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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9718#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 931 fasta sequence
[GCTTAAAGTATCAATTAGAGAGGCCCTTCGTGATAAAGAAGCGATGAGTTCAAAACAGGTCAAAGTTTGTGCATTGCACCTGAGTAGTCGTATTTCGGATCTCATGCCTTCAGGTTCGATATATCAAGCTGCTTTAACTTGTTATGCTCGTACGCACAATACTACAGAAAGCGATGTCATGGATAAAATTAGGAGAGATCGCAGATTTTCTATACCACCTGAGTCAGCTCGATTACAGTACGAAGCAACTACTGGATTATATTATGACCCAGAAACTGCTTTATACTATGACCCACTAAGAGGTTATTTCTATGATTCAACGAATCAAATGTATTATTATTGGTCTCAATCTGAAGGACGATATATCTTGGCCAATGCATTAATCCAAGCTGAACTTGCTGCTGCGCATGTAGCTCAAGCAGTAGCAGCCCAAGCTGCCGCAGACAAAGCTATGGCTGAGCGAGAAGCCGCTAAAAAGGCGGCCATGTGTGTAGCCGCGCAATTGGCGGAGATACGTGCTGGTAAAGACGACTATGCTGCTTATGCGTACGCAACATGTGTATTACCTCAACAAGAACCAAGTGATCCAGATTACAAAGAAATTTCTATGGACAGTGGTAGATTNTGTACCGCTTATCAAAATACAACAGCTGCTGCANATAATATAGAATCATCACTANNAGCATGGAATACANNNGC-ATACT-ACAGTGGTACTGAGATTTTGTCGTCTAAACTCTTTGTCTTATACAGATGACATACAGAACTGATCATTGTATTCACACACCACGCCAGGGTGTAATATATACTGTAGAATACGACAACTCCATTCATTGCTCATCCATTCTCATACTACGATTGCACTTGCGATTAAGCTGATATTGGCGGGATTAATNGGGTGNCGGATCCTGGTAATACTTGAAGTACTTCGAAG]
[+] EMBL CD079871 [GCTTAAAGTATCAATTAGAGAGGCCCTTCGTGATAAAGAAGCGATGAGTTCAAAACAGGTCAAAGTTTGTGCATTGCACCTGAGTAGTCGTATTTCGGATCTCATGCCTTCAGGTTCGATATATCAAGCTGCTTTAACTTGTTATGCTCGTACGCACAATACTACAGAAAGCGATGTCATGGATAAAATTAGGAGAGATCGCAGATTTTCTATACCACCTGAGTCAGCTCGATTACAGTACGAAGCAACTACTGGATTATATTATGACCCAGAAACTGCTTTATACTATGACCCACTAAGAGGTTATTTCTATGATTCAACGAATCAAATGTATTATTATTGGTCTCAATCTGAAGGACGATATATCTTGGCCAATGCATTAATCCAAGCTGAACTTGCTGCTGCGCATGTAGCTCAAGCAGTAGCAGCCCAAGCTGCCGCAGACAAAGCTATGGCTGAGCGAGAAGCCGCTAAAAAGGCGGCCATGTGTGTAGCCGCGCAATTGGCGGAGATACGTGCTGGTAAAGACGACTATGCTGCTTATGCGTACGCAACATGTGTATTACCTCAACAAGAACCAAGTGATCCAGATTACAAAGAAATTTCTATGGACAGTGGTAGATTNTGTACCGCTTATCAAAATACAACAGCTGCTGCANATAATATAGAATCATCACTANNAGCATGGAATACANNNGC ATACT ACAGTGGTACTGAGATTTTGTCGTCTAAACTCTTTGTCTTATACAGATGACATACAGAACTGATCATTGTATTCACACACCACGCCAGGGTGTAATATATACTGTAGAATACGACAACTCCATTCATTGCTCATCCATTCTCATACTACGATTGCACTTGCGATTAAGCTGATATTGGCGGGATTAATNGGGTGNCGGATCCTGGTAATACTTGAAGTACTTCGAAG]
[+] EMBL CD084343 [ gGTGATAAAGAAGCGATGAGTTCAAAACAGGTCAAAGTTTGTGCATTGCACCTGAGTAGTCGTATTTCGGATCTCATGCCTTCAGGTTCGATATATCAAGCTGCTTTAACTTGTTATGCTCGTACGCACAATACTACAGAAAGCGATGTCATGGATAAAATTAGGAGAGATCGCAGATTTTCTATACCACCTGAGTCAGCTCGATTACAGTACGAAGCAACTACTGGATTATATTATGACCCAGAAACTGCTTTATACTATGACCCACTAAGAGGTTATTTCTATGATTCAACGAATCAAATGTATTATTATTGGTCTCAATCTGAAGGACGATATATCTTGGCCAATGCATTAATCCAAGCTGAACTTGCTGCTGCGCATGTAGCTCAAGCAGTAGCAGCCCAAGCTGCCGCAGACAAAGCTATGGCTGAGCGAGAAGCCGCTAAAAAGGCGGCCATGTGTGTAGCCGCCCAATTGGC ]
[+] EMBL CD094994 [ TTCGGATCTCATGCCTTCAGGTTCGATATATCAAGCTGCTTTAACTTGTTATGCTCGTACGCACAATACTACAGAAAGCGATGTCATGGATAAAATTAGGAGAGATCGCAGATTTTCTATACCACCTGAGTCAGCTCGATTACAGTACGAAGCAACTACTGGATTATATTATGACCCAGGAACTGCTTTATACTATGACCCACTAAGAGGTTATTTCTATGATTCAACGAATCAAATGTATTATTATTGGTCTCAATCTGAAGGACGATATATCTTGGCCAATGCATTAATCCAAGCTGAACTTGCTGCTGCGCATGTAGCTCAAGCAGTAGCAG ]
[+] EMBL CD095016 [ TTCGGATCTCATGCCTTCAGGTTCGATATATCAAGCTGCTTTAACTTGTTATGCTCGTACGCACAATACTACAGGAAGCGATGTCATGGATAAAATTAGGAGAGATCGCAAATTTTCTATACCACCTGAGTCAGCTCGATTACAGTACGAAGCAACTACTGGATTATATTATGACCCAGAAACTGCTTTATACTATGACCCACTAAGAGGTTATTTCTATGATTCAACGAATCAAATGTATTATTATTGGTCTCAATCTGAAGGACGATATATCTTGGCCAATGCATTAATCCAAGCTGAACTTGCTGCTGCGCATGTAGCTCAAGCAGTAGCAG ]
[-] EMBL CD094870 [ TCGGATCTCATGCCTTCAGGTTCGATATATCAAGCTGCTTTAACTTGTTATGCTCGTACGCACAATACTACAGAAAGCGATGTCATGGATAAAATTAGGAGAGATCGCAGATTTTCCATACCACCTGAGTCAGCTCGATTACAGTACGAAGCAACTACTGGATTATATTATGACCCAGAAACTGCTTTATACTATGACCCACTAAGAGGTTATTTCTACGATCCAACGAATCAAATGTATTATTATTGGTCTCAATCTGAAGGACGATATATCTTGGCCAATGCATTAATCCAAGCTGAACTTGCTGCTGCGCATGTAGCTCAAGCAGTAGCAGC ]
[-] EMBL CD094858 [ TCGGATCTCATGCCTTCAGGTTCGATATATCAAGCTGCTTTAACTTGTTATGCTCGTACGCACAATACTACAGAAAGCGATGTCATGGATAAAATTAGGAGAGATCGCAGATTTTCCATACCACCTGAGTCAACTCGATTACAGTACGAAGCAACTACTGGATTATATTATGACCCAGAAACTGCTTTATACTATGACCCACTAAGAGGTTATTTCTATGATTCAACGAATCAAATGTATTATTATTGGTCTCAATCTGAAGGACGATATATCTTGGCCAATGCATTAATCCAAGCTGAACTTGCTGCTGCGCATGTAGCTCAAGCAGTAGCAGC ]
[-] EMBL CD094893 [ TTCAGGTTCGATATATCAAGCTGCTTTAACTTGTTATGCTCGTACGCACAATACTACAGAAAGCGATGTCATGGATAAAATTAGGAGAGATCGCAGATTTTCTATACCACCTGAGTCAGCTCGATTACAGTACGAAGCAACTACTGGATTATATTATGACCCAGAAACTGCTTTATACTATGACCCACTAAGAGGTTATTTCTATGATTCAACGAATCAAATGTATTATTATTGGTCTCAATCTGAAGGACGATATATCTTTGCCAATGCATTAATCCAAGCTGAACTTGCTGCTGCGCATGTAGCTCAAGCAGTAGCAGC ]
[-] EMBL CD094842 [ TTCAGGTTCGATATATCAAGCTGCTTTAACTTGTTATGCTCGTACGCACAATACTACAGAAAGCGATGTCATGGATAAAATTGGGAGAGATCGCAGATTTTCTTTACCACCTGAGTCAGCTCGATTACAGTACGAAGCAACTACTGGATTATATTATGACCCAGAAACTGCCTTATACTATGACCCACTAAGAGGTTATTTCTATGATTCAACGAATCAAATGTATTATTATTGGTCTCAATCTGAAGGACGATATATCTTGGCCAATGCATTAATCCAAGCTGAACTTGCTGCTGCGCATGTAGCTCAAGCAGTAGCAGC ]
[-] EMBL CD091948 [ TACAGTACGAAGCAACTACTGGATTATATTATGACCCAGAAACTGCTTTATACTATGACCCACTAAGAGGTTATTTCTATGATTCAACGAATCAAATGTATTATTATTGGTCTCAATCTGAAGGACGATATATCTTGGCCAATGCATTAATCCAAGCTGAACTTGCTGCTGCGCATGTAGCTCAAGCAGTAGCAGCCCAAGCTGCCGCAGACAAAGCTATGGCTGAGCGAGAAGCCGCTAAAAAGGCGGCCATGTGTGTAGCCGCGCAATTGGCGGAGATACGTGCTGGTAAAGACGACTATGCTGCTTATGCGTACGCAACATGTGTATTACCTCAACAAGAACCAAGTGATCCAGATTACAAAGAAATTTCTATGGACAGTGGTAGATTTTGTACCGCTTATCAAAATACAACAGCTGCTGCAAATAATATAGAATCATCACTAAAAGCATGGAATACA AGCAATACTAACAGTGGTACTGAGATTTTGT ]
consensusID : consensus_9718#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 460 fasta sequence
[CGAGGCTAAAAGCATGGAATACAAGCAATACTAACAGTGGTACTGAGATTTTGTCGTCTAAACCTCTTGTTTCCTTATACAGATGACAATACAGAAACTGATCATTGTAGTTCAACACCACCACCGCCAGGGTTGTAAATAATAATACTGTAGAAATCACGACAAACTCCCATTCCATTGCTTCAGTCACATTTCTCCACTCACTACGTATTTGGCACTTTTGCGTATTATAAGCTGTATATTTGTGCGGTGTATTTAATTTGGTGTTTGTACAGCGATTTCCTGGGTTTAAATAACTTTTGTAATAGTTTACTATTTCTGTAAAGTATAGACTATTCTAGTACAAAAAAGGATGAAGTTGGTGAAACGACATTTGCATGTCATGGTAACTAAAGCGTCCTATGAATAACGGTAGACGATGCTGAATGATTTAATTAGAGTACAACCTATCGAATACCGC]
[+] EMBL CD083926 [CGAGGCTAAAAGCATGGAATACAAGCAATACTAACAGTGGTACTGAGATTTTGTCGTCTAAACCTCTTGTTTCCTTATACAGATGACAATACAGAAACTGATCATTGTAGTTCAACACCACCACCGCCAGGGTTGTAAATAATAATACTGTAGAAATCACGACAAACTCCCATTCCATTGCTTCAGTCACATTTCTCCACTCACTACGTATTTGGCACTTTTGCGTATTATAAGCTGTATATTTGTGCGGTGTATTTAATTTGGTGTTTGTACAGCGATTTCCTGGGTTTAAATAACTTTTGTAATAGTTTACTATTTCTGTAAAGTATAGACTATTCTAGTACAAAAAAGGATGAAGTTGGTGAAACGACATTTGCATGTCATGGTAACTAAAGCGTCCTATGAATAACGGTAGACGATGCTGAATGATTTAATTAGAGTACAACCTATCGAATACCGC]
[-] EMBL CD193861 [ TTTGTCGTCTAAACCTCTTG TTCCTTATACAGATGACAATACAGAAACTGATCATTGTAGTTCAACACCACCACCGCCAGGGTTGTAAATAATAATACTGTAGAAATCACGACAAACTCCCATTCCATTGCTTCAGTCACATTTCTCCACTCACTACGTATTTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9718#0 GCTTAAAGTATCAATTAGAGAGGCCCTTCGTGATAAAGAAGCGATGAGTTCAAAACAGGT 60
consensus_9718#1 ------------------------------------CGAGGCTAAAAGCATGGAATACAA 24
** ** * ** ** *
consensus_9718#0 CAAAGTTTGTGCATTGCACCTGAGTAGTCGTATTTCGGATCTCATGCCTTCAGGTTCGAT 120
consensus_9718#1 GCAATACTA-ACAGTGGTACTGAGATTTTGTCGTCTAAACCTCTTGTTTCC---TTATAC 80
** * ** ** ***** * ** * * *** ** * * ** *
consensus_9718#0 ATATCAAGCTGCTTTAACTTGTTATGCTCGTACGCACAATACTACAGAAAGCGATGTCAT 180
consensus_9718#1 AGATGACAATACAGAAACTGATCATTGTAGTTCA-ACACCACCACCGCCAGGGTTGTAAA 139
* ** * * * **** * ** * ** * *** ** ** * ** * *** *
consensus_9718#0 GGATAAAATTAGGAGAGATCGCAG--ATTTTCTATACCACCTGAGTCAGCTCGATTACAG 238
consensus_9718#1 TAATAATACT-GTAGAAATCACGACAAACTCCCATTCCAT-TGCTTCAGTCACATTTCTC 197
**** * * * *** *** * * * * ** *** ** **** *** *
consensus_9718#0 TACGAAGCAACTACTGGATTATATTATGACCCAGAAACTGC---TTTATACTATG-ACCC 294
consensus_9718#1 CACTCACTACGTATTTGGCACTTTTGCGTATTATAAGCTGTATATTTGTGCGGTGTATTT 257
** * * ** * * * ** * * ** *** *** * * ** *
consensus_9718#0 ACTAAGAGGTTATTTCTATGATTCAACGAATCAAATGTATTATTAT--TGGTCTCAATCT 352
consensus_9718#1 AATTTGGTGTTTGTACAGCGATTTCCTGGGTTTAAATAACTTTTGTAATAGTTTACTATT 317
* * * *** * * **** * * ** * * ** * * ** * *
consensus_9718#0 GAAGGACGATATATCTTGGCC-AATGCATTAATCCAAGCTGAACTTGCTGCTGCG-CATG 410
consensus_9718#1 TCTGTAAAGTATAGACTATTCTAGTACAAAAA---AGGATGAAGTTGGTGAAACGACATT 374
* * **** * * * * ** ** * * **** *** ** ** ***
consensus_9718#0 TAGCTCAAGCAGTAGCAGCCCAAGCTGCCGCAGACAAAGCTATGGCTGAGCGAGAAGCCG 470
consensus_9718#1 TG---CATGTCATGGTAACTAAAGC-GTCCTATGAATAACGGTAGACGATGCTGAATGAT 430
* ** * * * * * **** * * * * * * * * ** ***
consensus_9718#0 CTAAAAAGGCGGCCATGTGTGTAGCCGCGCAATTGGCGGAGATACGTGCTGGTAAAGACG 530
consensus_9718#1 TTAATTAGAGTACAACCTATCGAATACCGC------------------------------ 460
*** ** * * * * * ***
consensus_9718#0 ACTATGCTGCTTATGCGTACGCAACATGTGTATTACCTCAACAAGAACCAAGTGATCCAG 590
consensus_9718#1 ------------------------------------------------------------
consensus_9718#0 ATTACAAAGAAATTTCTATGGACAGTGGTAGATTNTGTACCGCTTATCAAAATACAACAG 650
consensus_9718#1 ------------------------------------------------------------
consensus_9718#0 CTGCTGCANATAATATAGAATCATCACTANNAGCATGGAATACANNNGCATACTACAGTG 710
consensus_9718#1 ------------------------------------------------------------
consensus_9718#0 GTACTGAGATTTTGTCGTCTAAACTCTTTGTCTTATACAGATGACATACAGAACTGATCA 770
consensus_9718#1 ------------------------------------------------------------
consensus_9718#0 TTGTATTCACACACCACGCCAGGGTGTAATATATACTGTAGAATACGACAACTCCATTCA 830
consensus_9718#1 ------------------------------------------------------------
consensus_9718#0 TTGCTCATCCATTCTCATACTACGATTGCACTTGCGATTAAGCTGATATTGGCGGGATTA 890
consensus_9718#1 ------------------------------------------------------------
consensus_9718#0 ATNGGGTGNCGGATCCTGGTAATACTTGAAGTACTTCGAAG 931
consensus_9718#1 -----------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||