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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9716#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 956 fasta sequence
[ATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCCATCACAACTGAAGTCCACGCTTCTCAGGCAGAACAGACACTTCTCCATACCTAACACCATCTGACGACAGCATGTCCGAATCCAAACCACTGTCCACATCTCGTCTCTCTGTCATGTCGGACAACAACTCGGATACACTCGTCGAACCCACACCCATCACAACACCATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCATCACCGCCTCTATGCACTGGGGTCACGTCAGAATCGAATTCCCGCTCGCCGACGTCAAGGCACGTCACCATTCTATGATCAGTGCCCGTCTGGATGCAATAGTGAGCTATACTCAGATAGATCGTGCTCGATGTTGAACACAGTTGTAGACATGTCACATCCCTGCGACGGATGAATCACCCCGTACCAACGACAGATCCAACCTCAGACAACCTTCCCACACCAACATCTACAACTGGCTCCGAAGCACTCGTCGACTGACACACCACATCTCCTGGTCTCGAGGACGTCGACTTCATCGCCAGAGCAATCAAACCTGCAGGCGCCCACAAACCTGTCAACATCATTCTACCAAGACTCTCGAGACGTCCGGAACTAGGATCGCGAACCAACGACT-GCTCACCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCGTCG]
[+] EMBL CD071946 [ATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCCATCACAACTGAAGTCCACGCTTCTCAGGCAGAACAGACACTTCTCCATACCTAACACCATCTGACGACAGCATGTCCGAATCCAAACCACTGTCCACATCTCGTCTCTCTGTCATGTCGGACAACAACTCGGATACACTCGTCGAACCCACACCCATCACAACACCATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACACCGTAATCAGAAACTGTCTCTGATGACACAACACCCTCAGATTCAT ]
[+] EMBL CD071940 [ATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCCATCACAACTGAAGTCCACGCTTCTCAGGCAGAACAGACACTTCTCCATACCTGACACCATCTGACGACAGCATGTCCGAATCCAAACCACTGTCCACATCTCGTCTCTCTGTCATGTCGGACAACAACTCGGATACACTCGTCGAACCCACACCCATCACAACACCATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGACACAACACCCTC ]
[+] EMBL CD071875 [ CTTCACATCAACATCGTCCATATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCATCACCGCCTCTATGCACTGGGGTCACGTCAGAATCGAATTCCCGCTCGCCGACGTCAAGGCACGTCACCATTCTATGATCAGTGCCCGTCTGGATGCAATAGTGAGCTATACTCAGATAGATCGTGCTCGATGTTGAACACAGTTGTAGACATGTCACATCCCTGCGACGGATGAATCACCCCGTACCAACGACAGATCCAACCTCAGACAACCTTCCCACACCAACATCTACAACTGGCTCCGAAGCACTCGTCGACTGACACACCACATCTCCTGGTCTCGAGGACGTCGACTTCATCGCCAGAGCAATCAAACCTGCAGGCGCCCACAAACCTGTCAACATCATTCTACCAAGACTCTCGAGACGTCCGGAACTAGGATCGCGAACCAACGACT GCTCACCCGA ]
[-] EMBL CD066192 [ ACAGATCCAACCTCAGACAACCTCCCCACACCAACGTCTACAACTGGCTCCGAAGCACTCGTCGACTGACACACCACATCTCCTGGTCTCGAGGACGTCGACTTCATCGCCAGAGCAATCAAACCTGCAGGCGCCAACAAACCTGTCAACATCATTCTACCAAGACTCTCGAGACGTCCGGAACTAGGATCGCGAACCAACGACTCGTCCATCCGACTTGATGATGACAGATGTGAGAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGAGGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCTGGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGTTTTGTCGTCG]
consensusID : consensus_9716#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 598 fasta sequence
[AGATACACCGTAATCAGAAATTGTCTCTCTGTCATGTCGGACAACAACTCGGATACACCCGTCGAACCCACACCCATCACAACACCATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCATCACCGCCTCTATGCACTGGGGTCACGTCACAATCGAATTCCCGCTCGCCGACGTTGAAGGCCCGTCGTCGACATTCTATGATTCAGTGCCCATCTGGATGCGAATAGTGAGCTCAGTTCTACTATATCCGTGCTCGATTGTTTAACACACTTGTGCCTGGTCCACATCCCTGCACGATGAATCACCCGTACCAACGACAGATCCAACCTCAGACAACCTTCCCACACCAACATCTACAACTGGCTCCGAAGCACTCGTCGACTGACACACCACATCTCCTGGTCTCGAGGACGTCGACTTCATCGCCAGAGCAATCAAACCTGCAGGCGCCAACAAACCTGTCAACATCATTCTACCAAGACTCTCGAGACGTCCGGAACT]
[+] EMBL CD071975 [AGATACACCGTAATCAGAAATTGTCTCTCTGTCATGTCGGACAACAACTCGGATACACCCGTCGAACCCACACCCATCACAACACCATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCAT ]
[+] EMBL CD071880 [ CTTCACATCAACATCGTCCATGTCCACACCAGATATACCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCATCACCGCCTCTATGCACTGGGGTCACGTCACAATCGAATTCCCGCTCGCCGACGTTGAAGGCCCGTCGTCGACATTCTATGATTCAGTGCCCATCTGGATGCGAATAGTGAGCTCAGTTCTACTATATCCGTGCTCGATTGTTTAACACACTTGTGCCTGGTCCACATCCCTGCACGATGAATCACCCGTACCAACGACAGATCCAACCTCAGACAACCTTCCCACACCAACATCTACAACTGGCTCCGAAGCACTCGTCGACTGACACACCACATCTCCTGGTCTCGAGGACGTCGACTTCATCGCCAGAGCAATCAAACCTGCAGGCGCCAACAAACCTGTCAACATCATTCTACCAAGACTCTCGAGACGTCCGGAACT]
consensusID : consensus_9716#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 446 fasta sequence
[ATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGACACAACACCATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCATCACCGCCTCTATGCACTGGGGTCACGTCACGATCGAAACTCATCTCACCACGTTCAATCACTCTCACATCTGTCATGTCGGACAACAACTCGGATACACTCGTCGAACCCACACCCATCACAACACCATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCATCACCGC]
[-] EMBL CD084814 [ATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGACACAACACCATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCATCACCGCCTCTATGCACTGGGGTCACGTCACGATCGAAACTCATCTCACCACGTTCAATCACTCTCACATCTGTCATGTCGGACAACAACTCGGATACACTCGTCGAACCCACACCCATCACAACACCATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCATCACCGC]
[-] EMBL CD084898 [ TCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCATCACCGCCTCTATGCACTGGGGTCACGTCACGATCGAAACTCATCTCACCACGTTCAATCACTCTCACATCTGTCATGTCGGACAACAACTCGGATACACTCGTCGAA CCACACCCATCACAACGCCATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCATCACCGC]
consensusID : consensus_9716#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 398 fasta sequence
[CGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTGTCTGTGTCCGATAGTAGTTGTGCCAGTGTGTCAGCGAGGACTTGGACGGCCGACTCGGACTGTCCGTGTCAGCTTCAAATATGCCGTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTGGGTGTGTTCGATAG]
[+] EMBL CD166552 [CGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTGTCTGTGTCCGATAGTAGTTGTGCCAGTGTGTCAGCGAGGACTTGGACGGCCGACTCGGACTGTCCGTGTCAGCTTCAAATATGCCGTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTGGGTGTGTTCGATAG]
consensusID : consensus_9716#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 131 fasta sequence
[GGTCACGTCACGATCGAAACTCATCTCACCACGTTCAATCACTCTCACATCTGTCATCATCAAGTCGGATACACTCGTCGAACCCATACCCATCACAAACACCATCTCTGCTCGACGACAAAACACACCTG]
[+] EMBL CD142786 [GGTCACGTCACGATCGAAACTCATCTCACCACGTTCAATCACTCTCACATCTGTCATCATCAAGTCGGATACACTCGTCGAACCCATACCCATCACAAACACCATCTCTGCTCGACGACAAAACACACCTG]
consensusID : consensus_9716#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 107 fasta sequence
[TCAACAAAATGGGACTGCACAGGAACCNGGGGGGNTCTGAAGATCGGCTACAAAGAAATTGTCAAAGAAGTATCCGGCTATATCAAAAAAGTTGGTTACAATCCCGC]
[+] EMBL SMRAP140 [TCAACAAAATGGGACTGCACAGGAACCNGGGGGGNTCTGAAGATCGGCTACAAAGAAATTGTCAAAGAAGTATCCGGCTATATCAAAAAAGTTGGTTACAATCCCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9716#0 ATCTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCCATCACAACTGAA 60
consensus_9716#1 ------------------------------------------------------------
consensus_9716#2 ------------------------------------------------------------
consensus_9716#4 ------------------------------------------------------------
consensus_9716#5 ------------------------------------------------------------
consensus_9716#3 ------------------------------------------------------------
consensus_9716#0 GTCCACGCTTCTCAGGCAGAACAGACACTTCTCCATACCTAACACCATCTGACGACAGCA 120
consensus_9716#1 ------------------------------------------------------------
consensus_9716#2 ------------------------------------------------------------
consensus_9716#4 ------------------------------------------------------------
consensus_9716#5 ------------------------------------------------------------
consensus_9716#3 ------------------------------------------------------------
consensus_9716#0 TGTCCGAATCCAAACCACTGTCCACATCTCGTCTCTCTGTCATGTCGGACAACAACTCGG 180
consensus_9716#1 -------AGATACACCGTAATC-AGAAATTGTCTCTCTGTCATGTCGGACAACAACTCGG 52
consensus_9716#2 --------------------------------------------ATCCACACCAGATACA 16
consensus_9716#4 ------------------------------------------------------------
consensus_9716#5 ------------------------------------------------------------
consensus_9716#3 ------------------------------------------------------------
consensus_9716#0 ATACACTCGTCGAAC-CCACACCCATCACAACACCATCTCTGCTCGACGACAAAACACCC 239
consensus_9716#1 ATACACCCGTCGAAC-CCACACCCATCACAACACCATCTCTGCTCGACGACAAAACACCC 111
consensus_9716#2 CCGTAATCAGAAATTGTCTCTGATGACACAACACCATCTCTGCTCGACGACAAAACACCC 76
consensus_9716#4 ------------------------------------------------------------
consensus_9716#5 ------------------------------------------------------------
consensus_9716#3 -------CGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTG 53
consensus_9716#0 TCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACA 299
consensus_9716#1 TCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACA 171
consensus_9716#2 TCACTCGTTTGCATCACTCGCCTCTTCACATCAACATCGTCCATATCCACACCAGATACA 136
consensus_9716#4 ------------------------------------------------------------
consensus_9716#5 ------------------------------------------------------------
consensus_9716#3 CAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCG 113
consensus_9716#0 CCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCATCACCGCCTCTATGC 359
consensus_9716#1 CCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCATCACCGCCTCTATGC 231
consensus_9716#2 CCGTAATCAGAAATTGTCTCTGATGACACAACACCCTCAGATTCATCACCGCCTCTATGC 196
consensus_9716#4 ------------------------------------------------------------
consensus_9716#5 -----------------------------------------------------TCAACAA 7
consensus_9716#3 ATTCAACCTGTTCTACCACTTCACTGTCTGTGTCCGATAGTAGTTGTGCCAGTGTGTCAG 173
consensus_9716#0 ACTGGGGTCACGTCAGAATCGAATTCCCGCTCGCCGACGTC-AAGGCACGTCACC---AT 415
consensus_9716#1 ACTGGGGTCACGTCACAATCGAATTCCCGCTCGCCGACGTTGAAGGCCCGTCGTCGACAT 291
consensus_9716#2 ACTGGGGTCACGTCACGATCGAAACTCATCTCACC-ACGTTCAATCACTCTCACA----- 250
consensus_9716#4 -----GGTCACGTCACGATCGAAACTCATCTCACC-ACGTTCAATCACTCTCACA----- 49
consensus_9716#5 AATGGGACTGCACAGGAACCNGGGGGGNTCTG----------AAGATCGGCTACAAAGAA 57
consensus_9716#3 CGAGGACTTGGACGGCCGACTCGGACTGTCCGTGTCAGCTTCAAATATGCCGTCACCAAC 233
* * **
consensus_9716#0 TCTATGAT---CAGTGCCCGTCTGGATGC-AATAGTGAGCTA--TACTCAGATAGATC-G 468
consensus_9716#1 TCTATGATT--CAGTGCCCATCTGGATGCGAATAGTGAGCTC--AGTTCTACTATATCCG 347
consensus_9716#2 TCTGTCATGTCGGACAACAACTCGGATACACTCGTCGAACCC--ACACCCATCACAA--- 305
consensus_9716#4 TCTGTCAT------CATCAAGTCGGATACACTCGTCGAACCC--ATACCCATCACAAA-- 99
consensus_9716#5 ATTGTCAAAG-AAGTATCCGGCTATATCAAAAAAGTTGGTTA--CAATCCCGC------- 107
consensus_9716#3 TTCACCATATTCCGCCTCCATCT-CACCGACACGCTCAACCAATCGTTCCCGTTCCGGTT 292
* * * *
consensus_9716#0 TGCTCGAT-GTTGAACACAGTTGTAGACATGTCACATCCCTGCGACGGATGAATCACCCC 527
consensus_9716#1 TGCTCGATTGTTTAACACACTTGTGCCTGGTCCACATCCCTGCAC--GATGAATCACCC- 404
consensus_9716#2 --CACCAT--CTCTGCTCGACGACAAAACACCCTCACTCGTTTGCATCACTCGCCTCTTC 361
consensus_9716#4 --CACCAT--CTCTGCTCGACGACAAAACACACCTG------------------------ 131
consensus_9716#5 ------------------------------------------------------------
consensus_9716#3 GTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACAC 352
consensus_9716#0 GTACCAACGACAGATCCAACCTCAGACAACCTTCCCACACCAACATCTACAACTGGCTCC 587
consensus_9716#1 GTACCAACGACAGATCCAACCTCAGACAACCTTCCCACACCAACATCTACAACTGGCTCC 464
consensus_9716#2 ACATCAACATCGTCCATATCCACACCAGATACACCGTAATCAGAAATTGTCTCTGATGAC 421
consensus_9716#4 ------------------------------------------------------------
consensus_9716#5 ------------------------------------------------------------
consensus_9716#3 GTTCCGATTCAACCTGTTCTACCACTTCACTGGGTGTGTTCGATAG-------------- 398
consensus_9716#0 GAAGCACTCGTCGACTGACACACCACATCTCCTGGTCTCGAGGACGTCGACTTCATCGCC 647
consensus_9716#1 GAAGCACTCGTCGACTGACACACCACATCTCCTGGTCTCGAGGACGTCGACTTCATCGCC 524
consensus_9716#2 ACAACACCCTCAGATTCAT-CACCGC---------------------------------- 446
consensus_9716#4 ------------------------------------------------------------
consensus_9716#5 ------------------------------------------------------------
consensus_9716#3 ------------------------------------------------------------
consensus_9716#0 AGAGCAATCAAACCTGCAGGCGCCCACAAACCTGTCAACATCATTCTACCAAGACTCTCG 707
consensus_9716#1 AGAGCAATCAAACCTGCAGGCGCCAACAAACCTGTCAACATCATTCTACCAAGACTCTCG 584
consensus_9716#2 ------------------------------------------------------------
consensus_9716#4 ------------------------------------------------------------
consensus_9716#5 ------------------------------------------------------------
consensus_9716#3 ------------------------------------------------------------
consensus_9716#0 AGACGTCCGGAACTAGGATCGCGAACCAACGACTGCTCACCCGACTTGATGATGACAGAT 767
consensus_9716#1 AGACGTCCGGAACT---------------------------------------------- 598
consensus_9716#2 ------------------------------------------------------------
consensus_9716#4 ------------------------------------------------------------
consensus_9716#5 ------------------------------------------------------------
consensus_9716#3 ------------------------------------------------------------
consensus_9716#0 GTGAGAGTGATTGAACGTGGTGAGATGAGTTTCGATCGTGACGTGACCCCAGTGCATAGA 827
consensus_9716#1 ------------------------------------------------------------
consensus_9716#2 ------------------------------------------------------------
consensus_9716#4 ------------------------------------------------------------
consensus_9716#5 ------------------------------------------------------------
consensus_9716#3 ------------------------------------------------------------
consensus_9716#0 GGCGGTGATGAATCTGAGGGTGTTGTGTCATCAGAGACAATTTCTGATTACGGTGTATCT 887
consensus_9716#1 ------------------------------------------------------------
consensus_9716#2 ------------------------------------------------------------
consensus_9716#4 ------------------------------------------------------------
consensus_9716#5 ------------------------------------------------------------
consensus_9716#3 ------------------------------------------------------------
consensus_9716#0 GGTGTGGATATGGACGATGTTGATGTGAAGAGGCGAGTGATGCAAACGAGTGAGGGTGTT 947
consensus_9716#1 ------------------------------------------------------------
consensus_9716#2 ------------------------------------------------------------
consensus_9716#4 ------------------------------------------------------------
consensus_9716#5 ------------------------------------------------------------
consensus_9716#3 ------------------------------------------------------------
consensus_9716#0 TTGTCGTCG 956
consensus_9716#1 ---------
consensus_9716#2 ---------
consensus_9716#4 ---------
consensus_9716#5 ---------
consensus_9716#3 ---------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||