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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9712#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 872 fasta sequence
[TTTTTTTTTTTTTTTTTAATATTCAATAAGTTTTATTTTCTTACAGTGAGGTTAACAAATTAATTGTATATCATACAAAAAAGTAGTAAGGTTGAATTTTTTACAAAAGACAGTGTTATATACAATGAAACACTTTTGACCGACATTCACTTAACACTTAACAGTTGGGTATTCCCGAACCAGCCTGGAGAAAATATGTTAACCCATGCCGTTTTGAGAACATTAGTTGTTTCGACGAAGAATTTTAATCTCAATAAAATCAGTAACTTTCAATCTGTATGAAATAAAATATCACTGCACAAAATAAAGTCCTCCTAAAGATGTATTTGCACGAGATAAATATTCACATGATCAATTGTCGTGAACCACACAAACTAGTTTACTGCCTTTTGCATGGTCTGTAGAACTTTCTGAGCGTGAGAAACAGCAGAATCAAACAAAACATTCCACGAGTTGACTACATCAC-TTTCATTTGTACTCGCCACAAA-TAAATTGTCCCACAAACCCGTTAAAAATGCATTGATCACAGAAAGATCGACGATAGCACCCTGAGAAACAGTTATGTGTACTGGGCCAGCATCCGTATCCCAAATATCTAACTCTCGTTTCGTTGGTTGGGCAATAATAGGGACTGTCTTTGACTTTCTATCAGCAACCGGGCGAGGAACGAAGCAGAAAGACAGCGAAACAGGCCATTCATTCACTTTTAAGGATATTGTCTCATTTAATGGTCCTGGTTTATATAATTCTAAGTAGGATCCCGCAGCTTGTTCATCCGTAACCGCATATAACTTTGTCCATTTTGTTGTACAAAGACTAACAAGTGCAGCGGGGACACAAGCATCTAGTAAGCACCCATCGTCCTCGTGACG]
[+] EMBL AI395087 [TTTTTTTTTTTTTTTTTAATATTCAATAAGTTTTATTTTCTTACAGTGAGGTTAACAAATTAATTGTATATCATACAAAAAAGTAGTAAGGTTGAATTTTTTACAAAAGACAGTGTTATATACAATGAAACACTTTTGACCGACATTCACTTAACACTTAACAGTTGGGTATTCCCGAACCAGCCTGGAGAAAATATGTTAACCCATGCCGTTTTGAGAACATTAGTTGTTTCGACGAAGAATTTTAATCTCAATAAAATCAGTAACTTTCAATCTGTATGAAATAAAATATCACTGCACAAAATAAAGTCCTCCTAAAGATGTATTTGCACGAGATAAATATTCACATGATCAATTGTCGTGAg ]
[+] EMBL CD073996 [ TAAGTTTTATTTTCTTACAGTGAGGTTAACAAATTAATTGTATATCATACAAAAAAGTAGTAAGGTTGAATTTTTTACAAAAGACAGTGTTATATACAATGAAACACTTTTGACCGACATTCACTTAACACTTAACAGTTGGGTATTCCCGAACCAGCCTGGAGAAAATATGTTAACCCATGCCGTTTTGAGAACATTAGTTGTTTCGATGAAGAATTTTAATCTCAATAAAATCAGTAACTTTCAATCTGTATGAAATAAAATATCACTGCACAAAATAAAGTCTTCTTATAGATGTATTTGCACGAGATAAATATTCACATGATCAATTGTCGTGAACCACACAAACTAGTTTACTGCCTTTTGCATGGTCTGTAGAACTTTCTGAGCGTGAGAAACAGCAGAATCAAACAAAACATTCCACGCGTTGACTACATCAC TTTCATTTGTACTCGCTACAAA TAAATTGTCCCACAAACCCGTTAAAAATGCATTGATCACAGAAAGATCGACGATAGCACCCTGAGAAACAGTTATGTGTACTGGGCCAGCATCCGTATCCCAAATATCTAACTCTCGTTTCGTTGGTTGGGCAATAATAGGGACTGTCTTTGACTTTCTATCAGCAACCGGGCGAGGAACGAAGCAGAAAGACAGCGAAACAGGCCATTCATT ]
[-] EMBL CD168744 [ GTATTTGCACGAGATAAATATTCACATGATCAATTGTCGTGAACCACACAAACTAGTTTACTGCCTTTTGCATGGTCTGTAGAACTTTCTGAGCGTGAGAAACAGCAGAATCAAACAAAACATTCCACGAGTTGACTACATCAC TTTCATTTGTACTCGCCACAAA TAAATTGTCCCACAAACCCGTTAAAAATGCATTGATCACAGAAAGATCGACGATAGCACCCTGAGAAACAGTTATGTGTACTGGGCCAGCATCCGTATCCCAAATATCTAACTCTCGTTTCGTTGGTTGGGCAATAATAGGGACTGTCTTTGACTTTCTATCAGCAACCGGGCGAGGAACGAAGCAGAAAGACAGCGAAACAGGCCATTCATTCACTTTTAAGGATATTGTCTCATTTAATGGTCCTGGTTTATATAATTCTAAGTAGGATCCCGCAGCTTGTTCATCCGTAACCGCATATAACTTTGTCCATTTTGTTGTACAAAGACTAACAAGTGCAGCGGGGACACAAGCATCTAGTAAGCACCCATCG ]
[+] EMBL CD134343 [ GGTCTGTAGAACTTTCTGAGCGTGAGAAACAGCAGAATCAAACGGGAGATTCCACGAGTTGACTACATCACATTTCATTTGTACTCGCCACAAAGTAAATTGTCCCACAAACCCGTTAAAAATGCATTGATCACAGAAAGATCGACGATAGCACCCTGAGAAACAGTTAT ]
[-] EMBL CD078197 [ TTTTAAGGATATTGTCTCATTTAATGGTCCTGGTTTATATAATTCTAAGTAGGATCCCGCAGCTTGTTCATCCGTAACCGCATATAACTTTGTCCATTTTGTTGTACAAAGACTAACAAGTGCAGCGGGGACACAAGCATCTAGTAAGCACCCATCGTCCTCGTGACG]
consensusID : consensus_9712#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 571 fasta sequence
[TATGATTGCATTGCCTTTCTCAAAAATACATATGAATGCTTTGAAGACAGCTTGGGTCATTGGATGTGCATTTTCCCCTTCTATGAACTTTGTTGCTAGTGGTGGATTAGATAATGTCATATCTTATTTCGATTTAAAGTCTCAGGACGGCACCGCAGAGTTTGTCCGCGAGTTTACTGGTCATAATGGTTACATCGCATGTGTCCGATTCATTGATGATAATCGATTACTGAGTTGTTCTGGTGACAAAACTTGTGCACTGTGGGATATCGAAAAGTCTAAAATCACTACAAGTTTTCGTGGACACTCAAATGATGTTAACGCCATTGCCGTTTCGAAGCAGATGCCAAATTTGTTTGTTTCTGCATCTTCAGACCGCACTTGTCGGTTGGGGGATCTTCGGTGCGGCGAAGGTATGCAGTACTTCGAAGGACACCAGCAGGATGTTAATGGTGTGGACTTTTTCCCCGTCAATTCTTATGCTTTCGCCTCTTCTTCCGACGATGGCTCGTGTCATTTGTGGGATCTACGAGCTGATCAGGCAATTGGGGTCTATATTGATGACTTCATT]
[-] EMBL CD180661 [TATGATTGCATTGCCTTTCTCAAAAATACATATGAATGCTTTGAAGACAGCTTGGGTCATTGGATGTGCATTTTCCCCTTCTATGAACTTTGTTGCTAGTGGTGGATTAGATAATGTCATATCTTATTTCGATTTAAAGTCTCAGGACGGCACCGCAGAGTTTGTCCGCGAGTTTACTGGTCATAATGGTTACATCGCATGTGTCCGATTCATTGATGATAATCGATTAC ]
[+] EMBL CD196706 [ AAATTCATATGATTGCTTTGAAGACAGCTTGGGTCATTGGATGTGCATTTTCCCCTTCTATGAACTTTGTTGCTAGTGGTGGATTAGATAATGTCATATCTTATTTCAATTTAAAGTCTCAGGACGGCACCGCAGAGTTTGTCCGCGAGTTTACTGGTCATAATGGTTACATCGCATGTGTCCGATTCATTGATGATAATCGATTACTGAGTTGTTCTGGTGACAAAACTTGTGCACTGTGGGATATCGAAAAGTCTAAAATCACTACAAGTTTTCGTGGACACTCAAATGATGTTAACGCCATTGCCGTTTCGAAGCAGATGCCAAATTTGTTTGTTTCTGCATCTTCAGACCGCACTTGTCGGTTGGGGGATCT ]
[+] EMBL CD135314 [ ATGGTTACATCGCATGTGTCCGATTCATTGATGATAATCGATTACTGAGTTGTTCTGGTGACAAAACTTGTGCACTGTGGGATATCGAAAAGTCTAAAATCACTACAAGTTTTCGTGGACACTCTAATGATGTTAACGCCATTGCCGTTTCGAAGCAGATGCCAAATTTGTTTGTTTCTGCATCTTCAGACCGCACTTGTCGGTTGTGGGATCTTCGGTGCGGCGAAGGTATGCAGTACTTCGAAGGACACCAGCAGGATGTTAATGGTGTGGACTTTTTCCCCGTCAATTCTTATGCTTTCGCCTCTTCTTCCGACGATGGCTCGTGTCATTTGTGGGATCTACGAGCTGATCAGGCAATTGGGGTCTATATTGATGACTTCATT]
consensusID : consensus_9712#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence
[AGCAGAATCAAACAAAACATTCCACGCGTTGACTACATCACTTTCATTTGTACTCGCTACAAATAAATTGTCCCACAAACCCGTTAAAAATGCATTGATCACAGAAAGATCGACGATAGCACCCTGAGAAACAGTTATGTGTACTGGGCCAGCATCCGTATCCCAAATATCTAACTCTCGTTTCGTTGGTTGGGCAATAATAGGGACTGTCTTTGACTTTCTATCAGCAACCGGGCGAGGAACGAAGCAGAAAGACAATTGGAATCCCATGACCCAGTTGCAACACCTATGCCACTATCAGATACTGTTACACAAGAGACCCGGTTTTCGTGGGCGGACATGATTCCAACACGTTCTTCTCGTAGCAGATCCCAGACGTGACAGTTGAAGTCATCGTATCCAGCAAGTAACAGACGACCCGACTTTGAAATTGCCACACTACTACTACCACAGTTAATGAAGTCATCAATATAGGCACCAATTGCC]
[-] EMBL CD094906 [AGCAGAATCAAACAAAACATTCCACGCGTTGACTACATCACTTTCATTTGTACTCGCTACAAATAAATTGTCCCACAAACCCGTTAAAAATGCATTGATCACAGAAAGATCGACGATAGCACCCTGAGAAACAGTTATGTGTACTGGGCCAGCATCCGTATCCCAAATATCTAACTCTCGTTTCGTTGGTTGGGCAATAATAGGGACTGTCTTTGACTTTCTATCAGCAACCGGGCGAGGAACGAAGCAGAAAGACAATTGGAATCCCATGACCCAGTTGCAACACCTATGCCACTATCAGATACTGTTACACAAGAGACCCGGTTTTCGTGGGCGGACATGATTCCAACACGTTCTTCTCGTAGCAGATCCCAGACGTGACAGTTGAAGTCATCGTATCCAGCAAGTAACAGACGACCCGACTTTGAAATTGCCACACTACTACTACCACAGTTAATGAAGTCATCAATATAGGCACCAATTGCC]
consensusID : consensus_9712#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence
[ATGAAGAAATATCGGAAGAGGAAAAGGCTTTGGATGCAGAAATACTGAATCTTAAAACTTCAATTACTGATGCACAGAAAGCTGTTGCAGATACAGACTTTTACAAAATGACTGCGAACGTACCTGAACTTGGTAGAATTAAGTTCAAAGTACGTAAACATTTACGAGGTCATCTAGCTAAAGTGACGTCTATCCAATGGGCTTCTGACAACCAGTTACTATTGTCCGCTTCTCAAGATGGAAAATTAATCGTTTGGGATACATTTTCTGGAAAGAAAATTCATATGATTGCTTTGAAGACAGCTTGGGTCATTGGATGTGCATTTTCCCCTTCTATGAACTTTGTTGCTAGGGGTGGATTAAATAATGTCATATCTTATTTCA]
[+] EMBL CD188789 [ATGAAGAAATATCGGAAGAGGAAAAGGCTTTGGATGCAGAAATACTGAATCTTAAAACTTCAATTACTGATGCACAGAAAGCTGTTGCAGATACAGACTTTTACAAAATGACTGCGAACGTACCTGAACTTGGTAGAATTAAGTTCAAAGTACGTAAACATTTACGAGGTCATCTAGCTAAAGTGACGTCTATCCAATGGGCTTCTGACAACCAGTTACTATTGTCCGCTTCTCAAGATGGAAAATTAATCGTTTGGGATACATTTTCTGGAAAGAAAATTCATATGATTGCTTTGAAGACAGCTTGGGTCATTGGATGTGCATTTTCCCCTTCTATGAACTTTGTTGCTAGGGGTGGATTAAATAATGTCATATCTTATTTCA]
consensusID : consensus_9712#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence
[GTTAAAATGGTCAGATTCTACATCACGTAAAGTTTAATTTAAGAGATCATTAGAAATAAAAAGAAACGATTCCAAAAGTATCAAAAATTTGAGTAATCACTTCAAGAATTTAGTTGATACATACCTATTTCGCAGTCCATATGAGACAATTGGAATCCCATGACCCAGTTGCAACACCTATGCCACTATCAGATACTGTTACACAAGAGACCCGGTTTTCGTGGGCGGACATGATTCCAACACGTTCTTCTCGTAGCAGATCCCAGACGTGACAGTTGAAGTCATCGTATCCAGCAAGTAACAGACGACCCGACTTTGAAATTGCCACACTACTACTACCACAGTTAATGAAGTCATCAATATAGA]
[+] EMBL CD131167 [GTTAAAATGGTCAGATTCTACATCACGTAAAGTTTAATTTAAGAGATCATTAGAAATAAAAAGAAACGATTCCAAAAGTATCAAAAATTTGAGTAATCACTTCAAGAATTTAGTTGATACATACCTATTTCGCAGTCCATATGAGACAATTGGAATCCCATGACCCAGTTGCAACACCTATGCCACTATCAGATACTGTTACACAAGAGACCCGGTTTTCGTGGGCGGACATGATTCCAACACGTTCTTCTCGTAGCAGATCCCAGACGTGACAGTTGAAGTCATCGTATCCAGCAAGTAACAGACGACCCGACTTTGAAATTGCCACACTACTACTACCACAGTTAATGAAGTCATCAATATAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9712#2 ------------------------------------------------------------
consensus_9712#4 ------------------------------------------------------------
consensus_9712#0 TTTTTTTTTTTTTTTTTAATATTCAATAAGTTTTATTTTCTTACAGTGAGGTTAACAAAT 60
consensus_9712#1 ------------------------------------------------------------
consensus_9712#3 ------------------------------------------------------------
consensus_9712#2 ------------------------------------------------------------
consensus_9712#4 ------------------------------------------------------------
consensus_9712#0 TAATTGTATATCATACAAAAAAGTAGTAAGGTTGAATTTTTTACAAAAGACAGTGTTATA 120
consensus_9712#1 ------------------------------------------------------------
consensus_9712#3 ------------------------------------------------------------
consensus_9712#2 ------------------------------------------------------------
consensus_9712#4 ------------------------------------------------------------
consensus_9712#0 TACAATGAAACACTTTTGACCGACATTCACTTAACACTTAACAGTTGGGTATTCCCGAAC 180
consensus_9712#1 ------------------------------------------------------------
consensus_9712#3 ------------------------------------------------------------
consensus_9712#2 ------------------------------------------------------------
consensus_9712#4 ------------------------------------------------------------
consensus_9712#0 CAGCCTGGAGAAAATATGTTAACCCATGCCGTTTTGAGAACATTAGTTGTTTCGACGAAG 240
consensus_9712#1 ------------------------------------------------------------
consensus_9712#3 ------------------------------------------------------------
consensus_9712#2 ------------------------------------------------------------
consensus_9712#4 ------------------------------------------------------------
consensus_9712#0 AATTTTAATCTCAATAAAATCAGTAACTTTCAATCTGTATGAAATAAAATATCACTGCAC 300
consensus_9712#1 ------------------------------------------------------------
consensus_9712#3 ------------------------------------------------------------
consensus_9712#2 ------------------------------------------------------------
consensus_9712#4 ------------------------------------------------------------
consensus_9712#0 AAAATAAAGTCCTCCTAAAGATGTATTTGCACGAGATAAATATTCACATGATCAATTGTC 360
consensus_9712#1 --------------------------------------TATGATTGCATTGCCTTTCTCA 22
consensus_9712#3 ------------------------------------------------------------
consensus_9712#2 ------------------------------------------------------------
consensus_9712#4 ------------------------------------------------------------
consensus_9712#0 GTGAACCACACAAACTAGTTTACTGCCTTTTGCATGGTCTGTAGAACTTTCTGAGCGTGA 420
consensus_9712#1 AAAATACATATGAATGCTTTGAAGACAGCTTGGGTCATTGGATGTGCATTTTCCCCTTCT 82
consensus_9712#3 ------------------------------------------------------------
consensus_9712#2 -----AGCAGAATCAAACAAAACATTCCACGCGTTGACTACATCACTTTCATTTGTACTC 55
consensus_9712#4 ------------------------------------------------------------
consensus_9712#0 GAAACAGCAGAATCAAACAAAACATTCCACGAGTTGACTACATCACTTTCATTTGTACTC 480
consensus_9712#1 ATGAACTTTGTTGCTAGTGGTGGATTAGATAATGTCA-TATCTTATTTCGATTTAAAGTC 141
consensus_9712#3 --------------------------------------------------ATGAAGAAAT 10
consensus_9712#2 GCTACAAATAAATTGTCCCACAAACCCGTTAAAAATGCATTGA-TCACAGAAAGATCGAC 114
consensus_9712#4 ---------------------------GTTAAAA-TGGTCAGA-TTCTACATCACGTAAA 31
consensus_9712#0 GCCACAAATAAATTGTCCCACAAACCCGTTAAAAATGCATTGA-TCACAGAAAGATCGAC 539
consensus_9712#1 TC----AGGACGGCACCGCAGAGTTTGTCCGCGAGTTTACTGG-TCATAATGGTTACATC 196
consensus_9712#3 AT-----CGGAAGAGGAAAAGGCTTTGGATGCAGAAATACTGAATCTTAAAACTTCAATT 65
* * *
consensus_9712#2 GATAGCACCCTGAGAAACAGTT-ATGTGTACTGGGCCAGCATCCGTATCCCAAATATCTA 173
consensus_9712#4 GTT--TAATTTAAGAGATCATT-AGAAATAAAAAGAAACGATTCCAA----AAGTATCAA 84
consensus_9712#0 GATAGCACCCTGAGAAACAGTT-ATGTGTACTGGGCCAGCATCCGTATCCCAAATATCTA 598
consensus_9712#1 GCATGTGTCC---GATTCATTG-ATG-ATAATCGATTACTGAGT-TGTTCTGGTGACAAA 250
consensus_9712#3 ACTGATGCACAGAAAGCTGTTGCAGATACAGACTTTTACAAAATGACT----GCGAACGT 121
* * * * * *
consensus_9712#2 ACTCTCGTTTCGTTGGTTGGGCAATAATAGGGACTGTCTTTGACTTTCTATCAGCAACCG 233
consensus_9712#4 AAATTTGAGTAATCACTT---CAAGAATTTAGTTGATACATACCTATTTCGCAGT--CCA 139
consensus_9712#0 ACTCTCGTTTCGTTGGTTGGGCAATAATAGGGACTGTCTTTGACTTTCTATCAGCAACCG 658
consensus_9712#1 ACTTGTGCACTGTGGGATATCGAAAAGTCTAAAATCACTACAAGTTTTCGTGGACACTCA 310
consensus_9712#3 ACCTGAACTTGGTAGAAT-----TAAGTTCAAAGTACGTAAACATTTACGAGGTCATCTA 176
* * * * * * *
consensus_9712#2 GGCGAGGAACGAAGCAGAAAGACAATTGGAATCCCATGACCCAGTTGCA-ACACCTATGC 292
consensus_9712#4 TATGAG---------------ACAATTGGAATCCCATGACCCAGTTGCA-ACACCTATGC 183
consensus_9712#0 GGCGAGGAAC-----------GAAGCAGAAAGACAGCGAAACAG--GCC-ATTCATTCAC 704
consensus_9712#1 AATGATG--TTAACGCCATTGCCGTTTCGAAGCAGATGCCAAATTTGTTTGTTTCTGCAT 368
consensus_9712#3 GCTAAAG---TGACGTC-TATCCAATGGGCTTCTGACAACCAGTT-ACTATTGTCCGCTT 231
*
consensus_9712#2 CACTATCAGATA--CTGTTACAC--AAGAGACCCGGTTTTCGTGGGCGG--ACATGATTC 346
consensus_9712#4 CACTATCAGATA--CTGTTACAC--AAGAGACCCGGTTTTCGTGGGCGG--ACATGATTC 237
consensus_9712#0 TTTTAA-GGATA--TTGTCTCATTTAATGGTCCTGGTTTATATAATTCT--AAGTAGGAT 759
consensus_9712#1 CTTCAGACCGCA--CTTGTCGGTTGGGGGATCTTCGGTGCGGCGAAGGT--ATGCAGTAC 424
consensus_9712#3 CTCAAGATGGAAAATTAATCGTTTGGGATACATTTTCTGGAAAGAAAATTCATATGATTG 291
* * * * *
consensus_9712#2 CAACACGTTCTTCTCGTAGCAGATCCCAGACGTGACAGTTGAAGTCATCGTATCCAGCAA 406
consensus_9712#4 CAACACGTTCTTCTCGTAGCAGATCCCAGACGTGACAGTTGAAGTCATCGTATCCAGCAA 297
consensus_9712#0 CC-CGCAGCTTGTTCATCCGTAACCGCATATAACTTTGTCCATTTTGTTGTA--CAAAGA 816
consensus_9712#1 TT-CGAAGGACACCAGCAGGATGTTAATGGTGTGGACTTTTTCCCCGTCAATTCTTATGC 483
consensus_9712#3 CTTTGAAGACAGCT--TGGGTCATTGGATGTGCATTTTCCCCTTCTATGAACTTTGTTGC 349
*
consensus_9712#2 GT--AACAGACGACCCGACTTTG-AAATTGCCACACTACTACTACCACAGTTAATGAAGT 463
consensus_9712#4 GT--AACAGACGACCCGACTTTG-AAATTGCCACACTACTACTACCACAGTTAATGAAGT 354
consensus_9712#0 CT--AACAAGTGCAGCGGGGACA-CAAGCATCTAGTAAGCACCCATCGTCCTCGTGACG- 872
consensus_9712#1 TTTCGCCTCTTCTTCCGACGATGGCTCGTGTCATTTGTGGGATCTACGAGCTGATCAGGC 543
consensus_9712#3 TA---GGGGTGGATTAAATAATGTCATATCTTATTTCA---------------------- 384
consensus_9712#2 CATCAATATAGGCACCAATTGCC----- 486
consensus_9712#4 CATCAATATAGA---------------- 366
consensus_9712#0 ----------------------------
consensus_9712#1 AATTGGGGTCTATATTGATGACTTCATT 571
consensus_9712#3 ----------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||