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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9714#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 941 fasta sequence
[AAATGTGAAAACACTTGGACCAAGTAGAGGAAATACAATATAGAAGTGTTCATGCCATTCAAAGAAATCTATAGATGATATACAATGGGATCGATCTTTGGCATCTAGTCTTGCAATCGTTTCTAAAACATTAACCTCGTGACGTGCAGCATCACTATAATCACTCTGAGGTTTAAGAGCCTTGACAGCAGTCAACGTATTTGTGTACAAGTCAAAACATTCAAAAACTTGCCCATAGCTACCCTCTCCTAGTATCTTCTCCACTCGAAAGCGTCGCTTGATAATGTCACCGACCGGTACAATAGCAGATGGTTTGCGTTTGTGGTGCTCATGACTAGCTTTCCTTCGTGCCTTTTCATCGCGACGCTTCTCTTCTCTCTTCCGACGTGCTATTTGCTTGTCATCTCTGTCAGGGAGTCTCGGAGAACCAGAAAATTGCCCATTATGTAAACGAACCCGCATTGAATGCCCATCATGGATTTCGATACTTGGACTACGCTGTCGTTCTCGCTTAGTTGGATGGTGAGGCGGAGGTTTGGTAGCATGACTAGGAGCGATGCCACTGCAGGAGGAACTGTTAGAACGGTCTCGAGGACGGCCCTTATCACCAGAGATACGTACTGC-CTT-----ACAG-GTGCTCGTTGTATGATTGAAATTAGGAAGTGATACATGGGAACTATGATTCAGCCTTTTACTACGTTCTGAAACACGACGTCTTTTAGGGTCTGAACAACCATAACCAGAAGATGCTTTTTCGGATGTGCTGGACCGTTTTCGATGACCAGCTGATGAAGAAGAAGTGGAACAAACAGAATCCGATACATATCTAGTTTCCTTGTTTCTGAACAGGGAATTGAAGCAACAACGATGATTGCTTTTAGAACGCCAACCATGGCTGTTAGAAT-CCCCTCGTCTCAAGACCATCATCAAATAGGGCGCACTTC]
[-] EMBL CD161771 [AAATGTGAAAACACTTGGACCAAGTAGAGGAAATACAATATAGAAGTGTTCATGCCATTCAAAGAAATCTATAGATGATATACAATGGGATCGATCTTTGGCATCTAGTCTTGCAATCGTTTCTAAAACATTAACCTCGTGACGTGCAGCATCACTATAATCACTCTGAGGTTTAAGAGCCTTGACAGCAGTCAACGTATTTGTGTACAAGTCAAAACATTCAAAAACTTGCCCATAGCTACCCTCTCCTAGTATCTTCTCCACTCGAAAGCGTCGCTTGATAATGTCACCGACCGGTACAATAGCAGATGGTTTGCGTTTGTGGTGCTCATGACTAGCTTTCCTTCGTGCCTTTTCATCGCGACGCTTCTCTTCTCTCTTCCGACGTGCTATTTGCTTGTCATCTCTGTCAGGGAGTCTCGGAGAACCAGAAAATTGCCCATTATGTAAACGAACCCGCATTGAATGCCCATCATGGATTTCGATACTTGGACTACGCTGTCGTTCTCGCTTAGTTGGATGGTGAGGCGGAGGT ]
[-] EMBL CD138678 [ CGTGACGTGCAGCATCACTATAATCACTCTGAGGTTTAAGAGCCTTGACAGCAGTCAACGAATTTGTGTACAAGTCAAAACATTCAAAAACTTGCCCATAGCTACCCTCTCCTAGTATCTTCTCCACTCGAAAGCGTCGCTTGATAATGTCACCGACCGGTACAATAGCAGATGGTTTGCGTTTGTGGTGCTCATGACTAGCTTTCCTTCGTGCCTTTTCATCGCGACGCTTCTCTTCTCTCTTCCGACGTGCTATTTGCTTGTCATCTCTGTCAGGGAGTCTCGGAGAACCAGAAAATTGCCCATTATGTAAACGAACCCGCATTGAATGCCCATCATGGATTTCGATACTTGGACTACGCTGTCGTTCTCGCTTAGTTGGATGGTGAGGCGGAGGTTTGGTAGCATGACTAGGAGCGATGCCACTGCAGGAGGAACT ]
[-] EMBL CD084436 [ CACTATAATCACTCTGAGGTTTAAGAGCCTTGACAGCAGTCAACGTATTTGTGTACAAGTCAAAACATTCAAAAACTTGCCCATAGCTACCCTCTCCTAGTATCTTCTCCACTCGAAAGCGTCGCTTGATAATGTCACCGACCGGTACAATAGCAGATGGTTTGCGTTTGTGGTGCTCATGACTAGCTTTCCTTCGTGCCTTTTCATCGCGACGCTTCTCTTCTCTCTTCCGACGTGCTATTTGCTTGTCATCTCTGTCAGGGAGTCTCGGAGAACCAGAAAATTGCCCATTATGTAAACGAACCCGCATTGAATGCCCATCATGGATTTCGATACTTGGACTACGCTGTCGTTCTCGCTTAGTTGGATGGTGAGGCGGAGGTTTGGTAGCATGACTAGGAGCGATGCCACTGCAGGAGGAACTGTTAGAACGGTCTCGAGGACGGCCCTTATCACCAGAGATACGTACTGC CTT ACAG GTGCTCGntactcc ]
[-] EMBL CD081239 [ TAATCACTCTGAGGTTTAAGAGCCTTGACAGCAGTCAACGAATTTGTGTACAAGTCAAAACATTCAAAAACTTGCCCATAGCTACCCTCTCCTAGTATCTTCTCCACTCGAAAGCGTCGCTTGATAATGTCACCGACCGGTACAATAGCAGATGGTTTGCGTTTGTGGTGCTCATGACTAGCTTTCCTTCGTGCCTTTTCATCGCGACGCTTCTCTTCTCTCTTCCGACGTGCTATTTGCTTGTCATCTCTGTCAGGGAGTCTCGGAGAACCAGAAAATTGCCCATTATGTAAACGAACCCGCATTGAATGCCCATCATGGATTTCGATACTTGGACTACGCTGTCGTTCTCGCTTAGTTGGATGGTGAGGCGGAGGTTTGGTAGCATGACTAGGAGCGATGCCACTGCAGGAGGAACTGTTAGAACGGTCTCGAGGACGGCCCTTATCACCAGAGATACGTACTGC CTT ACAG GTGCTCGTTG ]
[+] EMBL CD094712 [ CTCATGACTAGCTTTCCTTCGTGCCTTTTCATCGCGACGCTTCTCTTCTCTCTTCCGACGTGCTATTTGCTTGTCATCTCTGTCAGGGAGTCTCGGAGAACCAGAAAATTGCCCATTATGTAAACGAACCCGCATTGAATGCCCATCATGGATTTCGATACTTGGACTACGCTGTCGTTCTCGCTTAGTTGGATGGTGAGGCGGAGGTTTGGTAGCATGACTAGGAGCGATGCCACTGCAGGAGGAACTGTTAGAACGGTCTCGAGGACGGCCCTTATCACCAGAGATACGTACTGC CTT ACAG GTGCTCGTTGTATGATTGAAATTAGGAAGTGATACATGGGAACTATGATTCAGCCTTTTACTACGTTCTGAAACACGACGTCTTTTAGGGTCTGAACAACCATAACCAGAAGATGCTTTTTCGGATGTGCTGGACCGTTTTCGATGACCAGCTGATGAAGAAGAAGTGGAACAAACAGAATCCGATACATATCTAGTTTCCTTGTTTCTGAACAGGGAATTGAAGCAACAACGATGATTGCTTTTAGAACGCCAACCATGGCTGTTGGAAT CCCCTCGTCTCAAGACCAT ]
[+] EMBL CD094704 [ CTCATGACTAGCTTTCCTTCGTGCCTTTTCATCGCGACGCTTCTCTTCTCTCTTCCGACGTGCTATTTGCTTGTCATCTCTGTCAGGGAGTCTCGGAGAGCCAGAAAATTGCCCATTATGTAAACGAACCCGCATTGAATGCCCATCATGGATTTCGATACTTGGACTACGCTGTCGTTCTCGCTTAGTTGGATGGTGAGGCGGAGGTTTGGTAGCATGACTAGGAGCGATGCCACTGCAGGAGGAACTGTTAGAACGGTCTCGAGGACGGCCCTTATCACCAGAGATACGTACTGC CTT ACAG GTGCTCGTTGTATGATTG AATTAGGAAGTGATACATGGGAACTATGATTCAGCCTTTTACTACGTTCTGAA ]
[-] EMBL CD082840 [ GCGACGC TCTCTTCTCTCTTCCGACGTGCTATTGNCTTGTCATCTCTGTCAGGGAGTCTCGGAGAACCAGAAAATTGCCCATTATGTAAACGAACCCGCATTGAATGCCCATCATGGATTTCGATACTTGGACTACGCTGTCGTTCTCGCTTAGTTGGATGGTGAGGCGGAGGTTTGGTAGCATGACTAGGAGCGATGCCACTGCAGGAGGAACTGTTAGAACGGTCTCGAGGACGGCCCTTATCACCAGAGATACGTCCAGCACATCCGAAAAAGCATCTTCGTTGTATGATTGAAATTAGGAAGTGATACATGGGAACTATGATTCAGCCTTTTACTACGTTCTGAAACACGACGTCTTTTAGGGTCTGAACAACCATAACCAGAAGATGCTTTTTCGGATGTGCTGGACCGTTTTCGATGACCAGCTGATGAAGAAGAAGTGGAACAAACAGAATCCGATACATATCTAGTTTCCTTGTTTCTGAACAGGGAATTGAAGCAACAACGATGATTGCTTTTAGAACGCCAACCATGGCTGTTAGAATCCCCCTCGTCTCAA ]
[-] EMBL CD161657 [ GCGACGATTCTATTCTCTCTTCCGACGTGCTATTTGCTTGTCATCTCTGTCAGGGAGTCTCGGAGAACCAGAAAATTGCCCATTATGTAAACGAACCCGCATTGAATGCCCATCATGGATTTCGATACTTGGACTACGCTGTCGTTCTCGCTTAGTTGGATGGTCAGGCGGAGGT ]
[+] EMBL CD111259 [ ACTGCAGGAGGAACTGTTAGAACGGTCTCGAGGACGGCCCTTATCACCAGAGATTCGTACTGC CTT ACAG GTGCTCGTTGTATGATTGAAATTAGGAAGTGATACATGGGAACTATGATTCAGCCTTTTACTACGTTCTGAAACACGACGTCTTTCAGGGTCTGAACAACCATAACCAGAAGATGCTTTTTCGGATGTGCTGGACCGTTTTCGATGACCAGCTGATGAAGAAGAAGTGGAACAAACAGAATCCGATACACATCTAGTTTCCTTGTTTCTGAACAGGGAATTGAAGCAACAACGATGATTGCTTTTAGAACGCCAATCATGGCTGTTAGAAT CCCCTCGTCTCAAGACCATCATCAAATAGGGCGCACTTC]
[-] EMBL CD095876 [ CGGTCTCGAGGACGGCCCTTATCACCAGAGATACGTACTGC CTT ACAG GTGCTCGTTGTATGATTGAAATTAGGAAGTGATACATGGGAACTATGATTCAGCCTTTTACTACGTTCTGAAACACGACGTCTTTTAGGGTCTGAACAACCATAACCAGAAGATGCTTTTTCGGATGTGCTGGACCGTTTTCGATGACCAGCTGATGAAGAAGAAGTGGAACAAACAGAATCCGATACATATCTAGTTTCCTTGTTTCTGAACAGGGAATTGAAGCAACAACGATGATTGCTTTTAGAACGCCAACCATGGCTGTTAGAAT C ]
consensusID : consensus_9714#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence
[TGGTGAGGCGGGGGTTTGGTAGCATGACTAGGAGCGATGCCACTGCAGGAGGAACTGTTAGGACGGTCTCGAGGACGGCCCTTATCACCAGAGATACGTACTGCCTTACAGGTGCTCGTTGTATGATTGAAATTAGGAAGTGATACATGGGAACTATGATTCAGCCTGAACCAACGGGGATAAAAACAATCACAGACTCAGTGACACGAAAGAAATAAAAACAAGGCTATTCAAAATCAAAAGTTTATATGTGTACCTTTTACTACGTTCTGAAACACGACGTCTTTTAGGGTCTGAACAACCATAACCAGAAGATGCTTTTTCGGATGTGCTGGACCGTTTTCGATGACCAGCTGATGAAGAAGAAGTGGAACAAACA]
[+] EMBL CD163630 [TGGTGAGGCGGGGGTTTGGTAGCATGACTAGGAGCGATGCCACTGCAGGAGGAACTGTTAGGACGGTCTCGAGGACGGCCCTTATCACCAGAGATACGTACTGCCTTACAGGTGCTCGTTGTATGATTGAAATTAGGAAGTGATACATGGGAACTATGATTCAGCCTGAACCAACGGGGATAAAAACAATCACAGACTCAGTGACACGAAAGAAATAAAAACAAGGCTATTCAAAATCAAAAGTTTATATGTGTACCTTTTACTACGTTCTGAAACACGACGTCTTTTAGGGTCTGAACAACCATAACCAGAAGATGCTTTTTCGGATGTGCTGGACCGTTTTCGATGACCAGCTGATGAAGAAGAAGTGGAACAAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9714#0 AAATGTGAAAACACTTGGACCAAGTAGAGGAAATACAATATAGAAGTGTTCATGCCATTC 60
consensus_9714#1 ------------------------------------------------------------
consensus_9714#0 AAAGAAATCTATAGATGATATACAATGGGATCGATCTTTGGCATCTAGTCTTGCAATCGT 120
consensus_9714#1 ------------------------------------------------------------
consensus_9714#0 TTCTAAAACATTAACCTCGTGACGTGCAGCATCACTATAATCACTCTGAGGTTTAAGAGC 180
consensus_9714#1 ------------------------------------------------------------
consensus_9714#0 CTTGACAGCAGTCAACGTATTTGTGTACAAGTCAAAACATTCAAAAACTTGCCCATAGCT 240
consensus_9714#1 ------------------------------------------------------------
consensus_9714#0 ACCCTCTCCTAGTATCTTCTCCACTCGAAAGCGTCGCTTGATAATGTCACCGACCGGTAC 300
consensus_9714#1 ------------------------------------------------------------
consensus_9714#0 AATAGCAGATGGTTTGCGTTTGTGGTGCTCATGACTAGCTTTCCTTCGTGCCTTTTCATC 360
consensus_9714#1 ------------------------------------------------------------
consensus_9714#0 GCGACGCTTCTCTTCTCTCTTCCGACGTGCTATTTGCTTGTCATCTCTGTCAGGGAGTCT 420
consensus_9714#1 ------------------------------------------------------------
consensus_9714#0 CGGAGAACCAGAAAATTGCCCATTATGTAAACGAACCCGCATTGAATGCCCATCATGGAT 480
consensus_9714#1 ------------------------------------------------------------
consensus_9714#0 TTCGATACTTGGACTACGCTGTCGTTCTCGCTTAGTTGGATGGTGAGGCGGAGGTTTGGT 540
consensus_9714#1 ----------------------------------------TGGTGAGGCGGGGGTTTGGT 20
*********** ********
consensus_9714#0 AGCATGACTAGGAGCGATGCCACTGCAGGAGGAACTGTTAGAACGGTCTCGAGGACGGCC 600
consensus_9714#1 AGCATGACTAGGAGCGATGCCACTGCAGGAGGAACTGTTAGGACGGTCTCGAGGACGGCC 80
***************************************** ******************
consensus_9714#0 CTTATCACCAGAGATACGTACTGCCTTACAGGTGCTCGTTGTATGATTGAAATTAGGAAG 660
consensus_9714#1 CTTATCACCAGAGATACGTACTGCCTTACAGGTGCTCGTTGTATGATTGAAATTAGGAAG 140
************************************************************
consensus_9714#0 TGATACATGGGAACTATGATTCAGCCTTTTACTACGTTCTGAAACACGACGTCTTTTAGG 720
consensus_9714#1 TGATACATGGGAACTATGATTCAGCCTGAACCAACGGGGATAAAAACAA------TCACA 194
*************************** * *** *** ** * * *
consensus_9714#0 GTCTGAACAACCATAACCAGAAGATGCTTTTTCGGATGTGCTGGACCGTTTTCGATGACC 780
consensus_9714#1 GACTCAGTGACA-----CGAAAGAAAT--------AAAAACAAGGCTATTCAAAATCAAA 241
* ** * ** * **** * * * * ** ** *
consensus_9714#0 AGCTGATGAAGAAGAAGTGGAACAAACAGAATCCGATACATATCTAGTTTCCTTGTTTCT 840
consensus_9714#1 AGTTTAT-ATGTGTACCTTTTAC---TACGTTCTGAAACACGAC--GTCTTTTAGGGTCT 295
** * ** * * * * ** * ** ** *** * ** * * * ***
consensus_9714#0 GAACAGGGAATTGAAGCAACAACGATGATTGCTTTTAGAACGCCAACCATGGCTGTTAGA 900
consensus_9714#1 GAAC----AACCATAACCA----GAAGATGCTTTTTCGGATGTG---CTGGACCGTT--- 341
**** ** * * * ** *** **** * * * * * * ***
consensus_9714#0 ATCCCCTCGTCTCAAGACCATCATCAAATAGGGCGCACTTC 941
consensus_9714#1 -TTCGATGACCAGCTGATGAAGAAGAAGTGGAACAAACA-- 379
* * * * ** * * ** * * * **
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||