGTTTCAATCTCATTCGCGGATTCCATTAGCTCATTGTGTAGTTTTGAAAGCTCCTCATCTGTATGCGAATCTTTATCCATACCGCTTGCTTGCAAATGATTAATTTCAACTTTCTGGTTGGCTGTCTCATCCACTTCAGTAGATTGAATATGATCGGTAAGTGTTTCTGATCCTAGACTAACATCCATTTTCGTT                           ]
[-] EMBL CD067163             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CTCATTGTGTAGTTTTGAAAGTTCCTCATCTGTATGCGAATCTTTATCCATACCGCTTGCTTGCAAATGATTAATTTCAACTTTCTGGTTGGCTGTCTCATCCACTTCAGTAGATTGAATATGATCGGTAAGTGTTTCTGTTCCTAGACTAACATCCATTTTCGTTA                          ]




>consensus_9696#0
GGATGCACATACTTTTTTCTCAAATTCCCACATTCAACTACCTTTATAGGTTTCAAATCT
AATCAAAATGATTTATTAGCATTATTATTAATGTAGGATTTATTAACAGCAGGGAATAGT
ATAGAGAATTCAATTGCATACAAGTCGTATAATCAGATGGTCATCGAACAAATTTCAAGA
AAATATATACGATGAACGCACAAATCAATATCATAACCGGAATGACGGCAAATAATGAGA
AATAATGTTCATGCAATGGTACGTTGCTAGTTCTAGTAGGATATTGGTTAGTTGGACAAA
GATTATCATTTAAAGAATTTGCAGTGGATATTTCATTGGAAATAGCATTCTTGTTAGAAA
TCTGTGTTTTGGTATCACACAAAAGTGTACTGGCAAGAAGCTTTTGTAAATGTTCTATTT
GACTATTAGCAGTATTTAATTGTTTCGATAAATTATCACGTTCAAGTAACAATTCATTAG
CTTCTGCTTGTGCTCTTCTGGTTTCAGATATTAGACGATGATGATCAGCACGACTTGTCG
CTACATCGGTTTCAATTACAGCGATTCGACTTTTTAGTGCATCGCATTCTCCTCGAACCA
ATAACAGTAACTCTGCTTTAGCGGCATCTTGTTTTCTTAAATCTTCAGTTAATTGTTTAT
ATGTTTCAATCTCATTCGCGGATTCCATTAGCTCATTGTGTAGTTTTGAAAGTTCCTCAT
CTGTATGCGAATCTTTATCCATACCGCTTGCTTGCAAATGATTAATTTCAACTTTCTGGT
TGGCTGTCTCATCCACTTCAGTAGATTGAATATGATCGGTAAGTGTTTCTGTTCCTAGAC
TAACATCCATTTTCGTTACATGAGTGGTCATGCTCTCCACCTTG

consensusID : consensus_9696#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 379
fasta sequence

                              [CAATAATGATACTAGTAATACGAGGAGAATAATGGAAAAGCGGTTTTTTGAAAATCTCTAAAGTAACTACAGACAGAGAAGAAACAAACTGAATAACTGTTGACAGTCATTGGTTTTAAATGTACAATAGTAAGCATACTGATTTATATCAACTACACATATGTATAAAAAACAAGTTTATTGATGGAAAATGATAAGAGGTGATACAATTAAAAAGCTAGTTGCTCGGTCGATGAACTGATCATAAATTGAACCAAAATGGATAATCCCCGAGATAGACAATACATATTGGTACAAGTGTAATATAGTGAGTAGAAATCCACGAAATTGCTGACTGAAAGATGGATGCACATACTTTTTTCTCAAATTCCCACATTCA]

[+] EMBL CD067472             [CAATAATGATACTAGTAATACGAGGAGAATAATGGAAAAGCGGTTTTTTGAAAATCTCTAAAGTAACTACAGACAGAGAAGAAACAAACTGAATAACTGTTGACAGTCATTGGTTTTAAATGTACAATAGTAAGCATACTGATTTATATCAACTACACATATGTATAAAAAACAAGTTTATTGATGGAAAATGATAAGAGGTGATACAATTAAAAAGCTAGTTGCTCGGTCGATGAACTGATCATAAATTGAACCAAAATGGATAATCCCCGAGATAGACAATACATATTGGTACAAGTGTAATATAGTGAGTAGAAATCCACGAAATTGCTGACTGAAAGATGGATGCACATACTTTTTTCTCAAATTCCCACATTCA]
[+] EMBL CD066807             [CAATAATGATACTAGTAATACGAGGAGAATAATGGAAAAGCGGTTTTTTGAAAATCTCTAAAGTAACTACAGACAGAGAAGAAACAAACTGAATAACTGTTGACAGTCATTGGTTTTAAATGTACAATAGTAAGCATACTGATTTATATCAACTACACATATGTATAAAAAACAAGTTTATTGATGGAAAATGATAAGAGGTGGTACAGTTAAAAAGCTAGTTGCTTGGTCGATGAACTGATCATAAATTGAACCAAAATGGATAATCCCCGAGATAGACAATACATATTGGT                                                                                      ]




>consensus_9696#1
CAATAATGATACTAGTAATACGAGGAGAATAATGGAAAAGCGGTTTTTTGAAAATCTCTA
AAGTAACTACAGACAGAGAAGAAACAAACTGAATAACTGTTGACAGTCATTGGTTTTAAA
TGTACAATAGTAAGCATACTGATTTATATCAACTACACATATGTATAAAAAACAAGTTTA
TTGATGGAAAATGATAAGAGGTGATACAATTAAAAAGCTAGTTGCTCGGTCGATGAACTG
ATCATAAATTGAACCAAAATGGATAATCCCCGAGATAGACAATACATATTGGTACAAGTG
TAATATAGTGAGTAGAAATCCACGAAATTGCTGACTGAAAGATGGATGCACATACTTTTT
TCTCAAATTCCCACATTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9696#0      GGATGCACATACTTTTTTCTCAAATTCCCACATTCAACTACCTTTATAGGTTTCAAATCT 60
consensus_9696#1      -------------------------------------CAATAATGATA--CTAGTAATAC 21
                                                           * *   * ***   *   ***  

consensus_9696#0      AATCAAAATGATTTATTAGCA--TTATTATTAATGTAGGATTTATTAACAGCAGGGAATA 118
consensus_9696#1      GAGGAGAATAATGGAAAAGCGGTTTTTTGAAAATCTCTAAAGTAACTACAGACAGAGAAG 81
                       *  * *** **  *  ***   ** **   *** *   *  **   ****   *  *  

consensus_9696#0      GTATAGAGAATTCAATTGCATACAAGTCGTATAATCAGATGGTCATCGAACAAATTTCAA 178
consensus_9696#1      AAACAAACTGAATAACTGTTGACAGTCATTGGTTTTAAATGTACAAT-AGTAAG---CAT 137
                        * * *      ** **   ***     *    * * ***  **   *  **    ** 

consensus_9696#0      GAAAATATATACGATGAACGCACAAATCAATATCATAACCGGAATGACGGCAAATAATGA 238
consensus_9696#1      ACTGATTTATATCAACTACACATATGTATAAAAAACAAGTTTATTGATGGAAAATGATAA 197
                          ** ****  *   ** ** *  *  * *  * **    * *** ** **** ** *

consensus_9696#0      GAAATAATGTTCATGCAATGGTACGTTGCTAGTTCTAGTAGGATATTGGTTAGTTGGACA 298
consensus_9696#1      GAGGTGATACAATTAAAAAGCTA-GTTGCTCGGTC-GATGAACTGATCATAAATTGAACC 255
                      **  * **     *  ** * ** ****** * **   *    *  *  * * *** ** 

consensus_9696#0      AAGATT-ATCATTTAAAGAATTTGCAGTGGATATTTCATTGGAAATAGCATTCTTGTTAG 357
consensus_9696#1      AAAATGGATAATCCCCGAGATAGACAATACATATTGGTACAAGTGTAATATAGTGAGTAG 315
                      ** **  ** **       **   ** *  *****          **  **  *   ***

consensus_9696#0      AAATCTGTGTTTTGGTATCACACAAAAGTGTACTGGCAAGAAGCTTTTGTAAATGTTCTA 417
consensus_9696#1      AAATCCACGAAATTGC-TGACTGAAAGATGGATGCACATACTTTTTTCTCAAATTCCCAC 374
                      *****   *   * *  * **  ***  ** *    **      ***   ****   *  

consensus_9696#0      TTTGACTATTAGCAGTATTTAATTGTTTCGATAAATTATCACGTTCAAGTAACAATTCAT 477
consensus_9696#1      ATTCA------------------------------------------------------- 379
                       ** *                                                       

consensus_9696#0      TAGCTTCTGCTTGTGCTCTTCTGGTTTCAGATATTAGACGATGATGATCAGCACGACTTG 537
consensus_9696#1      ------------------------------------------------------------
                                                                                  

consensus_9696#0      TCGCTACATCGGTTTCAATTACAGCGATTCGACTTTTTAGTGCATCGCATTCTCCTCGAA 597
consensus_9696#1      ------------------------------------------------------------
                                                                                  

consensus_9696#0      CCAATAACAGTAACTCTGCTTTAGCGGCATCTTGTTTTCTTAAATCTTCAGTTAATTGTT 657
consensus_9696#1      ------------------------------------------------------------
                                                                                  

consensus_9696#0      TATATGTTTCAATCTCATTCGCGGATTCCATTAGCTCATTGTGTAGTTTTGAAAGTTCCT 717
consensus_9696#1      ------------------------------------------------------------
                                                                                  

consensus_9696#0      CATCTGTATGCGAATCTTTATCCATACCGCTTGCTTGCAAATGATTAATTTCAACTTTCT 777
consensus_9696#1      ------------------------------------------------------------
                                                                                  

consensus_9696#0      GGTTGGCTGTCTCATCCACTTCAGTAGATTGAATATGATCGGTAAGTGTTTCTGTTCCTA 837
consensus_9696#1      ------------------------------------------------------------
                                                                                  

consensus_9696#0      GACTAACATCCATTTTCGTTACATGAGTGGTCATGCTCTCCACCTTG 884
consensus_9696#1      -----------------------------------------------